Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Snas_5349 |
Symbol | |
ID | 8886558 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stackebrandtia nassauensis DSM 44728 |
Kingdom | Bacteria |
Replicon accession | NC_013947 |
Strand | - |
Start bp | 5684186 |
End bp | 5686888 |
Gene Length | 2703 bp |
Protein Length | 900 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003514076 |
Protein GI | 291302798 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0835513 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0775284 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGGCGA ATCGCGTGGT CAGTCCGGCG TTCATCGGAC GTGCCGACGC CCTGTCGTCG CTGTTGGCCG CGTTTCGTTC CGCCGGTGCG GCTCCGGGGG TCGCGCTGAT CGCCGGGGAG GCCGGGATCG GGAAGTCCCG GTTGGTGAGC GAGTTCGCCG CTTCGCTGGG TGGCGGGGCC CGGGTGGTGA CCGGCGGTTG TACCCAGTTG GACGACGGCT TGGCCTACGC GCCGTTCGTC GCCGTGTTGC GGGCTTTGGT TCGCGAGCTG GGAGCCGAGC GGGTCGCTGA GATCCTGCCG GGGCCCGGAC GTGAGCTGGC GCGCTGGTTT CCGGAGCTCG GGGCCGCGCA GTCGGGGGAC AAACTGCGGT TGTACGAGGA GATTCTGACG CTGGTCGAGG CCGCCGCGTC GAAGCCGCTC GTGGTGGTCA TCGAGGATCT GCACTGGGCC GATGCCGCCA CCGCCGAGCT GCTGGGGTTT CTGGCGCGGA ATGTGAACCG GCCCGGGATC CTGTTGGTGG CAACGTATCG GGACACCGAG CCCGCGACCG GGCCGCTGCT GTCCGAGTTG CGGCGTGGTG GCCGGACCAC TCAGTTGCGA CTCGGGCCGC TGACCCGTCA CGAGGTCGGA CGTCAGTTGG CGGCGATCCT CGGCGACCGT CCCGAACCTG ATGTCGCCCG GCGGATCCAC GAACGCAGCG ACGGTAATCC GTTGTTCGTG GAGGCCTTGG CCCAAAGTGG TCAGAGCACT CCGGACGCCG AGTTGCTGCT GCATGTTCCG AGGACGCTGC CGGATGCGCT GCGGCGGGTG CTGCGGGCGG CCTCGGTGGC CACGGGTGAG GTAGCGCATG CCTTGCTGGC CACGGTTTCG GGCAACGACG AGGACGCGCT GGACGATTTG GTCCGACCGC TCGTCGAGGG CGGCCTGTTG CTGCCCACAG AGGATGGTTA CGTCTTCCGG CACGATCTGA TCCGGCACGC CGTGTACGAG GACCTGCTGC CCGGTGAACG CAAACGGTTC CACGCACGCT ACGCCGAGGC GTTGCGCGAC AACGGGACCC CGTCTCAGTT GGCCACGCAC ACCTACGCGG CCGGGCAGCT CGGCCCGGCC CTGGACGCCG CCTGGCGAGC CGCCACCGCC GCTTGCGACG CCTACGCGTA TCACGAGGAA GCCCGCATGC TGGAGCGGAT CCTGCGACTG TGGGACGCGG TTCCCGATGC CGCCGAACGG CTCGGGCTCG ATCGTGTCGC GGTGGGCACC TTCGCCGCCG AATGCTGCAT GCTCAGCGGC GAGTACGCGC GCGGCGTCGA CTTCGCCACC GAGGCGTTGG CCATTGTCGA TGAGGATCGG GAACCGGGCC GCGCTGCGGT ACTGCTGGAA CACCGGGGCC GGTTGCGGGA TCGCACCGAC GCCACCGGGA TCGATGATCT GAGGCGAGCT CACGAGCTGC TGGCGTCCGA GCCGGACGAC AACGCTCGTG GTCGGCTGCT GGGCCTCATG GCCATGGCGA CGTATCGCGG GGACGCCGAC ACCGCGTTGG AACTGGCTCG GGACGCGCTG CGCATCGGAC GCGAAACCGG CGACCCCACC GTGACCGTGC GCGGCCTGCT GGTCGTCGGC GGGGTGACCT CCAACCTGGA CATGCTGACC GAGGCACTGT CCATAACCGA GGAGCTGCGC GACCACGATC TTGAGATCAC CGTCCTGATG TACCTGGCCA TGCATCATGC GCGGCAAGGC GACCATGGCG AATCGGCTCG GGCCGCCCGC GGGGGCGTGG ACCGGGCGCA GCGACTCGGC CTGGCCCGCA GCCGGGGCAC CCACCTGGCC GGGCATCTCG CCAAGGCGCT GCTGCTGTCG GGGCACTGGG ACGAAGCCGC GTCCGTTGTG GACTCGGCCT TGGCGGAGGG GCCGCCGCCG ATGTCGCGCG ACATCCTGCG GGCCGTCGCC GGTCACCTGG CGGTTCTGCG CGGCGACACC GACACCGCCG CCGAACTGGC CGTGGACCTG GAGAGCGGCG ACGAACGGCT GGGCACGCAT CTCCTGCACC GGCACGTGTT CCTGTGCCTG GCGGCACTGT CCGAAGGTGA CATTGATCGG GCGGAGGAGT TCCTGTCTCG GGCCCTGTCG AACCCGGCGC TGCGACGGGT CGCGCCGGTC GAGGTGCGTC CCGTCCTGGC TGTCGGAGCC CGGATCCGGC ACGCGCGCCT CGCGGCGGGG GAACAGCCCC GGCACGACGT CGCCGAACTC AACGCCGAGT TGCCCGTCCA CGGTCGGCTC GACAAGGCAT GGCACGACAC CATCGCCGCG ATGACCACGG GTGGTACCGC GCAGGCCTGG GCGGACGTGG TCGCGGCCTG GCGCGCCCTG GACCAGCCCT ACGAACTCGC GCTGAGCCTT CACATCGCGT CCCAGGTGAC GGGGAATCGC GCGCAGGCCA GGGAATCGGC GGAGCTCATC ACGGCGCTGG GCGCGGCACC GTTGGTGACC GGTGACGGTG ACACGTCGGG ACTGACCGAG CGGGAACACG AGGTTTTGGC GCTGATCGTC GAGGGACTGA GTAACCGGCA GATCGCCGCG AAGCTGTACA TCTCGCCGAG CACCGCCGGG GTCCACGTCT CGCACATCCT CGCGAAACTC GGCGCCGCCA CGCGCACCGA AGCGGCCACC ATCGCGCACA AACGCGGCCT GGTAGAGACG TAA
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Protein sequence | MVANRVVSPA FIGRADALSS LLAAFRSAGA APGVALIAGE AGIGKSRLVS EFAASLGGGA RVVTGGCTQL DDGLAYAPFV AVLRALVREL GAERVAEILP GPGRELARWF PELGAAQSGD KLRLYEEILT LVEAAASKPL VVVIEDLHWA DAATAELLGF LARNVNRPGI LLVATYRDTE PATGPLLSEL RRGGRTTQLR LGPLTRHEVG RQLAAILGDR PEPDVARRIH ERSDGNPLFV EALAQSGQST PDAELLLHVP RTLPDALRRV LRAASVATGE VAHALLATVS GNDEDALDDL VRPLVEGGLL LPTEDGYVFR HDLIRHAVYE DLLPGERKRF HARYAEALRD NGTPSQLATH TYAAGQLGPA LDAAWRAATA ACDAYAYHEE ARMLERILRL WDAVPDAAER LGLDRVAVGT FAAECCMLSG EYARGVDFAT EALAIVDEDR EPGRAAVLLE HRGRLRDRTD ATGIDDLRRA HELLASEPDD NARGRLLGLM AMATYRGDAD TALELARDAL RIGRETGDPT VTVRGLLVVG GVTSNLDMLT EALSITEELR DHDLEITVLM YLAMHHARQG DHGESARAAR GGVDRAQRLG LARSRGTHLA GHLAKALLLS GHWDEAASVV DSALAEGPPP MSRDILRAVA GHLAVLRGDT DTAAELAVDL ESGDERLGTH LLHRHVFLCL AALSEGDIDR AEEFLSRALS NPALRRVAPV EVRPVLAVGA RIRHARLAAG EQPRHDVAEL NAELPVHGRL DKAWHDTIAA MTTGGTAQAW ADVVAAWRAL DQPYELALSL HIASQVTGNR AQARESAELI TALGAAPLVT GDGDTSGLTE REHEVLALIV EGLSNRQIAA KLYISPSTAG VHVSHILAKL GAATRTEAAT IAHKRGLVET
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