More than 300 homologs were found in PanDaTox collection
for query gene Amir_0760 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_0760  extracellular solute-binding protein family 5  100 
 
 
566 aa  1107    Actinosynnema mirum DSM 43827  Bacteria  normal  0.010503  n/a   
 
 
-
 
NC_013159  Svir_31150  ABC-type dipeptide transport system, periplasmic component  48.52 
 
 
622 aa  488  1e-136  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2164  extracellular solute-binding protein  36.78 
 
 
599 aa  332  8e-90  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.10806 
 
 
-
 
NC_008146  Mmcs_4039  extracellular solute-binding protein  36.87 
 
 
624 aa  328  2.0000000000000001e-88  Mycobacterium sp. MCS  Bacteria  normal  0.668084  n/a   
 
 
-
 
NC_008705  Mkms_4114  extracellular solute-binding protein  36.87 
 
 
624 aa  328  2.0000000000000001e-88  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_4268  extracellular solute-binding protein  36.87 
 
 
624 aa  328  2.0000000000000001e-88  Mycobacterium sp. JLS  Bacteria  normal  normal  0.475057 
 
 
-
 
NC_009565  TBFG_11191  lipoprotein lpqW  35.68 
 
 
635 aa  313  5.999999999999999e-84  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4539  extracellular solute-binding protein  35.61 
 
 
608 aa  305  2.0000000000000002e-81  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.874043 
 
 
-
 
NC_013441  Gbro_3330  extracellular solute-binding protein family 5  35.56 
 
 
614 aa  287  2.9999999999999996e-76  Gordonia bronchialis DSM 43247  Bacteria  normal  0.424693  n/a   
 
 
-
 
NC_014158  Tpau_1145  extracellular solute-binding protein family 5  32.01 
 
 
622 aa  244  1.9999999999999999e-63  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0845067  n/a   
 
 
-
 
NC_013235  Namu_4315  extracellular solute-binding protein family 5  35.99 
 
 
603 aa  244  3e-63  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0499363  normal 
 
 
-
 
NC_014165  Tbis_2402  extracellular solute-binding protein family 5  30 
 
 
566 aa  148  2.0000000000000003e-34  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.951994 
 
 
-
 
NC_007333  Tfu_0818  peptide/nickel transport system substrate-binding protein  27.49 
 
 
568 aa  142  1.9999999999999998e-32  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5593  extracellular solute-binding protein family 5  26.01 
 
 
567 aa  135  3e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.38037 
 
 
-
 
NC_013595  Sros_7096  ABC-type dipeptide transport system periplasmic component-like protein  27.51 
 
 
578 aa  132  2.0000000000000002e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3275  extracellular solute-binding protein family 5  26.67 
 
 
570 aa  131  3e-29  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0712739  n/a   
 
 
-
 
NC_008254  Meso_1835  extracellular solute-binding protein  24.04 
 
 
563 aa  120  9.999999999999999e-26  Chelativorans sp. BNC1  Bacteria  decreased coverage  0.00561184  n/a   
 
 
-
 
NC_013172  Bfae_08460  ABC-type dipeptide transport system, periplasmic component  26.28 
 
 
579 aa  114  7.000000000000001e-24  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1954  ABC-type dipeptide transport system periplasmic component-like protein  24.77 
 
 
567 aa  111  4.0000000000000004e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.754029 
 
 
-
 
NC_008578  Acel_1116  extracellular solute-binding protein  23.76 
 
 
581 aa  111  4.0000000000000004e-23  Acidothermus cellulolyticus 11B  Bacteria  normal  0.749385  normal  0.0404913 
 
 
-
 
NC_013131  Caci_8314  extracellular solute-binding protein family 5  24.31 
 
 
576 aa  97.8  4e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.5259 
 
 
-
 
NC_009077  Mjls_3946  extracellular solute-binding protein  25.3 
 
 
554 aa  97.8  4e-19  Mycobacterium sp. JLS  Bacteria  normal  0.436412  normal  0.0739925 
 
 
-
 
NC_008146  Mmcs_3931  extracellular solute-binding protein  25.45 
 
 
555 aa  97.4  7e-19  Mycobacterium sp. MCS  Bacteria  normal  0.0539387  n/a   
 
 
-
 
NC_008705  Mkms_4005  extracellular solute-binding protein  25.45 
 
 
555 aa  97.4  7e-19  Mycobacterium sp. KMS  Bacteria  normal  0.326685  normal 
 
 
-
 
NC_009338  Mflv_2258  extracellular solute-binding protein  24.36 
 
 
558 aa  94.4  5e-18  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.152339  normal 
 
 
-
 
NC_009565  TBFG_11306  periplasmic oligopeptide-binding lipoprotein oppA  24.9 
 
 
591 aa  91.3  4e-17  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4433  extracellular solute-binding protein  24.68 
 
 
550 aa  91.3  4e-17  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.766057  normal 
 
 
-
 
NC_013131  Caci_7779  extracellular solute-binding protein family 5  24.22 
 
 
597 aa  91.3  5e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.354248 
 
 
-
 
NC_013721  HMPREF0424_1251  extracellular solute-binding protein  25 
 
 
580 aa  89.4  2e-16  Gardnerella vaginalis 409-05  Bacteria  n/a    hitchhiker  0.00147859 
 
 
-
 
NC_014210  Ndas_0536  extracellular solute-binding protein family 5  24.37 
 
 
565 aa  88.6  3e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_0619  extracellular solute-binding protein family 5  27.02 
 
 
551 aa  85.1  0.000000000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2706  extracellular solute-binding protein  23.4 
 
 
538 aa  85.5  0.000000000000003  Enterobacter sp. 638  Bacteria  normal  0.723031  normal 
 
 
-
 
NC_013174  Jden_0785  extracellular solute-binding protein family 5  22.41 
 
 
600 aa  84.3  0.000000000000005  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2097  4-phytase  24.09 
 
 
546 aa  84  0.000000000000007  Geobacter lovleyi SZ  Bacteria  unclonable  0.00000775897  n/a   
 
 
-
 
NC_008781  Pnap_3537  extracellular solute-binding protein  25.77 
 
 
556 aa  82.4  0.00000000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3248  dipeptide ABC transporter, periplasmic dipeptide-binding protein, putative  25.99 
 
 
540 aa  81.3  0.00000000000004  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.49035  n/a   
 
 
-
 
NC_009523  RoseRS_0093  extracellular solute-binding protein  25.57 
 
 
604 aa  80.9  0.00000000000006  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.503977 
 
 
-
 
NC_008541  Arth_4014  extracellular solute-binding protein  23.39 
 
 
569 aa  80.5  0.00000000000007  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1592  extracellular solute-binding protein  21.71 
 
 
560 aa  79.3  0.0000000000001  Thermotoga sp. RQ2  Bacteria  normal  0.382923  n/a   
 
 
-
 
NC_009972  Haur_3501  extracellular solute-binding protein  24.49 
 
 
639 aa  78.2  0.0000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.0000268642  n/a   
 
 
-
 
NC_012912  Dd1591_3371  extracellular solute-binding protein family 5  22.7 
 
 
536 aa  77.8  0.0000000000005  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3867  extracellular solute-binding protein family 5  22.62 
 
 
536 aa  77.4  0.0000000000007  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0761  extracellular solute-binding protein family 5  25.87 
 
 
604 aa  77.4  0.0000000000007  Actinosynnema mirum DSM 43827  Bacteria  normal  0.952848  n/a   
 
 
-
 
NC_011886  Achl_3805  extracellular solute-binding protein family 5  25 
 
 
590 aa  76.6  0.000000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_014210  Ndas_0631  extracellular solute-binding protein family 5  25.39 
 
 
631 aa  75.1  0.000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  decreased coverage  0.00116155  normal  0.250691 
 
 
-
 
NC_008687  Pden_4285  extracellular solute-binding protein  26.42 
 
 
530 aa  74.7  0.000000000004  Paracoccus denitrificans PD1222  Bacteria  normal  0.261799  normal  0.839381 
 
 
-
 
NC_011831  Cagg_2944  extracellular solute-binding protein family 5  25.45 
 
 
587 aa  74.7  0.000000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.0305195 
 
 
-
 
NC_002939  GSU1433  peptide ABC transporter, periplasmic peptide-binding protein  27.52 
 
 
538 aa  74.3  0.000000000006  Geobacter sulfurreducens PCA  Bacteria  normal  0.948157  n/a   
 
 
-
 
NC_009674  Bcer98_0551  extracellular solute-binding protein  24.68 
 
 
591 aa  74.3  0.000000000006  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4044  extracellular solute-binding protein family 5  22.14 
 
 
536 aa  73.9  0.000000000007  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1878  extracellular solute-binding protein  23.94 
 
 
536 aa  73.9  0.000000000007  Pseudomonas putida F1  Bacteria  normal  normal  0.419127 
 
 
-
 
NC_009767  Rcas_0197  extracellular solute-binding protein  26.56 
 
 
605 aa  73.2  0.00000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.386701  normal 
 
 
-
 
NC_007355  Mbar_A1979  oligopeptide ABC transporter, solute-binding protein  27.24 
 
 
516 aa  73.2  0.00000000001  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_008609  Ppro_2655  extracellular solute-binding protein  25.06 
 
 
539 aa  72  0.00000000002  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.0000125789  n/a   
 
 
-
 
NC_013521  Sked_26210  extracellular solute-binding protein, family 5  23.28 
 
 
606 aa  72  0.00000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.825095  normal  0.282654 
 
 
-
 
NC_012669  Bcav_3400  extracellular solute-binding protein family 5  21.74 
 
 
567 aa  72  0.00000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.110204  normal 
 
 
-
 
NC_008554  Sfum_1411  extracellular solute-binding protein  26.89 
 
 
559 aa  71.6  0.00000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0817  extracellular solute-binding protein  27.32 
 
 
549 aa  71.6  0.00000000003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.22663  normal 
 
 
-
 
NC_013159  Svir_31140  ABC-type dipeptide transport system, periplasmic component  21.62 
 
 
586 aa  72  0.00000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1764  extracellular solute-binding protein family 5  27.22 
 
 
526 aa  71.2  0.00000000004  Ralstonia pickettii 12D  Bacteria  normal  normal  0.295464 
 
 
-
 
NC_010184  BcerKBAB4_0570  extracellular solute-binding protein  24.95 
 
 
591 aa  71.2  0.00000000005  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2644  extracellular solute-binding protein family 5  25.38 
 
 
533 aa  70.5  0.00000000007  Geobacter bemidjiensis Bem  Bacteria  normal  0.0361873  n/a   
 
 
-
 
NC_013521  Sked_18790  ABC-type dipeptide transport system, periplasmic component  29.43 
 
 
540 aa  70.5  0.00000000008  Sanguibacter keddieii DSM 10542  Bacteria  decreased coverage  0.00232176  normal  0.206883 
 
 
-
 
NC_009012  Cthe_2961  extracellular solute-binding protein  24.79 
 
 
541 aa  70.5  0.00000000008  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2541  extracellular solute-binding protein family 5  22.32 
 
 
592 aa  70.1  0.0000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000236938 
 
 
-
 
NC_008025  Dgeo_0324  extracellular solute-binding protein  23.89 
 
 
586 aa  70.1  0.0000000001  Deinococcus geothermalis DSM 11300  Bacteria  unclonable  0.000000261589  hitchhiker  0.0038707 
 
 
-
 
NC_012917  PC1_1984  extracellular solute-binding protein family 5  26.56 
 
 
556 aa  69.7  0.0000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1234  extracellular solute-binding protein  25.84 
 
 
538 aa  69.7  0.0000000002  Geobacter metallireducens GS-15  Bacteria  normal  0.871598  normal  0.318753 
 
 
-
 
NC_012918  GM21_1590  extracellular solute-binding protein family 5  24.85 
 
 
534 aa  68.9  0.0000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013421  Pecwa_2285  extracellular solute-binding protein family 5  26.56 
 
 
556 aa  69.3  0.0000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.946227  n/a   
 
 
-
 
CP001637  EcDH1_2405  extracellular solute-binding protein family 5  27.34 
 
 
558 aa  68.9  0.0000000003  Escherichia coli DH1  Bacteria  decreased coverage  0.000000900492  n/a   
 
 
-
 
NC_003909  BCE_0724  oligopeptide ABC transporter, oligopeptide-binding protein  24.73 
 
 
593 aa  68.6  0.0000000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0623  oligopeptide ABC transporter oligopeptide-binding protein  24.58 
 
 
593 aa  68.6  0.0000000003  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0566  oligopeptide ABC transporter, oligopeptide-binding protein  24.58 
 
 
593 aa  68.6  0.0000000003  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0713  oligopeptide ABC transporter, oligopeptide-binding protein  24.58 
 
 
593 aa  68.6  0.0000000003  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00303874 
 
 
-
 
NC_007530  GBAA_0656  oligopeptide ABC transporter oligopeptide-binding protein  24.58 
 
 
593 aa  68.6  0.0000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0343  extracellular solute-binding protein family 5  21.88 
 
 
537 aa  68.2  0.0000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0785  oligopeptide ABC transporter, oligopeptide-binding protein  24.73 
 
 
593 aa  67.8  0.0000000005  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01217  oligopeptide transporter subunit  27.09 
 
 
543 aa  67.4  0.0000000006  Escherichia coli BL21(DE3)  Bacteria  normal  0.584763  n/a   
 
 
-
 
NC_009800  EcHS_A1352  oligopeptide ABC transporter, periplasmic oligopeptide-binding protein  27.09 
 
 
543 aa  67.4  0.0000000006  Escherichia coli HS  Bacteria  normal  0.0153639  n/a   
 
 
-
 
NC_012892  B21_01227  hypothetical protein  27.09 
 
 
543 aa  67.4  0.0000000006  Escherichia coli BL21  Bacteria  normal  0.595865  n/a   
 
 
-
 
NC_011883  Ddes_1538  extracellular solute-binding protein family 5  28.92 
 
 
563 aa  67.4  0.0000000006  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  hitchhiker  0.000498479  n/a   
 
 
-
 
NC_007963  Csal_1873  extracellular solute-binding protein  23.65 
 
 
526 aa  67.8  0.0000000006  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.021803  n/a   
 
 
-
 
NC_009801  EcE24377A_1391  oligopeptide ABC transporter, periplasmic oligopeptide-binding protein  27.09 
 
 
543 aa  67.4  0.0000000006  Escherichia coli E24377A  Bacteria  normal  0.768286  n/a   
 
 
-
 
NC_010498  EcSMS35_1897  oligopeptide ABC transporter, periplasmic oligopeptide-binding protein  27.09 
 
 
558 aa  67.4  0.0000000007  Escherichia coli SMS-3-5  Bacteria  normal  0.340522  normal  0.197408 
 
 
-
 
NC_011981  Avi_7030  ABC transporter substrate binding protein (oligopeptide)  22.69 
 
 
537 aa  67.4  0.0000000007  Agrobacterium vitis S4  Bacteria  normal  0.394274  n/a   
 
 
-
 
NC_011353  ECH74115_1729  oligopeptide ABC transporter, periplasmic oligopeptide-binding protein  27.09 
 
 
558 aa  67  0.0000000008  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.654548  normal  0.238122 
 
 
-
 
NC_009972  Haur_2657  extracellular solute-binding protein  25.38 
 
 
617 aa  67  0.0000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.0000297428  n/a   
 
 
-
 
NC_010468  EcolC_2385  extracellular solute-binding protein  27.09 
 
 
558 aa  67  0.0000000008  Escherichia coli ATCC 8739  Bacteria  normal  0.190524  hitchhiker  0.0000021243 
 
 
-
 
NC_011886  Achl_3798  extracellular solute-binding protein family 5  23.16 
 
 
557 aa  67  0.0000000008  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013421  Pecwa_2654  extracellular solute-binding protein family 5  24.5 
 
 
544 aa  66.2  0.000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  0.411058  n/a   
 
 
-
 
NC_007005  Psyr_2542  extracellular solute-binding protein  25.06 
 
 
521 aa  66.6  0.000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0150221  normal 
 
 
-
 
NC_013172  Bfae_01310  ABC-type dipeptide transport system, periplasmic component  25.86 
 
 
564 aa  66.6  0.000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.860675  n/a   
 
 
-
 
NC_011729  PCC7424_0337  extracellular solute-binding protein family 5  22.46 
 
 
581 aa  66.6  0.000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011004  Rpal_2913  extracellular solute-binding protein family 5  28.05 
 
 
533 aa  66.6  0.000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.037834  n/a   
 
 
-
 
NC_007973  Rmet_2146  extracellular solute-binding protein  25.25 
 
 
661 aa  66.6  0.000000001  Cupriavidus metallidurans CH34  Bacteria  normal  0.155446  normal 
 
 
-
 
NC_010658  SbBS512_E1412  oligopeptide ABC transporter, periplasmic oligopeptide-binding protein  26.33 
 
 
543 aa  65.9  0.000000002  Shigella boydii CDC 3083-94  Bacteria  normal  0.706367  n/a   
 
 
-
 
NC_008531  LEUM_1932  ABC-type oligopeptide transport system, periplasmic component  23.9 
 
 
544 aa  65.5  0.000000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1581  periplasmic oligopeptide-binding protein  24.58 
 
 
543 aa  66.2  0.000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.197291  normal 
 
 
-
 
NC_009486  Tpet_1545  extracellular solute-binding protein  21.14 
 
 
557 aa  66.2  0.000000002  Thermotoga petrophila RKU-1  Bacteria  normal  0.2137  n/a   
 
 
-
 
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