More than 300 homologs were found in PanDaTox collection
for query gene Amir_2675 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_2675  Tetratricopeptide TPR_4  100 
 
 
870 aa  1583    Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00129539  n/a   
 
 
-
 
NC_009953  Sare_2326  ATP-dependent transcription regulator LuxR  28.42 
 
 
981 aa  143  9.999999999999999e-33  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00645479 
 
 
-
 
NC_013595  Sros_4029  ATPase-like protein  35.62 
 
 
758 aa  86.7  0.000000000000002  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.00633058  normal  0.086403 
 
 
-
 
NC_013131  Caci_2725  transcriptional regulator, LuxR family  34.05 
 
 
431 aa  81.3  0.00000000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2954  transcriptional regulator, putative ATPase, winged helix family  31.87 
 
 
1146 aa  78.2  0.0000000000007  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00262132  n/a   
 
 
-
 
NC_009953  Sare_4843  SARP family transcriptional regulator  29.46 
 
 
1151 aa  78.2  0.0000000000007  Salinispora arenicola CNS-205  Bacteria  normal  0.0675424  hitchhiker  0.00881271 
 
 
-
 
NC_013595  Sros_5515  response regulator receiver protein  51.22 
 
 
879 aa  69.3  0.0000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0430285  normal  0.701277 
 
 
-
 
NC_013530  Xcel_0094  two component transcriptional regulator, LuxR family  56.52 
 
 
220 aa  67  0.000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3437  regulatory protein LuxR  31.55 
 
 
955 aa  66.6  0.000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.756741  normal  0.0840262 
 
 
-
 
NC_009953  Sare_1270  LuxR family transcriptional regulator  29.05 
 
 
421 aa  64.7  0.000000007  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000582862 
 
 
-
 
NC_013235  Namu_3592  transcriptional regulator, LuxR family  50.79 
 
 
293 aa  64.7  0.000000007  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0118916  normal  0.053603 
 
 
-
 
NC_007333  Tfu_1778  regulatory protein, LuxR  52.73 
 
 
917 aa  62.4  0.00000004  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1706  transcriptional regulator, LuxR family  56.45 
 
 
913 aa  61.6  0.00000006  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.08592 
 
 
-
 
NC_013235  Namu_4086  transcriptional regulator, LuxR family  47.37 
 
 
959 aa  60.5  0.0000002  Nakamurella multipartita DSM 44233  Bacteria  normal  0.105743  hitchhiker  0.000559176 
 
 
-
 
NC_013521  Sked_19740  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  38.14 
 
 
216 aa  60.1  0.0000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.682926  normal 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  47.83 
 
 
218 aa  59.3  0.0000003  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_013235  Namu_0324  transcriptional regulator, LuxR family  52.46 
 
 
938 aa  59.3  0.0000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2286  regulatory protein LuxR  31.01 
 
 
961 aa  59.3  0.0000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  47.83 
 
 
218 aa  59.3  0.0000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  47.83 
 
 
218 aa  58.9  0.0000004  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5800  ATPase-like protein  55.56 
 
 
919 aa  58.9  0.0000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.168685 
 
 
-
 
NC_013510  Tcur_4682  transcriptional regulator, LuxR family  51.85 
 
 
940 aa  58.5  0.0000005  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4595  transcriptional regulator, LuxR family  51.85 
 
 
995 aa  58.5  0.0000005  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.131343  normal 
 
 
-
 
NC_013159  Svir_27950  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  46.03 
 
 
923 aa  57.8  0.0000009  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.81499  normal  0.031015 
 
 
-
 
NC_013757  Gobs_0795  transcriptional regulator, LuxR family  30.92 
 
 
983 aa  57  0.000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1370  LuxR family transcriptional regulator  53.97 
 
 
881 aa  57.4  0.000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  41.38 
 
 
225 aa  57.4  0.000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_013739  Cwoe_1434  transcriptional regulator, LuxR family  50.79 
 
 
943 aa  57.4  0.000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.271758  normal  0.860557 
 
 
-
 
NC_013595  Sros_3785  ATPase-like protein  53.23 
 
 
937 aa  57.8  0.000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.114558  normal 
 
 
-
 
NC_008705  Mkms_1388  LuxR family transcriptional regulator  53.97 
 
 
881 aa  57.4  0.000001  Mycobacterium sp. KMS  Bacteria  normal  0.0315811  normal 
 
 
-
 
NC_009077  Mjls_1404  LuxR family transcriptional regulator  53.97 
 
 
876 aa  57.4  0.000001  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  44.16 
 
 
242 aa  57  0.000002  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_013093  Amir_2956  transcriptional regulator, putative ATPase, winged helix family  35.26 
 
 
1339 aa  56.6  0.000002  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00898983  n/a   
 
 
-
 
NC_009664  Krad_2325  regulatory protein LuxR  46.43 
 
 
923 aa  57  0.000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  44.93 
 
 
218 aa  56.2  0.000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_10909  LuxR family transcriptional regulator  44.16 
 
 
882 aa  56.2  0.000003  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_11389  transcriptional regulator  41.1 
 
 
887 aa  56.2  0.000003  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_10391  LuxR family transcriptional regulator  42.86 
 
 
1085 aa  55.8  0.000004  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000000074536  normal 
 
 
-
 
NC_009921  Franean1_0072  LuxR family transcriptional regulator  59.62 
 
 
1000 aa  55.8  0.000004  Frankia sp. EAN1pec  Bacteria  normal  0.996458  normal 
 
 
-
 
NC_012791  Vapar_3549  transcriptional regulator, LuxR family  39.13 
 
 
1022 aa  55.1  0.000005  Variovorax paradoxus S110  Bacteria  normal  0.642921  n/a   
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  53.06 
 
 
222 aa  55.1  0.000006  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  41.56 
 
 
238 aa  55.1  0.000006  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  52.73 
 
 
333 aa  54.7  0.000007  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_013595  Sros_0279  response regulator receiver protein  48.39 
 
 
216 aa  54.7  0.000007  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  38.57 
 
 
237 aa  54.7  0.000008  Frankia sp. CcI3  Bacteria  normal  0.272345  normal 
 
 
-
 
NC_013172  Bfae_02400  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.17 
 
 
255 aa  54.3  0.000009  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0388  transcriptional regulator, LuxR family  57.69 
 
 
916 aa  54.3  0.000009  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0286476 
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  41.56 
 
 
250 aa  53.9  0.00001  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_013093  Amir_3178  transcriptional regulator, LuxR family  51.92 
 
 
1074 aa  53.9  0.00001  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00421599  n/a   
 
 
-
 
NC_013510  Tcur_0848  transcriptional regulator, LuxR family  50.79 
 
 
954 aa  53.9  0.00001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_0072  transcriptional regulator, LuxR family  50 
 
 
477 aa  53.9  0.00001  Eggerthella lenta DSM 2243  Bacteria  normal  0.323936  normal 
 
 
-
 
NC_013739  Cwoe_5782  transcriptional regulator, LuxR family  46.97 
 
 
974 aa  53.9  0.00001  Conexibacter woesei DSM 14684  Bacteria  normal  0.239906  normal  0.713448 
 
 
-
 
NC_011894  Mnod_0855  two component transcriptional regulator, LuxR family  43.08 
 
 
223 aa  53.9  0.00001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.082304  n/a   
 
 
-
 
NC_014165  Tbis_2085  LuxR family ATP-dependent transcriptional regulator  47.17 
 
 
913 aa  54.3  0.00001  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.741908 
 
 
-
 
NC_009767  Rcas_1228  LuxR family transcriptional regulator  48.15 
 
 
204 aa  53.9  0.00001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.118696  normal 
 
 
-
 
NC_013093  Amir_2245  transcriptional regulator, LuxR family  47.3 
 
 
956 aa  53.9  0.00001  Actinosynnema mirum DSM 43827  Bacteria  unclonable  0.00000425814  n/a   
 
 
-
 
NC_013739  Cwoe_0968  transcriptional regulator, LuxR family  44.16 
 
 
938 aa  53.5  0.00001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_37860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  48.53 
 
 
221 aa  53.1  0.00002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_0354  two component transcriptional regulator, LuxR family  48.39 
 
 
222 aa  53.1  0.00002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_19250  transcriptional regulator, LuxR family  50 
 
 
894 aa  53.5  0.00002  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.368916  normal  0.454776 
 
 
-
 
NC_013204  Elen_0597  transcriptional regulator, LuxR family  37.29 
 
 
493 aa  53.5  0.00002  Eggerthella lenta DSM 2243  Bacteria  normal  0.882562  normal 
 
 
-
 
NC_013131  Caci_4238  transcriptional regulator, LuxR family  48.15 
 
 
919 aa  53.5  0.00002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.5259 
 
 
-
 
NC_013093  Amir_4511  two component transcriptional regulator, LuxR family  44.58 
 
 
226 aa  53.1  0.00002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.11054  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  45.61 
 
 
224 aa  53.5  0.00002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013947  Snas_2785  transcriptional regulator, LuxR family  44.9 
 
 
1013 aa  53.5  0.00002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  52.73 
 
 
222 aa  53.1  0.00002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_1214  regulatory protein, LuxR  44.83 
 
 
930 aa  53.5  0.00002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.428987 
 
 
-
 
NC_008726  Mvan_5002  regulatory protein, LuxR  41.18 
 
 
940 aa  53.1  0.00002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0207  transcriptional regulator, LuxR family  50 
 
 
435 aa  53.5  0.00002  Conexibacter woesei DSM 14684  Bacteria  normal  0.314415  normal 
 
 
-
 
NC_013947  Snas_3419  transcriptional regulator, LuxR family  48 
 
 
909 aa  53.5  0.00002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00522021 
 
 
-
 
NC_013739  Cwoe_0446  transcriptional regulator, LuxR family  35.36 
 
 
963 aa  53.5  0.00002  Conexibacter woesei DSM 14684  Bacteria  normal  decreased coverage  0.00639292 
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  38.57 
 
 
237 aa  53.1  0.00002  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_009767  Rcas_0145  LuxR family transcriptional regulator  44.07 
 
 
454 aa  53.5  0.00002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0427  LuxR family transcriptional regulator  45.59 
 
 
544 aa  52.8  0.00003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1970  transcriptional regulator, LuxR family  50.94 
 
 
835 aa  52.4  0.00003  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.0000157383  n/a   
 
 
-
 
NC_010338  Caul_1533  LuxR family transcriptional regulator  48.21 
 
 
137 aa  52.8  0.00003  Caulobacter sp. K31  Bacteria  normal  0.717435  normal  0.7082 
 
 
-
 
NC_013204  Elen_2655  transcriptional regulator, LuxR family  33.67 
 
 
470 aa  52.8  0.00003  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.149331 
 
 
-
 
NC_008705  Mkms_0437  LuxR family transcriptional regulator  45.59 
 
 
544 aa  52.8  0.00003  Mycobacterium sp. KMS  Bacteria  normal  0.139362  normal  0.0303285 
 
 
-
 
NC_008740  Maqu_2693  regulatory protein, LuxR  41.56 
 
 
891 aa  52.4  0.00003  Marinobacter aquaeolei VT8  Bacteria  normal  0.602772  n/a   
 
 
-
 
NC_014151  Cfla_2563  two component transcriptional regulator, LuxR family  45.45 
 
 
229 aa  52.8  0.00003  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.127898  normal 
 
 
-
 
NC_013739  Cwoe_5220  transcriptional regulator, LuxR family  50 
 
 
960 aa  52.4  0.00003  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  41.43 
 
 
304 aa  52.8  0.00003  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_013235  Namu_0281  transcriptional regulator, LuxR family  44.87 
 
 
947 aa  52.8  0.00003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_3004  two component transcriptional regulator, LuxR family  57.69 
 
 
223 aa  52.4  0.00004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0522265  n/a   
 
 
-
 
NC_008541  Arth_1221  LuxR family transcriptional regulator  40.98 
 
 
910 aa  52.4  0.00004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  51.02 
 
 
339 aa  52.4  0.00004  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_3766  response regulator receiver protein  53.57 
 
 
539 aa  52.4  0.00004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.484632  normal  0.834357 
 
 
-
 
NC_009338  Mflv_3579  two component LuxR family transcriptional regulator  48.28 
 
 
217 aa  52  0.00004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.393396  normal  0.0540104 
 
 
-
 
NC_013131  Caci_6057  two component transcriptional regulator, LuxR family  44.44 
 
 
217 aa  52.4  0.00004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0474  response regulator receiver protein  43.33 
 
 
471 aa  52.4  0.00004  Roseiflexus sp. RS-1  Bacteria  normal  0.40168  normal  0.0487434 
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  40 
 
 
234 aa  52.4  0.00004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_011884  Cyan7425_5215  two component transcriptional regulator, LuxR family  45.45 
 
 
217 aa  52.4  0.00004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5349  transcriptional regulator, LuxR family  46.55 
 
 
900 aa  52  0.00005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0835513  normal  0.0775284 
 
 
-
 
NC_013165  Shel_22730  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  48.08 
 
 
502 aa  52  0.00005  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0012  transcriptional regulator, LuxR family  42.17 
 
 
928 aa  52  0.00005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.111668  normal 
 
 
-
 
NC_013739  Cwoe_5590  transcriptional regulator, LuxR family  48.28 
 
 
940 aa  52  0.00005  Conexibacter woesei DSM 14684  Bacteria  normal  0.508462  normal 
 
 
-
 
NC_009338  Mflv_1351  response regulator receiver protein  46.67 
 
 
189 aa  52  0.00005  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.631825  normal  0.574707 
 
 
-
 
NC_013204  Elen_0436  transcriptional regulator, LuxR family  46.15 
 
 
501 aa  52  0.00005  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2836  two component LuxR family transcriptional regulator  47.46 
 
 
207 aa  51.6  0.00006  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.644859  normal 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  43.08 
 
 
292 aa  51.6  0.00006  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
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