Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_3178 |
Symbol | |
ID | 8327368 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | + |
Start bp | 3668122 |
End bp | 3671346 |
Gene Length | 3225 bp |
Protein Length | 1074 aa |
Translation table | 11 |
GC content | 80% |
IMG OID | 644943695 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003100935 |
Protein GI | 256377275 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00421599 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGGCTGG TGGACCGCGA CGGGCAGTGC GAGGCGCTGG CCGCCCTGCT GGAGGGCGCG GCGGGCGGGT GCGGGGGCGC GGTGCTGCTC AGGGGCGCGC CTGGGCACGG GAAGACCGCG CTGCTGGGGC GCCTGGTCGC GCTGGCCGAG GCGGCGGGGT TCCGGTGCCT GGTGGTCGAG GCGGACGCGC TGCCCGAGGT GGCTGAGGTC GCGGCGGAGG TCGCTGATGG CGGGGGCGCC CTGCTGGTGG CCGTGGACGA CGCCGGGGGG GCCGACGTGG GCGCGCTGCT CGACCTGGCG GCGTGGGCCA GACGCGCGCC CGCCGTGCTC GCGCTCACCG ACCTGCCACG CCTGCCCGAC GACGACCCGC TGGGCGCCGT GGCGCGCACG CCGGGCGCGC TCGTGCTCGA CCTCCCGCCG CTGCGGGCGG AGACCACCGC CGCGCTGCTC GACGGGACCC CGTGGCCGGT GACCGGGGGG AACCCCGCGC TGGTGCGCGG GCTCGCCCGC GACCTCGCGG CGGGGGAGGC GGGACCGGGG GCCGCTTACC GGGCCGCCCT CGCCGGGGTG CTCGACCGCT GCGGCGCCGA GGTGGCCGCT GTCGCGCACG CCTCCGCCGT GCTCGCCGTG CTCCCCGCCG GGCCCGCCGC CGCGCTTCCC GCCGGGCCCG CCGCCGTGCT CCCCGCCGGG CCCACCGCCG CGCTTCCCGG CGGGCTGCTT CCTGGTGCCG CGCTTCCTCA CGGGGCCCTT CCCGCTGCTG CGCGCCCCGG CGTGGTGTGC CCAGACACCG CGCCTCCCGG CGGGGCGCTT CCCGACGGCG GGGCGCGATC GCTCGCCTCT GGCGCGGCGG GCGTCCGGCA GGGGGGAGTG GTGCCTCTCG CGCCCGGTCG GACCGGTGCC TCGCCGGGTG GCGCGGAGCC GCTCCTGCTC GGCCCGGCGT CTGGGGTGGG GGGTGATCCC GCCGGTGGGG ACGGGACCTC CGCGTCCGGC CGGATGGCTG CGGACCACGT CGTTCCCGGT GGTGCCCGAC TCCGCGCGCC CTCGGGTCCC GCCGCACCCG TCGACCTGGT CGCCGACCTG CTCGGCCGTG CTCCCGCCTC CGTCGCCGAC GCCCGCGCCC GCCTCGTGGG AGCCGGGCTC GACCGGGCCG ATCCCGCCGC TGTGCTGGAC GTGCTGCCCG CCGCCCGGCG CGCCGAGCTG CACCTGCGCG CCGCGCGGAC GTTGCACGAG CGCGGTGAGT CGCCCGCCTC CGTCGCCGAC CACCTCGTCA CCGCCGGCCT GCCTGCGCCT GCCTGGGCCG TCGACGTGCT CGTCGCCGCC GCCGACCACG CGCTCGCCGC CGACGACGTG CCCACCGCCG TCGACCGGCT CGCCGCCGCC CACCGCCGGG ACGAGGCAGA CCCACCGCGG GGCGTCCACC CGCGCGGAGT CCCGGACCCG GCCGTCGCCG CCCGCCGGTG CGGGTGCGCG GACCGGACGG CCGCGCCCGC CGACCGCCGC ACCTCTCCCG AGCCCACGGC CCTGTCCGAG CCCGCAGCCG TCGTCGGGCC CGCGCTCACC GCCCGCCTCG CCCGCGCGCG CTGGCAGCTC AACCCGGCTG CCGCGCTGTG CCACCTCGAC CCGCTCGCCG ACGCCCTCGC CGCCGACCCC GCCGCGCTCG CCCCCCGTGA CGCCGCCGCG CTGGTGCGCC AGCTCGTCTG GCACGGGCGC ACCGCCGCCG CCGGGCGGGT GCTCGCCGCG CTGCGCGCCC GCGAGCACGC CGCCGAGCTG CCCGACCTGG AGACCTGGCT CTCCCTCGCC TGCCCGCCAC TCGCCGCCTC CCGCCGCACC GCCTTCTCCC GCACCGCCTT CTCCCACACC GCCTTCTCCC ACAGCGCTGC CCGCCACGGC AGCGCCCTCC CCCCCAACGC TCTCCACCCC GGCGCCCTCC ACGCCAACGC CCCGCACACC TCCGCTTCTC ACACCGCTGC CCACCAGCGC GGCACCCCCC ACCCCGCGGC CCTCAACCCC ACCACCCCGC CCCCGAGCCG CGTCGACCCA TGGTTGCGCG AGGCCGCCAG CCTGGTCGGC GGGTTCGTCC TCGGGGACCA GCGCCGAGCC GCCGCCGAGG CCGCGCACTA CCTGCGCCAC GCCCAGCTCA GCCACACCTC CCCCTGGTCC GAGGAACCCG CGCTGCTCGC GCTGCTCGCC CTGGTGCGCG CCGACCGCGC CGTCGAGGCC GACCGGGCCT GCGCGCGGCT GCTCGACGAG GCGCGCTCCC GGCGCGCGCC CACCTGGGTC GCCTCCTTCG CCGCCGCCGC CTCGGTGATC GCGCTGCGGC TCGGCGACCT CGCGGGCGCA GCCGGGCACG CCCGCGCCGC GCTCGACGCC GTCCCCGCGC ACGGCTGGGG CGCGGGCGTC GGGCTGCCGC TGGGCTCGCT GATCCTCGCC GACACCCTGC GCGGGCGGCG GCGGGAGGCC GGGCGGCACG TCACCGCGCC CGTGCCGGAC GCCCTCTTCG ACGGCCCCGC CGCCCCGCAC TACCTGCACG CGCGCGGCCA CCACCACCTC GCGTCCGGGC GGGACCACGC GGCGCTCGCC GACTTCCTGG CGTGCGGCGA CCTCCTGCGC TCCTGGAGCC TCGACCTGCC GGGCCTCGCG CCGTGGCGCA CCGGGGCCGC CGAGGCGTGG ACCCGCCTGG GCAACCACGA CCGAGCCCGG CGGCTGGTGT TCGACCAGCT CGCCACGACC GGCGCCGACG CGGGCCGCCC CAGGGCGCTG GCGCTGCGCG CGCTCGCCTC GCTCAGCCCG CCGACCCGCC GCCCGCACCT GCTCGCCGAG GCCGCCGACG CCCTGGAGCG CTGCGGCGAC CGCTACGAGC TGGCCGCCAC CCTCGCCTGC CTCGGCGCGG CGCACCACGC CCTCGGCGAC CACCGCCGCG CCCGCGCCGT GCTGCGCAGG GCCTGGCACC TGGCCAGGGC GTGCGGCGCG CGACCGCTGT GCGCGCGCCT GGAACCGGAC GCGGCCGACC CCGTCGCGCA CGACACCAGC GGCCTCACCG GCTCCGAGCG CAAGGTCGCC GCGCTGGCCG TCACCGGCCT CACCAACCGG CAGATCGCCG AGAAGCTGTT CGTCACCCCG AGCACCGTCG AGCAGCACCT GACCAGGGTG TTCCGCAAGC TGCGCGTCAC CCACCGCACC GACCTGCCCA CCACCCTGCA CGCCGACCTG ACCACCCCCG CCTGA
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Protein sequence | MRLVDRDGQC EALAALLEGA AGGCGGAVLL RGAPGHGKTA LLGRLVALAE AAGFRCLVVE ADALPEVAEV AAEVADGGGA LLVAVDDAGG ADVGALLDLA AWARRAPAVL ALTDLPRLPD DDPLGAVART PGALVLDLPP LRAETTAALL DGTPWPVTGG NPALVRGLAR DLAAGEAGPG AAYRAALAGV LDRCGAEVAA VAHASAVLAV LPAGPAAALP AGPAAVLPAG PTAALPGGLL PGAALPHGAL PAAARPGVVC PDTAPPGGAL PDGGARSLAS GAAGVRQGGV VPLAPGRTGA SPGGAEPLLL GPASGVGGDP AGGDGTSASG RMAADHVVPG GARLRAPSGP AAPVDLVADL LGRAPASVAD ARARLVGAGL DRADPAAVLD VLPAARRAEL HLRAARTLHE RGESPASVAD HLVTAGLPAP AWAVDVLVAA ADHALAADDV PTAVDRLAAA HRRDEADPPR GVHPRGVPDP AVAARRCGCA DRTAAPADRR TSPEPTALSE PAAVVGPALT ARLARARWQL NPAAALCHLD PLADALAADP AALAPRDAAA LVRQLVWHGR TAAAGRVLAA LRAREHAAEL PDLETWLSLA CPPLAASRRT AFSRTAFSHT AFSHSAARHG SALPPNALHP GALHANAPHT SASHTAAHQR GTPHPAALNP TTPPPSRVDP WLREAASLVG GFVLGDQRRA AAEAAHYLRH AQLSHTSPWS EEPALLALLA LVRADRAVEA DRACARLLDE ARSRRAPTWV ASFAAAASVI ALRLGDLAGA AGHARAALDA VPAHGWGAGV GLPLGSLILA DTLRGRRREA GRHVTAPVPD ALFDGPAAPH YLHARGHHHL ASGRDHAALA DFLACGDLLR SWSLDLPGLA PWRTGAAEAW TRLGNHDRAR RLVFDQLATT GADAGRPRAL ALRALASLSP PTRRPHLLAE AADALERCGD RYELAATLAC LGAAHHALGD HRRARAVLRR AWHLARACGA RPLCARLEPD AADPVAHDTS GLTGSERKVA ALAVTGLTNR QIAEKLFVTP STVEQHLTRV FRKLRVTHRT DLPTTLHADL TTPA
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