Gene Snas_5349 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_5349 
Symbol 
ID8886558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp5684186 
End bp5686888 
Gene Length2703 bp 
Protein Length900 aa 
Translation table11 
GC content70% 
IMG OID 
Producttranscriptional regulator, LuxR family 
Protein accessionYP_003514076 
Protein GI291302798 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0835513 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0775284 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGGCGA ATCGCGTGGT CAGTCCGGCG TTCATCGGAC GTGCCGACGC CCTGTCGTCG 
CTGTTGGCCG CGTTTCGTTC CGCCGGTGCG GCTCCGGGGG TCGCGCTGAT CGCCGGGGAG
GCCGGGATCG GGAAGTCCCG GTTGGTGAGC GAGTTCGCCG CTTCGCTGGG TGGCGGGGCC
CGGGTGGTGA CCGGCGGTTG TACCCAGTTG GACGACGGCT TGGCCTACGC GCCGTTCGTC
GCCGTGTTGC GGGCTTTGGT TCGCGAGCTG GGAGCCGAGC GGGTCGCTGA GATCCTGCCG
GGGCCCGGAC GTGAGCTGGC GCGCTGGTTT CCGGAGCTCG GGGCCGCGCA GTCGGGGGAC
AAACTGCGGT TGTACGAGGA GATTCTGACG CTGGTCGAGG CCGCCGCGTC GAAGCCGCTC
GTGGTGGTCA TCGAGGATCT GCACTGGGCC GATGCCGCCA CCGCCGAGCT GCTGGGGTTT
CTGGCGCGGA ATGTGAACCG GCCCGGGATC CTGTTGGTGG CAACGTATCG GGACACCGAG
CCCGCGACCG GGCCGCTGCT GTCCGAGTTG CGGCGTGGTG GCCGGACCAC TCAGTTGCGA
CTCGGGCCGC TGACCCGTCA CGAGGTCGGA CGTCAGTTGG CGGCGATCCT CGGCGACCGT
CCCGAACCTG ATGTCGCCCG GCGGATCCAC GAACGCAGCG ACGGTAATCC GTTGTTCGTG
GAGGCCTTGG CCCAAAGTGG TCAGAGCACT CCGGACGCCG AGTTGCTGCT GCATGTTCCG
AGGACGCTGC CGGATGCGCT GCGGCGGGTG CTGCGGGCGG CCTCGGTGGC CACGGGTGAG
GTAGCGCATG CCTTGCTGGC CACGGTTTCG GGCAACGACG AGGACGCGCT GGACGATTTG
GTCCGACCGC TCGTCGAGGG CGGCCTGTTG CTGCCCACAG AGGATGGTTA CGTCTTCCGG
CACGATCTGA TCCGGCACGC CGTGTACGAG GACCTGCTGC CCGGTGAACG CAAACGGTTC
CACGCACGCT ACGCCGAGGC GTTGCGCGAC AACGGGACCC CGTCTCAGTT GGCCACGCAC
ACCTACGCGG CCGGGCAGCT CGGCCCGGCC CTGGACGCCG CCTGGCGAGC CGCCACCGCC
GCTTGCGACG CCTACGCGTA TCACGAGGAA GCCCGCATGC TGGAGCGGAT CCTGCGACTG
TGGGACGCGG TTCCCGATGC CGCCGAACGG CTCGGGCTCG ATCGTGTCGC GGTGGGCACC
TTCGCCGCCG AATGCTGCAT GCTCAGCGGC GAGTACGCGC GCGGCGTCGA CTTCGCCACC
GAGGCGTTGG CCATTGTCGA TGAGGATCGG GAACCGGGCC GCGCTGCGGT ACTGCTGGAA
CACCGGGGCC GGTTGCGGGA TCGCACCGAC GCCACCGGGA TCGATGATCT GAGGCGAGCT
CACGAGCTGC TGGCGTCCGA GCCGGACGAC AACGCTCGTG GTCGGCTGCT GGGCCTCATG
GCCATGGCGA CGTATCGCGG GGACGCCGAC ACCGCGTTGG AACTGGCTCG GGACGCGCTG
CGCATCGGAC GCGAAACCGG CGACCCCACC GTGACCGTGC GCGGCCTGCT GGTCGTCGGC
GGGGTGACCT CCAACCTGGA CATGCTGACC GAGGCACTGT CCATAACCGA GGAGCTGCGC
GACCACGATC TTGAGATCAC CGTCCTGATG TACCTGGCCA TGCATCATGC GCGGCAAGGC
GACCATGGCG AATCGGCTCG GGCCGCCCGC GGGGGCGTGG ACCGGGCGCA GCGACTCGGC
CTGGCCCGCA GCCGGGGCAC CCACCTGGCC GGGCATCTCG CCAAGGCGCT GCTGCTGTCG
GGGCACTGGG ACGAAGCCGC GTCCGTTGTG GACTCGGCCT TGGCGGAGGG GCCGCCGCCG
ATGTCGCGCG ACATCCTGCG GGCCGTCGCC GGTCACCTGG CGGTTCTGCG CGGCGACACC
GACACCGCCG CCGAACTGGC CGTGGACCTG GAGAGCGGCG ACGAACGGCT GGGCACGCAT
CTCCTGCACC GGCACGTGTT CCTGTGCCTG GCGGCACTGT CCGAAGGTGA CATTGATCGG
GCGGAGGAGT TCCTGTCTCG GGCCCTGTCG AACCCGGCGC TGCGACGGGT CGCGCCGGTC
GAGGTGCGTC CCGTCCTGGC TGTCGGAGCC CGGATCCGGC ACGCGCGCCT CGCGGCGGGG
GAACAGCCCC GGCACGACGT CGCCGAACTC AACGCCGAGT TGCCCGTCCA CGGTCGGCTC
GACAAGGCAT GGCACGACAC CATCGCCGCG ATGACCACGG GTGGTACCGC GCAGGCCTGG
GCGGACGTGG TCGCGGCCTG GCGCGCCCTG GACCAGCCCT ACGAACTCGC GCTGAGCCTT
CACATCGCGT CCCAGGTGAC GGGGAATCGC GCGCAGGCCA GGGAATCGGC GGAGCTCATC
ACGGCGCTGG GCGCGGCACC GTTGGTGACC GGTGACGGTG ACACGTCGGG ACTGACCGAG
CGGGAACACG AGGTTTTGGC GCTGATCGTC GAGGGACTGA GTAACCGGCA GATCGCCGCG
AAGCTGTACA TCTCGCCGAG CACCGCCGGG GTCCACGTCT CGCACATCCT CGCGAAACTC
GGCGCCGCCA CGCGCACCGA AGCGGCCACC ATCGCGCACA AACGCGGCCT GGTAGAGACG
TAA
 
Protein sequence
MVANRVVSPA FIGRADALSS LLAAFRSAGA APGVALIAGE AGIGKSRLVS EFAASLGGGA 
RVVTGGCTQL DDGLAYAPFV AVLRALVREL GAERVAEILP GPGRELARWF PELGAAQSGD
KLRLYEEILT LVEAAASKPL VVVIEDLHWA DAATAELLGF LARNVNRPGI LLVATYRDTE
PATGPLLSEL RRGGRTTQLR LGPLTRHEVG RQLAAILGDR PEPDVARRIH ERSDGNPLFV
EALAQSGQST PDAELLLHVP RTLPDALRRV LRAASVATGE VAHALLATVS GNDEDALDDL
VRPLVEGGLL LPTEDGYVFR HDLIRHAVYE DLLPGERKRF HARYAEALRD NGTPSQLATH
TYAAGQLGPA LDAAWRAATA ACDAYAYHEE ARMLERILRL WDAVPDAAER LGLDRVAVGT
FAAECCMLSG EYARGVDFAT EALAIVDEDR EPGRAAVLLE HRGRLRDRTD ATGIDDLRRA
HELLASEPDD NARGRLLGLM AMATYRGDAD TALELARDAL RIGRETGDPT VTVRGLLVVG
GVTSNLDMLT EALSITEELR DHDLEITVLM YLAMHHARQG DHGESARAAR GGVDRAQRLG
LARSRGTHLA GHLAKALLLS GHWDEAASVV DSALAEGPPP MSRDILRAVA GHLAVLRGDT
DTAAELAVDL ESGDERLGTH LLHRHVFLCL AALSEGDIDR AEEFLSRALS NPALRRVAPV
EVRPVLAVGA RIRHARLAAG EQPRHDVAEL NAELPVHGRL DKAWHDTIAA MTTGGTAQAW
ADVVAAWRAL DQPYELALSL HIASQVTGNR AQARESAELI TALGAAPLVT GDGDTSGLTE
REHEVLALIV EGLSNRQIAA KLYISPSTAG VHVSHILAKL GAATRTEAAT IAHKRGLVET