| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3549 |
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| Symbol | |
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| ID | 7972175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3741726 |
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| End bp | 3744794 |
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| Gene Length | 3069 bp |
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| Protein Length | 1022 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 644794134 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_002945432 |
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| Protein GI | 239816522 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3899] Predicted ATPase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.642921 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGCAC TGGACCGGAT CGGCTGTCAT CGCTGCGGGC GCGTTCGCCT GCATGCCGAT
GCGCCATGTC CGGCCTGCGG TGCGGCGCCT GCTGCGGGAG CGGCGGTGGC GGGCGCGAGC
GAGCCCTTCG TCGGGCGCCG CGGCGAATTG CAGCTGGCGC ACGATGCGCT CGGCGGGGCG
CTGGCCGGGC GCGGCCGCGT CGTCATGCTG AGCGGCGAGG CCGGCATCGG CAAGACGCGG
CTCGCCCAGG AGGTGGCGAC GCTGGCCCTG CGGCGCGGCA TGCTGACCCT GTGGGGCCGC
TGCCTCGAGG AACCCGGCGC GCCGCCCTTC CTGCCGTGGA CCCGCGCGAT GCAAGCCTGC
CTGCGTGCCT GCCGCGACGA GCGCCTGCCC GCGCTGCTCG GGCGCGAGGC CGCCGCGGCG
GTCGAGATCG CGCCCGAGCT TGCCGGGCGG CTGCCCCCCG GCACCGCGCT GCCGGCGATC
GGCGAGGGCG ACCAGGCACG CTTCCGGCTG TTTGCCTCGA TCACGCATTT CTGGCGCCAG
GTGGCGACGC TGCGTCCGCT GCTGCTGATC CTGGACAACC TGCACTGGGC CGACGCCTCG
TCGCTGCGGC TGCTGGCCTT CATCGCCCAG GACGTCGGCG AATCCCGCAT CCTGCTGCTC
GGCTCCTACC GCGAGGCCGG CCTGTCGCGC CAGCATCCGC TGGCTGCCAC CCTGGCCGAG
CTGCTGAACA CCCGGCAGTT CTGCCGCCTG CCGCTGCAAG GGCTGAGCCT CGAGGAAACC
GAGCGGATGG TGGCCGCGGC CAGCGCCGTG ACGCCGCCGC CCGCCGTGAT CGCGACCATG
CATCGCCGCA CCGAGGGCAA TCCGCTGTAC CTGGTCGAGA CGCTGCGCTT CCTGCAGCAG
GGCCCCTGCG GCAACGACCC GCACGCCGCC GCGGCGCGGG CCGAGACCGT GCCGAGCGGC
ATCCGCGCGG TGATCGGCCA GCGGCTCAAC CAGCTGTCGG CGCCGTGCTG CGAACTGCTC
GCGATCGCCG CGTGCATCGG CCGCGACTTC GACTTGCCGC TGCTGGCAGA GCTGGCCGGC
GCCGGCAGCG AGGCCGCGTT GCTGGGCAGG CTCGACGAGG CGCTGGCGCA GCGCGTCATC
GAGGCCGTGC CGCCCGGGCC GCAGTACCAG TTCAGCCACG TGCTGATCCG CGAGGTGCTC
TATGACGAGC TGCCCGCGGC GCGCCGCGTC GCGCTGCACG GGCGCATCGC CGAGTCGCTC
GAGGCGCGCC ACGCCGGGCG GCTCGACGCG GTGCTGGCGC AGCTCGCCTA CCATGCGGCC
GCGGCCCTGC CCGCGGGCAA CGCGGCGCGC GCGCTGGACA TCGCGCAGCA GGCCGCCGCG
CGCGCCGTGG CGCTGATGGC GCACGAAGAA GCCCTGCGCT GCTACCGCCT CGCGCTGCAG
TTGCAGGAGC GCTGGCTGCC GGCCGAGCGC GCGCGACATG GCGCGCTGCT GCTGGCGCTC
GGTGCGGTGC AGATGCATGC CGGCGAGAAC GATGCCAGTG CCGCCACCTT CCTGGAAGCG
GCCACGCTGG CGCGCGCGCT CGGCGACGCG GACCTGTTCG CGCAGGCGGC GCTCGGCTTC
GAGAACAACG GCTGGCGCAT CAGCCACCCG GGCGAGCAGG CGGCGGCGCT GCTCGAAGAG
GCGCTGGCGC CGTCAGACGG TTTCGACGCC GCGCTGCGGG TCGACCTGCT GGCCGCGCTG
TGCCGCGCCT GCATCTTCTG CGGCCGCCAG CCGCAGGCCA ACGCGGCGCA GCACCAGGCC
GTTGCGCTGG CGCGCGAACT GGCGATGCCG CACCCGCTGT TCAAGGCGCT GGCGGCAATC
CTGCCGGCGC GCGCCGATCC CACCCAGCTC GACGAGCGCC TGCGCTGCGC GCGCGAGGCA
CTCGAAGTGG CCGAGCGTGC CGGCCACATG GAGTGGGTCG ACGCGCTGAC CGGCTGGTAC
TTCGGCGACC TGGTCGAGAA GGGCGAACTC GCCGCGGCGC GCCCGCTGGC CCAGGTCCAT
ACGCGGGTGG CGGATGCCAT CCGCCAGCCC TTCATGCAGG CCATGGGGCT GGCCAGCCTC
ACGCTGCTCG CAGCCTACGA GGGCCGCTTC GCGGATGCCG AGCGGCTGGC CGGCCAGACC
TTCACGATCG GGCAGCGCTT CCTGCCCGGC AACGCACAGG GCGCCTACAG CCTGCAGATC
TTCGTGCTGC GGCGGCACCA GGGCCGCCTT GGCGAGGTGC TGCCGGTGCT GCGCGGCCTG
GTCGGCAGCG TGCCGCGCGA CAGCCTCTGG CAGCCCGGCC TCGCACTGAT CTGCGCCGAG
CTCGACCTGC ACGAGCCGGC CCGCGAGGCC TACGAGGCAC TCGCGGCCGA CGGCTTTGCC
GGCATTGCGC GCGACGGCAT GTGGCTGACC AACACCGTCT TTGCGGCCGA GGTCTGCGCC
CGCCTCGGCG ACCGGCCGCG CGCGGCGCTG CTGTACCGGC TGCTCGCGCC TTACGCCGGC
CGCAACGTGG TGACCGGCAC CAACATTGCC TGCTTCGGCG CCGTGGACCG CTACCGCGGC
ATGCTCGCCG CACTGGCCGG CGACGATGCG AACGCCGCGG TGCATCTGGA AGCCGCCGTT
GCCCTGGACG AGCGCTGCGG CGGCCGCCCC TGGCTGGCGT ACAGCCGCTT CGAGTGGGCG
CGCTGGCTGG CCGCGCGCGG CGATGCAGCG GCCGCGGGCA CGCAGCTCGA TGCGGCACTC
GCGCTCGACC GCGAACTGGG CATGGCCAGC CTGGCGCGGC GCTGCGAGGC GCTGCAGCGC
GAACTGGCAG GCGCCGGCGC GATGCCGTCC GCGTCCCCCG AGGGCCTGAG CCGGCGCGAG
CTTGCCGTGC TGCGGCTGCT CTGCGCCGGC TGCAGCAACC AGGCGATCGC CGAGCGCCTG
TTCATCAGCC CGCACACGGT GGCGCACCAC GTGCGCCACA TCCTCTCCAA GACCGACTGC
CGCAGCCGCA CCGAAGCCGC GGCCTGGGCG CACCGCCACC GCGTCGCCGA GGGCCTGGAG
CCATCCTGA
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| Protein sequence | MAALDRIGCH RCGRVRLHAD APCPACGAAP AAGAAVAGAS EPFVGRRGEL QLAHDALGGA
LAGRGRVVML SGEAGIGKTR LAQEVATLAL RRGMLTLWGR CLEEPGAPPF LPWTRAMQAC
LRACRDERLP ALLGREAAAA VEIAPELAGR LPPGTALPAI GEGDQARFRL FASITHFWRQ
VATLRPLLLI LDNLHWADAS SLRLLAFIAQ DVGESRILLL GSYREAGLSR QHPLAATLAE
LLNTRQFCRL PLQGLSLEET ERMVAAASAV TPPPAVIATM HRRTEGNPLY LVETLRFLQQ
GPCGNDPHAA AARAETVPSG IRAVIGQRLN QLSAPCCELL AIAACIGRDF DLPLLAELAG
AGSEAALLGR LDEALAQRVI EAVPPGPQYQ FSHVLIREVL YDELPAARRV ALHGRIAESL
EARHAGRLDA VLAQLAYHAA AALPAGNAAR ALDIAQQAAA RAVALMAHEE ALRCYRLALQ
LQERWLPAER ARHGALLLAL GAVQMHAGEN DASAATFLEA ATLARALGDA DLFAQAALGF
ENNGWRISHP GEQAAALLEE ALAPSDGFDA ALRVDLLAAL CRACIFCGRQ PQANAAQHQA
VALARELAMP HPLFKALAAI LPARADPTQL DERLRCAREA LEVAERAGHM EWVDALTGWY
FGDLVEKGEL AAARPLAQVH TRVADAIRQP FMQAMGLASL TLLAAYEGRF ADAERLAGQT
FTIGQRFLPG NAQGAYSLQI FVLRRHQGRL GEVLPVLRGL VGSVPRDSLW QPGLALICAE
LDLHEPAREA YEALAADGFA GIARDGMWLT NTVFAAEVCA RLGDRPRAAL LYRLLAPYAG
RNVVTGTNIA CFGAVDRYRG MLAALAGDDA NAAVHLEAAV ALDERCGGRP WLAYSRFEWA
RWLAARGDAA AAGTQLDAAL ALDRELGMAS LARRCEALQR ELAGAGAMPS ASPEGLSRRE
LAVLRLLCAG CSNQAIAERL FISPHTVAHH VRHILSKTDC RSRTEAAAWA HRHRVAEGLE
PS
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