| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_2956 |
|---|
| Symbol | |
|---|
| ID | 8327145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 3413350 |
|---|
| End bp | 3417369 |
|---|
| Gene Length | 4020 bp |
|---|
| Protein Length | 1339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 80% |
|---|
| IMG OID | 644943482 |
|---|
| Product | transcriptional regulator, putative ATPase, winged helix family |
|---|
| Protein accession | YP_003100723 |
|---|
| Protein GI | 256377063 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3899] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00898983 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCTAGTG GAGCGCCGCT GCGCGTCGCC CTGCTGGGGC CGGTGCGGGC GTGGCTCGGG
GAGACCGAGG TGGACGTCGG GGCCGCCCGG AGGCGGGCGG TGTTCGCCGT GCTGGCGGTG
CGGGCCGGGC AGACCGTGGC CAGGGACGAG CTGGTCGACG GCGTGTGGGG CGACGCTCCC
CCGGCCACGG CGGGCGCCAG CCTCTACACC TACGTGTCCG GGCTGCGCCG CGCGTTCGAC
CCGGACCGCT CGCACCGCGC CGCGACCGGC GTGATCGACT CCGTCGGGGC CGGGTACGCG
CTGCGGCTGG AGCCCGACGG GCTGGACGTG CACCGCTTCG AGGCGCACCG GGAACGCGCG
CAGGAGCTCG CCGCCGCCGA CCCGGCGGGC GCGCTGCGCG AGCTGGACGA GGCGCTCGGG
CTGTGGCGCG GCGACGCGCT GTCCGGGGTG CCGGGGCCGT TCGCCGAGGC GCAGCGGTCG
CGGCTGGCGG AGCTGCGGCT GGCGGCCGTC GAGCGGCGGG CCGAGCTGGC GCTGGGCCTG
GGGCGGCACG CGGACGTGGT CGCCGAGCTG ACGGCGCTGA CCGCCGACCA CCCGATGCGG
GAGGGGCTGC GGGCGCTGCT GATGCAGGCG CTGCACCGGG GTGGGCGGCA GGCCGAGGCG
CTGGAGGTGT TCCGGGACGC CAGGGACGCG CTCGTCGAGC AGCTAGGGAT CGAGCCGGGG
CCAGCGCTGC GGCACGCGCA CAGCCAGGTG CTCGGGGACC ACGGGAGCGC CTCGGACGGG
GCGGCGTGGG CGCGCGGGGC GGACCTGCTG CCACCGCGCG GGAGCTCTTG GCCGGGTGGT
GATGTGTCGG GCGGCGATGT GTCAGGTGGC GGGCGGGCCG GGGGCGGGCC GCCGGGTGGT
GACGCGTGGG AGCGCGGGGG AAGCGGCGGG AACGGGCGGG GCAGGGGCGG GCAGGGCGGG
GGCGGATGGA CCGGCGGCGG GCAGGGCGGG GGTCGGTGGG GCGGCGACGC GCGGACCGGT
GACGGGGAGG CGGGCGCTGA CCGGGCCGGT GGCAGGCGGG CGGGGAGCGG GCAGGCGGGC
GTTGGACGAG CGGGCGCAGG TCAGACAGGC GGCGGACGGG CAGAGGGCGG GCGGGCAGAG
GGCGGGCGGG CAGAGGGCGG GCAGGCAGAG GGCGGGCAGG CGGGAAGCGG CCGAGCGGGC
GCGAGCCAGG CGGGCGGTGG ACGTGGGAGC GCGGGCCGGG CGGGCAGCGG GTTCCCCGGT
GACGGGTCGC CGGGTGCCGG GCGGGCCGGA AGTGGCCGCG GGAGCGCAGA TCAGCAAGGT
GGCGGATTCC GGAACGACGG GTCGCCGGGT GCCGGATCGC CGGGTGCCGG ATCGCCGGGT
GCCGGATCGC CGGGTGCCGG GCTGTCGGGC GTCGCACGAG CGGGCGCGGG TCGGGCGGGC
TCCGGGTTCC TGAGCGGCGG GGCGGGTGAC GGGCTCCCCG GCTGGTCGGG GGTGGACGCC
GCAGCCGCCG GTGAGCACGG CGTTGGGCGG CCCGCCCTGT CCACCCCCAC CGCCGTCCCC
CGCGGCTTCG CCGGGCGGGC GCGGGAGTTG GCCGCGCTGC GGGCCGCCGT CGCCGAGGTG
GTGGCCGGGC GGGGTGGGGC GGTGTGGGTG GAGGGTGAGC CGGGGATCGG CAAGTCGGCC
CTGCTCGACG TCGCCTTGGA CGCCCGCGAC GTGCAGCTCG GCTGGGCGCG CGGGGACGAG
CTGGGCGGTC GCTTCCCGCT GCGGGTGGTG CTGGACTGCC TGGACGTGTC GCCGTGCTCC
GCCGACCCGC GCCGGGTCGC GCTCGCCGCC GCGCTCGACG ACCCCGCCTC CTGGTTCGGC
GACCCGGTGG CCGCCGCCGC CGAGCGGCTC ACCGGGTTCG TCGCCGAGCT GTGCGCGGCC
GGGCCCGTGG TGCTCGTGGT GGACGACGCG CAGTGGGCCG ACGAGGCCAG CGTCGCGGTG
TGGCGGCGGC TGCTGGGGCT CACCGGTGAG CTGCCGCTGC TGCTGGTCGC CGCCGCCCGC
CCGGTGCCCC GGCGCGGCGA CGTCGACCGG GTGCGCCGGG CCGCCGCCGA CCGGGGCGGG
CTGGTGCTGG GGCTCGGGCC GCTGTCCGAG CCCGAGGTCG CCGGGCTGCT CGCCGAGCAG
GTCGGGGCCG CGCCGGGACC GGAGCTGCTG CGGCTGGCCG GGTGCGCGGG CGGCAACCCG
CTCTACGTGC GCGAGCTGGC CGACGCGCTG GTGCGCGAGG GCGCGCTGGA GCGCCGCGGC
GGGGTGGCCG ACGTGGACGA CGTCGGGCGG ACCGCGTCGC CGTCGCTGGT GGCGGCGCTG
GGCAGGCGGT TGTCGTTCCT GTCCGACGAC GCCACCGAGG TGCTGCGCCG GGCCGCGCTG
CTCGGCGACC GGTTCGCCGT GGCCGACGTG GCGACCGCGC TGGGCACTCC CGCGTCCGGG
CTGCTCGGGC CGCTGTCCGA GGCGACCGAG TCGGGGCTGC TGGTGGACGG CGGCGAGCTG
CTGGCGTTCC GGCACCCGCT GGTGCGGCAG GTGCTGTACC TGGGGGTGCC CGAGGCGGTG
CGGTCCGCGC TGCACCGGCA GGCCGCGCGG GCGCTGGCCG AGGCCGGTGC GGCGGTGGCG
GTGGTGGCCG GGCAGATCGC GGCGGCCCCC GAGCTGGCCG ACGACTGGGT CGTGGACTGG
CTGACCGCGC GGGCCGACCC GCTCGCGGCG GCCGAACCCG AGGCGGCGGT GGAGCTGCTG
CGGTCGGTGG CGCGGCAGCC CGCGCTGGAA CCGGCGCACC GGGAGCGGCT GCTGGCCGCC
CTGGCCCGGC TGCTGTTCCT GCTCGGCGAG CGGCCCGACG CGGAGGTCCG GTACGTGCTG
GCCCGCTCCA GGGACGCCGA CCGGATCGGG GAGATGCGCT GGATGCTGGC GCGGTTGCAG
AACGACGACG GCGAGCCCGG TGAGGCGTCC CGGATGCTCG CGGAGGCGAT CGCGGACCCG
GCGAGCACGC CGGTGTGGCG GGCCAGGATG CGGGCGCTGC TGGCGGTGGT GCACCGGGAG
GGGCTGGACG ACGTGGTGGC GGCCGAGGCG CACGCGCTGG CCGTGCCGCC CGGCGACCGG
TTCGCGGACG GGTTGGCGCT GCGCGCGCGG TGGCAGGTGG CGATGGCGCG GCGCGACCAC
GCGGGCGCGC TCGCCCGCGC CGAGGAGGGC GCGGCGCTGG TGGCGGGCGA CCCGGTGCTG
GTCGGGCTGT GGCACGAGCT GGTCGCGGAC CGGGCGGAGG CGCTGCGGGC GCTGGACCGG
TTCGCCGACG CGGACGCCGT GCTGCGCGCC GGTCGGGCCG ACGCGCCGGG GTCGCTGGTG
CACGGCGCGG CGCTGGTGCG GGCGGCCGAG CAGGACTACT GGACGGGGCG GTGGGACCGG
GCGCTGGAGC GGGCCGAGGA CGGGGTGGCG CGGTCCGGGT CGCGCGAACG GGGGCGGGTG
CTGCTGGGGC GGGGGATCGC GGCGCTGGTG CGGGTGCGGC GGGGGCTGCC GGTGCGGTGG
GACGGGGCGC CGCCGCCGGT GCTGCCCGCG CACCACGAGC AGGCGGACTT CCTGGCGGTC
GCGCGGGCGC TGGCCGGGAG CGCGCCGGTC CCCGCGCTGG TGCCGCTGCT GCGCCCGCGC
GGGCTGCTGG CGCGGCACCG CTGGATGCCG CTGCTGACCC GGTCCGCGCT GGTGGAGGGC
GCGCGGGACG TGGCGGAGCG GGCGCTGCGG GTGTGCCTGG ACGAGGGCGC GGAGGTGGCG
GCGGCGCACT GCCGGGGACT GCTGGCCGCT GATCCGTCCG AGGTGTTGGT GGCGGCGGGG
CGTTACCGGG CGGCGGGTCG GACCGTTGAT CTGGCGGGGG CGCTGGAGGA CGCGGCGGTC
CTGCTGGGCG ACGAGGTGCG GCTCGCCGAG GCGGTGGAGG TGTACCGGGG GTTCGGCGCG
GAGGCGGACG CGCGGCGGGC TCGGGCGCGG TTCGGGCGGT TGGCGCGGGG AGCGCGATGA
|
|---|
| Protein sequence | MPSGAPLRVA LLGPVRAWLG ETEVDVGAAR RRAVFAVLAV RAGQTVARDE LVDGVWGDAP
PATAGASLYT YVSGLRRAFD PDRSHRAATG VIDSVGAGYA LRLEPDGLDV HRFEAHRERA
QELAAADPAG ALRELDEALG LWRGDALSGV PGPFAEAQRS RLAELRLAAV ERRAELALGL
GRHADVVAEL TALTADHPMR EGLRALLMQA LHRGGRQAEA LEVFRDARDA LVEQLGIEPG
PALRHAHSQV LGDHGSASDG AAWARGADLL PPRGSSWPGG DVSGGDVSGG GRAGGGPPGG
DAWERGGSGG NGRGRGGQGG GGWTGGGQGG GRWGGDARTG DGEAGADRAG GRRAGSGQAG
VGRAGAGQTG GGRAEGGRAE GGRAEGGQAE GGQAGSGRAG ASQAGGGRGS AGRAGSGFPG
DGSPGAGRAG SGRGSADQQG GGFRNDGSPG AGSPGAGSPG AGSPGAGLSG VARAGAGRAG
SGFLSGGAGD GLPGWSGVDA AAAGEHGVGR PALSTPTAVP RGFAGRAREL AALRAAVAEV
VAGRGGAVWV EGEPGIGKSA LLDVALDARD VQLGWARGDE LGGRFPLRVV LDCLDVSPCS
ADPRRVALAA ALDDPASWFG DPVAAAAERL TGFVAELCAA GPVVLVVDDA QWADEASVAV
WRRLLGLTGE LPLLLVAAAR PVPRRGDVDR VRRAAADRGG LVLGLGPLSE PEVAGLLAEQ
VGAAPGPELL RLAGCAGGNP LYVRELADAL VREGALERRG GVADVDDVGR TASPSLVAAL
GRRLSFLSDD ATEVLRRAAL LGDRFAVADV ATALGTPASG LLGPLSEATE SGLLVDGGEL
LAFRHPLVRQ VLYLGVPEAV RSALHRQAAR ALAEAGAAVA VVAGQIAAAP ELADDWVVDW
LTARADPLAA AEPEAAVELL RSVARQPALE PAHRERLLAA LARLLFLLGE RPDAEVRYVL
ARSRDADRIG EMRWMLARLQ NDDGEPGEAS RMLAEAIADP ASTPVWRARM RALLAVVHRE
GLDDVVAAEA HALAVPPGDR FADGLALRAR WQVAMARRDH AGALARAEEG AALVAGDPVL
VGLWHELVAD RAEALRALDR FADADAVLRA GRADAPGSLV HGAALVRAAE QDYWTGRWDR
ALERAEDGVA RSGSRERGRV LLGRGIAALV RVRRGLPVRW DGAPPPVLPA HHEQADFLAV
ARALAGSAPV PALVPLLRPR GLLARHRWMP LLTRSALVEG ARDVAERALR VCLDEGAEVA
AAHCRGLLAA DPSEVLVAAG RYRAAGRTVD LAGALEDAAV LLGDEVRLAE AVEVYRGFGA
EADARRARAR FGRLARGAR
|
|---|
| |