| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2146 |
|---|
| Symbol | |
|---|
| ID | 4038961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 2338099 |
|---|
| End bp | 2340084 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637977538 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_584294 |
|---|
| Protein GI | 94311084 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.155446 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTTG GCCACCCGAA CGCATGTAAA ATTGTCGCAC AACTTCGCCC GGCCACAAGC
CGCCGGGCTG TCCTGGGCAT TGTGGAGGTC TGCAACCGGA TGCTGATTCG TGCACGTTGG
CCGCTTCGGG CGGCAGGGCA GTGCTTCTGT CGACGCGCGG TAGTGCAAGG GTGGGCGGCG
CTGTCGATCG TGCTGGCTTC GGGTTTTCCC TTATCTGCTT TCGCAGCCCA CGGCTTTGCG
CTCCACGGCG ACCTCAAGTA TCCGCCGGAC TTCAAGCATT TCGACTACGT CAATGCCGAT
GCCCCGCAGG GGGGCACGCT GACCCTGGCC AACCCGGACC GCCGCACCAG TTTCGACAAG
TTCAACCCGT TCACTCTGAA GGGCACGTCC GCGCCGGGGC TCAACGCCCT GATGTTCGAG
TCGCTGCTGA TCAGCAGCGC CGACGAGACC GCCAGCTCCT ATGGCCTGCT GGCCGACGAT
GTCACGGTGG CGCCGGACGA GTTGTCGGTG ACGTTCCAAA TTCGCCGCGA GGCACGCTTT
GTCAACGGCG ACCCCGTGCT GGCGTCGGAC GTCAAGTATT CGTACGACAT GCTGATGAGC
AAGTTCGCGA GCCCGGGCTA TCGCAGCATG TGCACCGATG TGAAAGCCGT GGTGGTGACC
GGCGAACGCA CGGTGCGATT TGACTTCAAG CAACGCAATC CCGAACTGCC GCTGATTGTC
GGCTCGCTCC CGGTGTTCTC GAAGAAGTGG ACCGAGAAGG TATCGTTCGA CAAGCTGACC
TTCGAGGAGC CGATCACCAG CGGACCGTAC AAGATCGAAC GCTACGACGC CGGGCGTGGC
ATCGTGTTCG CGCGCGACCC GAAATACTGG GGCAAGGATC TGGCGGTACG CCGCGGCACG
TTCAATTTCG GCCGGGTGGT CTACCGTCTC TACAAGGACG AAACGGCCAA ACTCGAGGCA
TTCAAGGCCG GCGAGTTCGA TGCGATCGTC GAATATCGGT CAAAAAACTG GGCCAAGAGC
TACGTCGGCA CGCGTTTCAA GGAAGGGGAG CTGATCAAGA CCGAGTTCCC GCACCGCAAT
GGCGCCGGGA TGCAGGGCTT CGTGATGAAC ATGCGCAAGC CGATGTTCCA GGATGTGCGG
GTGCGCCAGG CGCTGATCCT CGCGCTAGAT TTCGAGTGGC TGAACCGGCA ACTGTTCTAC
GGGGCCTACA AGCGGCTTGA CAGCTGGTTC TCGAACAGCG AACTGGCCGC CAGCACCACC
TTCGATGGCA AGCCGGGGCC GGGTGAACTG GCGTTGCTGG AGCCGCTGCG CGCCGAGTTG
CCGGCCGGAG TGTTCGGCGC GGATGTCGTG CAGCCCACGA CGAACCCGCC GCGCTCCCTG
CGCGACAACC TGCGCGATGC GCGCCGGTTG CTGGCGCAGG CGGGGTGGAC CTATTCAGAT
GGTGCGCTGC GCAATGCCAA GGGCGAGCCG ATGGTGTTCG AATTCCTGGA TGACGGCGGC
GCCATGAGTC GGGTTATCAC GGCGTACATC CGTAACCTGG AGAAGCTCGG CATCGAGGTG
AACCAGCGCA CCACGGACTT CGCGCTGTAC CAGAAGCGGC TCGAGGATTT CGATTTCGAC
ATGGTGTCGA TCCGTTTCCC GGATTCCCAG AGCCCCGGCA ACGAACTGCG CGACCGCTTC
ACGGCTGAAG CGGCGGGCAC GCCCGGTTCC GACAACCTGT TCGGCCTGAA ATCGCCGGCG
GTCGACAAGC TTGTCGACAC GTTGCTGCAC GCCCGATCGC GCGATGAACT GATTACCGCC
GGCCGCGCGC TCGACCGTGT GCTGATGCAT GGCTACTACA TCGTGCCAAA CTGGTACAGT
GCGTTCCATC GTGTGGCATA TCGCAAGGAG ATGGCGTACC CGACGCGTCT GCCGTACTTC
TACACGGCGG AAGGCTGGAT CCTCTCCAAC TGGTGGCGCA ATGACCTGGT GCCAAAGACC
CAGTAA
|
|---|
| Protein sequence | MAVGHPNACK IVAQLRPATS RRAVLGIVEV CNRMLIRARW PLRAAGQCFC RRAVVQGWAA
LSIVLASGFP LSAFAAHGFA LHGDLKYPPD FKHFDYVNAD APQGGTLTLA NPDRRTSFDK
FNPFTLKGTS APGLNALMFE SLLISSADET ASSYGLLADD VTVAPDELSV TFQIRREARF
VNGDPVLASD VKYSYDMLMS KFASPGYRSM CTDVKAVVVT GERTVRFDFK QRNPELPLIV
GSLPVFSKKW TEKVSFDKLT FEEPITSGPY KIERYDAGRG IVFARDPKYW GKDLAVRRGT
FNFGRVVYRL YKDETAKLEA FKAGEFDAIV EYRSKNWAKS YVGTRFKEGE LIKTEFPHRN
GAGMQGFVMN MRKPMFQDVR VRQALILALD FEWLNRQLFY GAYKRLDSWF SNSELAASTT
FDGKPGPGEL ALLEPLRAEL PAGVFGADVV QPTTNPPRSL RDNLRDARRL LAQAGWTYSD
GALRNAKGEP MVFEFLDDGG AMSRVITAYI RNLEKLGIEV NQRTTDFALY QKRLEDFDFD
MVSIRFPDSQ SPGNELRDRF TAEAAGTPGS DNLFGLKSPA VDKLVDTLLH ARSRDELITA
GRALDRVLMH GYYIVPNWYS AFHRVAYRKE MAYPTRLPYF YTAEGWILSN WWRNDLVPKT
Q
|
|---|
| |