| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4238 |
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| Symbol | |
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| ID | 8335592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 4806179 |
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| End bp | 4808938 |
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| Gene Length | 2760 bp |
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| Protein Length | 919 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644957341 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_003114943 |
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| Protein GI | 256393379 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3899] Predicted ATPase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.5259 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCGCG CCACGAGGTC CCCGTTGCTC GGCCGCGGCC GTGAGCTGGA AAAACTGGAC
CGTCTGATCC GCGACGTGCG CGACGGACGC AGCCGGGTGC TGGTGCTGCG CGGCGACGCC
GGCATCGGCA AAACGGCGCT GCTGGAGCAC GTCGCGGCGC AGTCCGGGCA GCTGCAGATC
GCCCGCACCG CCGGCGTCGA GGCCGAATCC GACTTCGCCT ACTCCACGCT GCAACAGCTG
TGCGCTCCGC TTTTGTCACA TCTGGACGGT CTGCCGCCGG TCCAGCAGGA CGCGCTGCGC
GTGGCGTTCG GTCTGAGTTC GGGCACGCCG CCGGAGATGA TGGCGGTCGG CATGGCGGTC
CTGGGCCTGT TCGCCGAGGC CGCGAGCGAG ACGCCGCTGG TCTGCCTGGT CGACGACGCG
CAGTGGCTGG ACCTGATGTC ACGCCTGATC CTGGCCTTCG TCGGGCGGCG GCTGGACGCC
GAGGCGGTGG CGCTGATCTT CGCCGAGCGG ACCGCCGACG GCGAGGCGGA GGCGCCGGAC
GCGCCGGACG GGCCGCACGC GCCAGCCGCG CTGCCCGGGC TGACCGGACT CCCGGATCTG
CCCCTGACCG GACTCACCGA CGCCGACGCC CGCACCCTGC TGGAGGAGGC ACTGCCCGGA
CCGGTGGACG CCCGCGTCCG GGACCGGATC GTCGCCGAGA CCGGCGGCAA CCCCTTGGCG
TTGCGGGAAC TGCCGCGCAG CCGCTCGGCA GCGGAGCTGG CGTTCGGCTT CGGCGGACAC
GGCGCGGCAG GGCTGGCGAC CCGCGTCGAG GACGGCTTCC GCCGCCGCGT CGAAGCGCTG
CCGCCGGACA CCCGCACCCT GCTGCTCGTC GCGGCGGTCG AACCGGTCGG GGACGCACCG
CTGCTGTGGC GCGCGCTGGA GCTCCTGGAG GTCGGACCAG AGGCTGCGGC GCCTGCGGAG
ACTGCGGATC TGATCTCCAT GGGCGCCCCG GTCCGCTTCC GCCACCCGCT GGTGCGCTCG
GCGGTCTGGC GCGGCGCCGA TGCCGCGGCG CTGCGTGCGG CACACCGCGC CCTGGGCGAG
GCCACCGACG CCGACCGCGA CCCCGACCGG CGCGCGTGGC ATCAAGCGCA TGCCGCCGTC
GAGCCCGATG AGGACGTCGC CGCAGCCCTG GAAAGCTCCG CCGACAGGGC CCTGGCTCGC
GGCGGCCGAG CAGCCGCGGG CTCCTTCCTG GAACGCGCCG CCGCGCTCAC CCCCGACTCG
CAGGGCCGCG CGCGCCGAGC GTTGGCAGCG GCACAGGCCT ACCTCGATTC GGGACTGCCA
GTCCGGGTCC CCGATCTGCT CGCCGCCGCC GAACTCGGTC AGCTGGACGC GCTGCAACGC
GCGACCACAG CCCGGCTGCG CGCGATGGCG ACGCACGTCG TCAACCCCGG ACTCGGGGCG
GTCGAACCAC TGCTGGACGC GGCGCACGGC TTGCGCGATC TGGACCCGGC CGCCGCGCGC
CGCACGTCCC TGACTGCGCT CGGCGCGGCT CTCAGCACGG GACGCAACGA CCCGGACGGA
CTGCGCCGCG CCGCCGCGAT CGTCCGCGAC CTGCCGACCG ACGACGACGC GGCCGGGAAG
ATCGTGCACG GCTTGATCTC CTGGGCCGCG GACGGACCGG TCGCCGCGAT CGCGCCGCTG
GAGCAGGCGC TGCACTCCTT CACCGATACC AAGGACCTGC CACTGCTGTG GTTCGCCGCG
AACGTGGCGA TGGAGATGGG CGACCTGCGG GCGGTCCAGG ACATCACCGA TCAGGCGGTG
CGCTTCGCCC GCAGCACCGG AACGCTCTCG ATCCTGCCGT CGGCACTGAC CTACCGAGCC
GCCGCTGTGG GATACGCCGG AAGTTTCTCA GAGGCCGATG ATCTGCTCAC TGACGCCGCG
GCCGCCGAGC AGGCGATGGG TCTGGCTGTG TACCGGGCCA CCAAAGCCAT GGTCGCGGCG
CACCAAGGGC ACAAACAGCC GACGCTGGAC CTGGCCGAGT CCATGGACCG CGACGGCGAG
CAGCACGGCT TGGGACGGCT GATCGGCCTG GCGGCGTACG CGCGCGCGGT GCTGCACAAC
GGCTTCGGCG ACTACCCGCT GGCATTGCAG GCCGCGAACC GGGGTCTGGA GTACCCGGAC
TTCGCCGTGC ACCACGGCAC GCTCAGCGAG CTGGTCGAGG CCGCGACCCG GGCCGGCGAC
CCCCAGGCGG CGGCGCGCGC CTGCGGTCAG CTGGCCGACT GGAGCCAGGC CGGCACGCCG
TGGGCCCTCG GCGCCTACGC ACTCGCCGAC GCCCTCACCG GCGCCCCCAA AGTCGCCGAA
GACCGCTACC GCGAGGCCGT CGAGCACTTC ACCGAGGGCG GCCTCGACAC CTTCGCAGCC
CGAGCCCGCC TGCTGTTCGG CGAGTGGCTG CGCCGCCAGA ACCGCCGCGC CCAGGCGCGC
GAAGAGCTGC GCGCCGCCCA CGAGGCATCG GTAGCCATCG GCATGGAGGC CTTCGCCGAA
CGCGCCCGCC GCGAACTCCT CGCCACCGGA GAAACCGTCC GCCGGCGCAC AGTCGGCGGC
CCGATCCTGA CGCCGCAAGA GGCCCAGATC GCCCGCCTCG CCACAGCCGG CCACTCGAAC
GCCGAGATCG GCGCGGAGCT GTTCCTGAGC CCCCGCACCG TCGAATGGCA CCTGCGCAAC
GTCTTCGCCA AGCTGGGCAT CACCTCGCGC CGCGAACTCG GCGACGCACT GAGCCCCTAG
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| Protein sequence | MPRATRSPLL GRGRELEKLD RLIRDVRDGR SRVLVLRGDA GIGKTALLEH VAAQSGQLQI
ARTAGVEAES DFAYSTLQQL CAPLLSHLDG LPPVQQDALR VAFGLSSGTP PEMMAVGMAV
LGLFAEAASE TPLVCLVDDA QWLDLMSRLI LAFVGRRLDA EAVALIFAER TADGEAEAPD
APDGPHAPAA LPGLTGLPDL PLTGLTDADA RTLLEEALPG PVDARVRDRI VAETGGNPLA
LRELPRSRSA AELAFGFGGH GAAGLATRVE DGFRRRVEAL PPDTRTLLLV AAVEPVGDAP
LLWRALELLE VGPEAAAPAE TADLISMGAP VRFRHPLVRS AVWRGADAAA LRAAHRALGE
ATDADRDPDR RAWHQAHAAV EPDEDVAAAL ESSADRALAR GGRAAAGSFL ERAAALTPDS
QGRARRALAA AQAYLDSGLP VRVPDLLAAA ELGQLDALQR ATTARLRAMA THVVNPGLGA
VEPLLDAAHG LRDLDPAAAR RTSLTALGAA LSTGRNDPDG LRRAAAIVRD LPTDDDAAGK
IVHGLISWAA DGPVAAIAPL EQALHSFTDT KDLPLLWFAA NVAMEMGDLR AVQDITDQAV
RFARSTGTLS ILPSALTYRA AAVGYAGSFS EADDLLTDAA AAEQAMGLAV YRATKAMVAA
HQGHKQPTLD LAESMDRDGE QHGLGRLIGL AAYARAVLHN GFGDYPLALQ AANRGLEYPD
FAVHHGTLSE LVEAATRAGD PQAAARACGQ LADWSQAGTP WALGAYALAD ALTGAPKVAE
DRYREAVEHF TEGGLDTFAA RARLLFGEWL RRQNRRAQAR EELRAAHEAS VAIGMEAFAE
RARRELLATG ETVRRRTVGG PILTPQEAQI ARLATAGHSN AEIGAELFLS PRTVEWHLRN
VFAKLGITSR RELGDALSP
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