Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1897 |
Symbol | oppA |
ID | 6145903 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 1917666 |
End bp | 1919342 |
Gene Length | 1677 bp |
Protein Length | 558 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641616773 |
Product | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein |
Protein accession | YP_001743951 |
Protein GI | 170681304 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.340522 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.197408 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGGTTA ATACCAGTAA TTATAATGAG GGAGTCCAAA AAACAATGAC CAACATCACC AAGAGAAGTT TAGTAGCAGC TGGCGTTTTG GCTGCGCTTA TGGCAGGGAA TGTCGCGCTG GCAGCTGATG TACCCGCAGG TGTCACACTG GCGGAAAAAC AAACGCTGGT ACGTAACAAT GGTTCAGAAG TTCAGTCATT AGATCCGCAC AAAATTGAAG GTGTTCCGGA GTCTAATATC AGCCGAGACC TGTTTGAAGG CTTACTGGTT AGCGATCTTG ACGGCCATCC GGCACCTGGC GTCGCTGAAT CCTGGGATAA TAAAGACGCG AAAGTCTGGA CCTTCCATTT GCGTAAAGAT GCGAAATGGT CTGATGGCAC GCCAGTCACA GCACAAGACT TTGTGTATAG CTGGCAACGT TCTGTTGATC CAAACACTGC TTCTCCGTAT GCCAGTTATC TGCAATATGG GCATATCGCC GGTATTGATG AAATTCTTGA AGGGAAAAAA CCGATTACCG ATCTCGGCGT GAAAGCTATT GATGATCACA CATTAGAAGT CACCTTAAGT GAACCTGTTC CGTACTTCTA TAAATTACTT GTTCACCCAT CAACTTCACC GGTGCCAAAA GCCGCTATCG AGAAATTCGG CGAAAAATGG ACCCAGCCTG GTAATATCGT CACCAACGGT GCCTATACCT TAAAAGATTG GGTCGTAAAC GAACGAATCG TTCTTGAACG CAGCCCGACC TACTGGAACA ACGCGAAAAC CGTTATTAAC CAAGTAACCT ATTTGCCTAT TGCTTCTGAA GTTACCGATG TCAACCGCTA CCGTAGTGGT GAAATCGACA TGACTTATAA CAACATGCCG ATCGAATTGT TCCAGAAGCT GAAAAAAGAG ATCCCGGACG AAGTTCACGT TGATCCATAC CTGTGCACTT ACTATTACGA AATTAACAAC CAGAAACCGC CATTTAATGA CGTGCGTGTG CGTACCGCAC TGAAATTGGG TATGGACCGC GATATCATTG TTAATAAAGT GAAAGCGCAG GGCGACATGC CCGCCTATGG TTACACTCCA CCATATACTG ATGGCGCAAA ATTGACTCAG CCGGAATGGT TTGGCTGGAG TCAGGAAAAA CGTAACGAAG AAGCGAAAAA ACTGCTGGCT GAAGCGGGTT ATACCGCAGA CAAACCGTTG ACCATCAACC TGTTGTATAA CACCTCCGAT CTGCATAAAA AGCTGGCGAT TGCTGCCTCT TCATTGTGGA AGAAAAACAT TGGTGTAAAC GTCAAACTGG TTAACCAGGA GTGGAAAACG TTCCTCGACA CCCGTCACCA GGGCACTTTT GATGTGGCCC GTGCAGGCTG GTGTGCAGAC TACAACGAAC CAACTTCCTT CCTGAACACC ATGCTGTCGA ACAGCTCGAT GAATACCGCG CATTATAAGA GCCCGGCCTT TGACAGCATT ATGGCGGAAA CGCTGAAAGC GACTGACGAG GCGCAGCGCA CAGCTCTGTA CACTAAAGCA GAACAACAGC TGGATAAGGA TTCGGCCATT GTTCCTGTTT ATTACTACGT GAATGCGCGT CTGGTGAAAC CGTGGGTTGG TGGCTATACC GGCAAAGATC CGCTGGATAA TACCTACACC CGGAATATGT ACATTGTGAA GCACTAA
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Protein sequence | MLVNTSNYNE GVQKTMTNIT KRSLVAAGVL AALMAGNVAL AADVPAGVTL AEKQTLVRNN GSEVQSLDPH KIEGVPESNI SRDLFEGLLV SDLDGHPAPG VAESWDNKDA KVWTFHLRKD AKWSDGTPVT AQDFVYSWQR SVDPNTASPY ASYLQYGHIA GIDEILEGKK PITDLGVKAI DDHTLEVTLS EPVPYFYKLL VHPSTSPVPK AAIEKFGEKW TQPGNIVTNG AYTLKDWVVN ERIVLERSPT YWNNAKTVIN QVTYLPIASE VTDVNRYRSG EIDMTYNNMP IELFQKLKKE IPDEVHVDPY LCTYYYEINN QKPPFNDVRV RTALKLGMDR DIIVNKVKAQ GDMPAYGYTP PYTDGAKLTQ PEWFGWSQEK RNEEAKKLLA EAGYTADKPL TINLLYNTSD LHKKLAIAAS SLWKKNIGVN VKLVNQEWKT FLDTRHQGTF DVARAGWCAD YNEPTSFLNT MLSNSSMNTA HYKSPAFDSI MAETLKATDE AQRTALYTKA EQQLDKDSAI VPVYYYVNAR LVKPWVGGYT GKDPLDNTYT RNMYIVKH
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