| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2262 |
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| Symbol | |
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| ID | 3960817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2475177 |
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| End bp | 2477738 |
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| Gene Length | 2562 bp |
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| Protein Length | 853 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637917083 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_523515 |
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| Protein GI | 89901044 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCCAA GCACCCGCAC CTGCATTCTC ATTGTTGACG ATGTCAACGA GAACCTGCAC
GCACTAATGA ACATCCTGCG CGATGACTAT GCCATCCTGG CGGCCAACAC GGGTGAGAAA
GCCCTTGAAC TGGCGCGGCG CGTGCCCCAG CCCGATCTGA TTTTGCTGGA CATCAAAATG
CCCGGCATGG ACGGGTATTC CGTTCTGGCA CACCTGAAAG CCGATCCGAA AACCGCCGAC
ATTCCGGTGA TCTTTGTTAC CGCTTTGGCC GATGCTGCCG ACGAGGCGCG TGGCCTGACC
CTGGGCGTGG CCGACTACAT CACCAAACCG GTCAACCCGG ACTTGCTGCA TTTGCGGGTG
CGCATCCAGC TTGAATTGCA GCGCCATCGC AGACAACCGG TCACTTTTGA CATAGCCCAC
CAGCAAGAGC GCCAGGCGTC GCTCCTGGTG GTGGACGATG TGCCGGAAAA CATCCACGAA
TTGCTGGATG CCCTCAAGGA GGAATACCGC ATCATGGTGG CCAACTCAGG GCCCAAGGCC
CTTGAATTGG TGCAGGGTCC GACACCACCC GACCTGGTGC TGCTGGACAT TGTGATGCCC
GGCATGGATG GCTACGAAGT GTGCCAACGC ATCAAAGCCA GCGCCGCAGG CAATGGCATT
CCGGTGATCT TTGTTACCGT GGTGGATGCA ACTGATCAAA AGGTCAAAGG GTTTGACCTG
GGCGCGGCCG ACTTTATTAG CAAGCCATTC GACATTGATG AAGTACGCGC CCGTGTGCGC
ACCCATCTAG AACTGGCCCG GCTGCGCTTC TCGCTGGAGC AACTGGTGGC ACAGCGCACC
GCCCTGCTAA ACAAAAGCGA AGAAAAGTAC CGCATCCTGG CCGACTACTC ACCCAACTGG
GAATACTGGA TGGCACCCGA TGGCAGCTAC CTGTATGTGT CGCCCGCTTG TGTGCACGAG
TCCGGTTACG CTCCGCAAGA CTTTTTCGAC AATGCTGAAT TGATGGACAC CATCATCCAT
CCGGATGACC TGTCTGCCTG GAATAAATAC GGTCCGGCCG CTGCGGGTAC CGTGTCAGAA
CCGCTGATTT TTCGCATCAA GGCAAAAGAC GGCGGCGAAC GCTGGATCGA ACACGTCTCC
AACAGGGTGC TGGACACATC GGGGCGTTCA CTTGGCCAAC GCGGCTCGCA TCGCGACATT
TCCAAACGCC ACGAGACCGA GCAACGACTG GATTTCTACA TCAACCGCGA TCCGCTCACA
GGCTTGCCGA ACCGGGTTCT GTTTCGTGAG TTTTTGGGCC GCACTTTGCA GCGTGCTGAG
CGTGACCAGT CACAGTTCGC GCTGTTGATT GTCAATTTGG ACAACTTCAA TAGCGTTAAC
CAGAGCCTCG GTCACAGCCA GGGTGACCAA CTGCTGATTG AGGCCAGCAA ACGCCTGCGC
ACGCTGCTGC CAGACCTGGA TGCCGTTGCC CGCATCAGCG GGGATGAGTT CAACATCATC
TTGAACCAGG GCGAAAATGC GCCGCCGATT GATCTGGTTG CGCAGCGCAT GATTGATGCC
TTGGGAATCC CGTTCAATCT CAATGACAGC AGCGTCTATG TGGGTGCAAG CATCGGCATT
TCCATGTACC CGTCCGATGG ACGCGACGTC GAGACGCTGC AAAGCAATGC GGCGGCGGCG
CTGCACCAGG CCAAGTCGCG CGGTCGAGGC ATGTTGCGGT TCTTCTCCAT GGAGATGATG
GGCCGCTCCA AAGCGCGGCT GACGCTAGAA GCCGCACTAC GCCAATCGGT CGAACGTGAC
GAACTTCGGC TTTACTACCA GCCGCAAGTG GACCTGATCA GCGGCGAAAT AGTGGGCGTG
GAAGCGTTGG TGCGCTGGCA GCATGCCGAG CGCGGCCTGA TTCCACCCAA CGAATTCATA
CCTTTGGCAG AAGAAAGTGG CTACGTGGTC ACGCTGGGCG ACTGGGTTTT GCGCACTGCC
TGTCGGCAGA TCAAGCAATG GGCAGGGTTG GGCTTGCCAC TGCGCCAGGT GGCGGTGAAC
GTGTCTGCCG TTCAGTTAAG CCGCGGCAAA CTGGTTGAGT CGGTGAAGGA TGCCCTGCAA
GAAACCGGCA TTGCACCGGG CATGCTGGAG CTCGAAATCA CGGAGAGCAG CGTCATGCTG
GACCGTGAAA GGTCATTGGA GACACTGGCC AGTCTGAAAG CCCTGGGCGT ACAACTATCG
ATTGACGACT TCGGCACAGG TTATTCGTCT CTGGCATACC TCCAGCAGTT GGAAGTCGAC
AAGCTCAAAA TTGACATTGC CTTTGTGCGC GACATGACCA CCAACAGCAA CAATGCCGCC
ATCGTCAAGG CGGTCATCGC TTTGGGGCAC AGCCTGGGTC TGGAGATCAT TGGCGAAGGC
GTAGAGACTG CTGACCAGGC ACGCCATTTG CGCACTCTGC GCTGCGACAT CATGCAGGGG
TATATGGTCA GCAGGCCGAT ACCGGGCGCG GAGATGACAC AGTTCATGCG CACCTTCAAA
CCCGTCGTCA TCCCGGCGGG TGACCAACGT GCGGCTGGTT GA
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| Protein sequence | MNPSTRTCIL IVDDVNENLH ALMNILRDDY AILAANTGEK ALELARRVPQ PDLILLDIKM
PGMDGYSVLA HLKADPKTAD IPVIFVTALA DAADEARGLT LGVADYITKP VNPDLLHLRV
RIQLELQRHR RQPVTFDIAH QQERQASLLV VDDVPENIHE LLDALKEEYR IMVANSGPKA
LELVQGPTPP DLVLLDIVMP GMDGYEVCQR IKASAAGNGI PVIFVTVVDA TDQKVKGFDL
GAADFISKPF DIDEVRARVR THLELARLRF SLEQLVAQRT ALLNKSEEKY RILADYSPNW
EYWMAPDGSY LYVSPACVHE SGYAPQDFFD NAELMDTIIH PDDLSAWNKY GPAAAGTVSE
PLIFRIKAKD GGERWIEHVS NRVLDTSGRS LGQRGSHRDI SKRHETEQRL DFYINRDPLT
GLPNRVLFRE FLGRTLQRAE RDQSQFALLI VNLDNFNSVN QSLGHSQGDQ LLIEASKRLR
TLLPDLDAVA RISGDEFNII LNQGENAPPI DLVAQRMIDA LGIPFNLNDS SVYVGASIGI
SMYPSDGRDV ETLQSNAAAA LHQAKSRGRG MLRFFSMEMM GRSKARLTLE AALRQSVERD
ELRLYYQPQV DLISGEIVGV EALVRWQHAE RGLIPPNEFI PLAEESGYVV TLGDWVLRTA
CRQIKQWAGL GLPLRQVAVN VSAVQLSRGK LVESVKDALQ ETGIAPGMLE LEITESSVML
DRERSLETLA SLKALGVQLS IDDFGTGYSS LAYLQQLEVD KLKIDIAFVR DMTTNSNNAA
IVKAVIALGH SLGLEIIGEG VETADQARHL RTLRCDIMQG YMVSRPIPGA EMTQFMRTFK
PVVIPAGDQR AAG
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