| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_2385 |
|---|
| Symbol | |
|---|
| ID | 6067119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 2623814 |
|---|
| End bp | 2625490 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641601788 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001725347 |
|---|
| Protein GI | 170020393 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.190524 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000021243 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGTTA ATACCAGTAA TTATAATGAG GGAGTCCAAA AAACAATGAC CAACATCACC
AAGAGAAGTT TAGTAGCAGC TGGCGTTCTG GCTGCGCTAA TGGCAGGGAA TGTCGCGCTG
GCAGCTGATG TACCCGCAGG CGTCACACTG GCGGAAAAAC AAACACTGGT ACGTAACAAT
GGTTCAGAAG TTCAGTCATT AGATCCGCAC AAAATTGAAG GTGTTCCGGA GTCTAATATC
AGCCGAGACC TGTTTGAAGG CTTACTGGTC AGCGATCTTG ACGGTCATCC AGCACCTGGC
GTCGCTGAAT CCTGGGATAA TAAAGACGCG AAAGTCTGGA CCTTCCATTT GCGTAAAGAT
GCGAAATGGT CTGATGGCAC GCCAGTCACA GCACAAGACT TTGTGTATAG CTGGCAACGT
TCTGTTGATC CGAACACTGC TTCTCCGTAT GCCAGTTATC TGCAATATGG GCATATCGCC
GGTATTGATG AAATTCTTGA AGGGAAAAAA CCGATTACCG ATCTCGGCGT GAAAGCTATT
GATGATCACA CATTAGAAGT CACCTTAAGT GAACCCGTTC CGTACTTCTA TAAATTACTT
GTTCACCCAT CAACTTCACC GGTGCCAAAA GCCGCTATCG AGAAATTCGG CGAAAAATGG
ACCCAGCCTG GTAATATCGT CACCAACGGT GCCTATACCT TAAAAGATTG GGTCGTAAAC
GAACGAATCG TTCTTGAACG CAGCCCGACC TACTGGAACA ACGCGAAAAC CGTTATTAAC
CAGGTAACCT ATTTGCCTAT TGCTTCTGAA GTTACCGATG TCAACCGCTA CCGTAGTGGT
GAAATCGACA TGACTTATAA CAACATGCCG ATCGAATTGT TCCAGAAGCT GAAAAAAGAG
ATCCCGGACG AAGTTCACGT TGATCCATAC CTGTGCACTT ACTATTACGA AATTAACAAC
CAGAAACCGC CATTCAACGA TGTGCGTGTG CGTACCGCAC TGAAACTAGG TATGGACCGC
GATATCATTG TTAATAAAGT GAAAGCGCAG GGCGACATGC CCGCCTATGG TTACACTCCA
CCGTATACTG ATGGCGCAAA ATTGACTCAG CCGGAATGGT TTGGCTGGAG CCAGGAAAAA
CGTAACGAAG AAGCGAAAAA ACTGCTGGCT GAAGCGGGTT ATACCGCAGA CAAACCGTTG
ACCATCAACC TGTTGTATAA CACCTCCGAT CTGCATAAAA AGCTGGCGAT TGCTGCCTCT
TCATTGTGGA AGAAAAACAT TGGTGTAAAC GTCAAACTGG TTAACCAGGA GTGGAAAACG
TTCCTCGACA CCCGTCACCA GGGTACTTTT GATGTGGCCC GTGCAGGCTG GTGTGCTGAC
TACAACGAAC CAACTTCCTT CCTGAACACC ATGCTTTCGA ACAGCTCGAT GAATACCGCG
CATTATAAGA GCCCGGCCTT TGACAGCATT ATGGCGGAAA CGCTGAAAGT GACTGACGAG
GCGCAGCGCA CAGCTCTGTA CACTAAAGCA GAACAACAGC TGGATAAGGA TTCGGCCATT
GTTCCTGTTT ATTACTACGT GAATGCGCGT CTGGTGAAAC CGTGGGTTGG TGGCTATACC
GGCAAAGATC CGCTGGATAA TACCTATACC CGGAATATGT ACATTGTGAA GCACTAA
|
|---|
| Protein sequence | MLVNTSNYNE GVQKTMTNIT KRSLVAAGVL AALMAGNVAL AADVPAGVTL AEKQTLVRNN
GSEVQSLDPH KIEGVPESNI SRDLFEGLLV SDLDGHPAPG VAESWDNKDA KVWTFHLRKD
AKWSDGTPVT AQDFVYSWQR SVDPNTASPY ASYLQYGHIA GIDEILEGKK PITDLGVKAI
DDHTLEVTLS EPVPYFYKLL VHPSTSPVPK AAIEKFGEKW TQPGNIVTNG AYTLKDWVVN
ERIVLERSPT YWNNAKTVIN QVTYLPIASE VTDVNRYRSG EIDMTYNNMP IELFQKLKKE
IPDEVHVDPY LCTYYYEINN QKPPFNDVRV RTALKLGMDR DIIVNKVKAQ GDMPAYGYTP
PYTDGAKLTQ PEWFGWSQEK RNEEAKKLLA EAGYTADKPL TINLLYNTSD LHKKLAIAAS
SLWKKNIGVN VKLVNQEWKT FLDTRHQGTF DVARAGWCAD YNEPTSFLNT MLSNSSMNTA
HYKSPAFDSI MAETLKVTDE AQRTALYTKA EQQLDKDSAI VPVYYYVNAR LVKPWVGGYT
GKDPLDNTYT RNMYIVKH
|
|---|
| |