More than 300 homologs were found in PanDaTox collection
for query gene Rcas_0197 on replicon NC_009767
Organism: Roseiflexus castenholzii DSM 13941



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009523  RoseRS_0093  extracellular solute-binding protein  80.3 
 
 
604 aa  972    Roseiflexus sp. RS-1  Bacteria  normal  normal  0.503977 
 
 
-
 
NC_009767  Rcas_0197  extracellular solute-binding protein  100 
 
 
605 aa  1211    Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.386701  normal 
 
 
-
 
NC_011831  Cagg_2944  extracellular solute-binding protein family 5  48.41 
 
 
587 aa  533  1e-150  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.0305195 
 
 
-
 
NC_009972  Haur_3496  extracellular solute-binding protein  42.33 
 
 
590 aa  464  1e-129  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3501  extracellular solute-binding protein  30.92 
 
 
639 aa  266  1e-69  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.0000268642  n/a   
 
 
-
 
NC_009972  Haur_2657  extracellular solute-binding protein  30.72 
 
 
617 aa  257  4e-67  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.0000297428  n/a   
 
 
-
 
NC_007498  Pcar_1870  dipeptide transport protein  34.2 
 
 
540 aa  204  4e-51  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0872  extracellular solute-binding protein  28.91 
 
 
541 aa  172  2e-41  Rubrobacter xylanophilus DSM 9941  Bacteria  decreased coverage  0.00426332  n/a   
 
 
-
 
NC_011769  DvMF_0788  extracellular solute-binding protein family 5  28.82 
 
 
576 aa  167  8e-40  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.301156 
 
 
-
 
NC_008751  Dvul_1145  extracellular solute-binding protein  28.05 
 
 
565 aa  164  3e-39  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.00838015  normal  0.546746 
 
 
-
 
NC_011146  Gbem_2644  extracellular solute-binding protein family 5  28.97 
 
 
533 aa  162  2e-38  Geobacter bemidjiensis Bem  Bacteria  normal  0.0361873  n/a   
 
 
-
 
NC_011831  Cagg_2361  ABC-type dipeptide transport system periplasmic component-like protein  32.98 
 
 
445 aa  162  2e-38  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.0243915 
 
 
-
 
NC_012918  GM21_1590  extracellular solute-binding protein family 5  28.36 
 
 
534 aa  160  8e-38  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_014212  Mesil_3074  extracellular solute-binding protein family 5  29.7 
 
 
621 aa  157  4e-37  Meiothermus silvanus DSM 9946  Bacteria  unclonable  0.00000149398  normal  0.300897 
 
 
-
 
NC_014212  Mesil_2731  extracellular solute-binding protein family 5  25.91 
 
 
622 aa  155  2e-36  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2097  4-phytase  28.73 
 
 
546 aa  155  2e-36  Geobacter lovleyi SZ  Bacteria  unclonable  0.00000775897  n/a   
 
 
-
 
NC_007517  Gmet_1234  extracellular solute-binding protein  28.51 
 
 
538 aa  155  2.9999999999999998e-36  Geobacter metallireducens GS-15  Bacteria  normal  0.871598  normal  0.318753 
 
 
-
 
NC_008609  Ppro_2655  extracellular solute-binding protein  27.96 
 
 
539 aa  153  8e-36  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.0000125789  n/a   
 
 
-
 
NC_009523  RoseRS_0413  ABC-type dipeptide transport system periplasmic component-like protein  33.96 
 
 
653 aa  153  1e-35  Roseiflexus sp. RS-1  Bacteria  normal  0.457116  normal 
 
 
-
 
NC_009483  Gura_2049  extracellular solute-binding protein  27.11 
 
 
540 aa  152  2e-35  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2277  extracellular solute-binding protein family 5  27.23 
 
 
615 aa  151  4e-35  Meiothermus ruber DSM 1279  Bacteria  hitchhiker  0.00527261  decreased coverage  0.000000000210766 
 
 
-
 
NC_011988  Avi_5299  ABC transporter substrate binding protein (oligopeptide)  28.35 
 
 
556 aa  150  5e-35  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1433  peptide ABC transporter, periplasmic peptide-binding protein  27.63 
 
 
538 aa  149  1.0000000000000001e-34  Geobacter sulfurreducens PCA  Bacteria  normal  0.948157  n/a   
 
 
-
 
NC_009767  Rcas_1058  ABC-type dipeptide transport system periplasmic component-like protein  33.21 
 
 
653 aa  149  1.0000000000000001e-34  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_0337  extracellular solute-binding protein family 5  24.75 
 
 
581 aa  149  2.0000000000000003e-34  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_3058  extracellular solute-binding protein family 5  29.61 
 
 
554 aa  146  1e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000104524 
 
 
-
 
NC_008554  Sfum_1411  extracellular solute-binding protein  28.41 
 
 
559 aa  146  1e-33  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1563  extracellular solute-binding protein  25.67 
 
 
588 aa  142  1.9999999999999998e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  0.176735  normal  0.279007 
 
 
-
 
NC_007796  Mhun_0195  extracellular solute-binding protein  26.67 
 
 
526 aa  142  1.9999999999999998e-32  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011726  PCC8801_2270  extracellular solute-binding protein family 5  23.08 
 
 
580 aa  142  1.9999999999999998e-32  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_2321  extracellular solute-binding protein family 5  23.08 
 
 
580 aa  142  1.9999999999999998e-32  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.815964 
 
 
-
 
NC_009523  RoseRS_0725  extracellular solute-binding protein  30.61 
 
 
556 aa  140  7e-32  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_1273  extracellular solute-binding protein family 5  23.76 
 
 
593 aa  138  3.0000000000000003e-31  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1538  extracellular solute-binding protein family 5  29.07 
 
 
563 aa  136  9e-31  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  hitchhiker  0.000498479  n/a   
 
 
-
 
NC_008025  Dgeo_0324  extracellular solute-binding protein  29.59 
 
 
586 aa  135  1.9999999999999998e-30  Deinococcus geothermalis DSM 11300  Bacteria  unclonable  0.000000261589  hitchhiker  0.0038707 
 
 
-
 
NC_007947  Mfla_1483  extracellular solute-binding protein  27.14 
 
 
551 aa  134  3e-30  Methylobacillus flagellatus KT  Bacteria  normal  0.228319  normal  0.152124 
 
 
-
 
NC_009767  Rcas_0320  extracellular solute-binding protein  31.54 
 
 
556 aa  135  3e-30  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.144423 
 
 
-
 
NC_008262  CPR_2258  solute-binding family 5 protein  26.43 
 
 
579 aa  132  1.0000000000000001e-29  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0567  oligopeptide ABC transporter, oligopeptide-binding protein  25.83 
 
 
592 aa  132  2.0000000000000002e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0551  extracellular solute-binding protein  23.59 
 
 
591 aa  132  2.0000000000000002e-29  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_0563  extracellular solute-binding protein  25.7 
 
 
536 aa  132  2.0000000000000002e-29  Chelativorans sp. BNC1  Bacteria  normal  0.0406443  n/a   
 
 
-
 
NC_008261  CPF_2555  oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein  26.43 
 
 
580 aa  132  2.0000000000000002e-29  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2798  extracellular solute-binding protein family 5  25.46 
 
 
557 aa  130  5.0000000000000004e-29  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_0520  extracellular solute-binding protein family 5  25.89 
 
 
545 aa  130  1.0000000000000001e-28  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_008787  CJJ81176_1569  peptide ABC transporter, periplasmic peptide-binding protein  25.71 
 
 
511 aa  129  2.0000000000000002e-28  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0570  extracellular solute-binding protein  23.7 
 
 
591 aa  127  5e-28  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0724  oligopeptide ABC transporter, oligopeptide-binding protein  23.67 
 
 
593 aa  127  6e-28  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0858  oligopeptide ABC transporter oligopeptide-binding protein  22.83 
 
 
528 aa  125  2e-27  Bacillus anthracis str. Sterne  Bacteria  decreased coverage  0.00000478589  n/a   
 
 
-
 
NC_006274  BCZK0566  oligopeptide ABC transporter, oligopeptide-binding protein  23.47 
 
 
593 aa  125  2e-27  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0908  oligopeptide ABC transporter oligopeptide-binding protein  22.83 
 
 
528 aa  125  2e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.00000813115  n/a   
 
 
-
 
NC_005945  BAS0623  oligopeptide ABC transporter oligopeptide-binding protein  23.47 
 
 
593 aa  124  5e-27  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0656  oligopeptide ABC transporter oligopeptide-binding protein  23.47 
 
 
593 aa  124  5e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0713  oligopeptide ABC transporter, oligopeptide-binding protein  23.47 
 
 
593 aa  124  5e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00303874 
 
 
-
 
NC_013440  Hoch_2203  extracellular solute-binding protein family 5  27.33 
 
 
531 aa  123  8e-27  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0247328 
 
 
-
 
NC_013216  Dtox_0542  extracellular solute-binding protein family 5  24.18 
 
 
537 aa  122  9.999999999999999e-27  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.578152 
 
 
-
 
NC_006274  BCZK0807  oligopeptide ABC transporter, oligopeptide-binding protein  22.61 
 
 
528 aa  122  9.999999999999999e-27  Bacillus cereus E33L  Bacteria  decreased coverage  0.00000107652  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0803  extracellular solute-binding protein  22.83 
 
 
529 aa  123  9.999999999999999e-27  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.0000165149  n/a   
 
 
-
 
NC_011773  BCAH820_0996  oligopeptide ABC transporter, oligopeptide-binding protein  22.61 
 
 
528 aa  122  9.999999999999999e-27  Bacillus cereus AH820  Bacteria  n/a    unclonable  4.41324e-61 
 
 
-
 
NC_009707  JJD26997_1935  peptide ABC transporter, periplasmic peptide-binding protein  24.62 
 
 
511 aa  122  1.9999999999999998e-26  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0785  oligopeptide ABC transporter, oligopeptide-binding protein  22.79 
 
 
593 aa  122  1.9999999999999998e-26  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0585  extracellular solute-binding protein family 5  26.56 
 
 
628 aa  121  3e-26  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.952367  normal  0.0792841 
 
 
-
 
NC_013159  Svir_19910  ABC-type dipeptide transport system, periplasmic component  28.08 
 
 
589 aa  121  3.9999999999999996e-26  Saccharomonospora viridis DSM 43017  Bacteria  hitchhiker  0.000984023  hitchhiker  0.000242655 
 
 
-
 
NC_013131  Caci_5370  extracellular solute-binding protein family 5  27.23 
 
 
629 aa  120  4.9999999999999996e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.358498 
 
 
-
 
NC_005957  BT9727_0822  oligopeptide ABC transporter, oligopeptide-binding protein  22.39 
 
 
528 aa  121  4.9999999999999996e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  0.00000000000176887  n/a   
 
 
-
 
NC_011772  BCG9842_B4386  oligopeptide ABC transporter, oligopeptide-binding protein  22.39 
 
 
529 aa  120  4.9999999999999996e-26  Bacillus cereus G9842  Bacteria  normal  0.775513  hitchhiker  3.14637e-22 
 
 
-
 
NC_011725  BCB4264_A0945  oligopeptide ABC transporter, oligopeptide-binding protein  22.39 
 
 
528 aa  120  6e-26  Bacillus cereus B4264  Bacteria  hitchhiker  0.00751792  n/a   
 
 
-
 
NC_008025  Dgeo_1344  extracellular solute-binding protein  24.8 
 
 
638 aa  120  7e-26  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.439366 
 
 
-
 
NC_007355  Mbar_A2032  ABC transporter, periplasmic binding protein  24.55 
 
 
524 aa  120  9.999999999999999e-26  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.662418  normal  0.30348 
 
 
-
 
NC_003909  BCE_1000  oligopeptide ABC transporter, oligopeptide-binding protein  22.39 
 
 
529 aa  118  1.9999999999999998e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0409  peptide ABC transporter, periplasmic peptide-binding protein  26.17 
 
 
527 aa  118  1.9999999999999998e-25  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0352  peptide ABC transporter, periplasmic peptide-binding protein  26.17 
 
 
527 aa  118  1.9999999999999998e-25  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5662  extracellular solute-binding protein  26.67 
 
 
544 aa  117  7.999999999999999e-25  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.76313 
 
 
-
 
NC_003912  CJE1755  peptide ABC transporter, periplasmic peptide-binding protein  24.62 
 
 
511 aa  117  8.999999999999998e-25  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_0608  extracellular solute-binding protein  27.71 
 
 
566 aa  116  1.0000000000000001e-24  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007355  Mbar_A3566  dipeptide/oligopeptide-binding protein  27.12 
 
 
562 aa  115  2.0000000000000002e-24  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.672958  normal  0.0864129 
 
 
-
 
NC_013946  Mrub_1143  extracellular solute-binding protein family 5  25.55 
 
 
577 aa  115  2.0000000000000002e-24  Meiothermus ruber DSM 1279  Bacteria  decreased coverage  0.0057674  normal  0.283725 
 
 
-
 
NC_008463  PA14_58360  putative binding protein component of ABC transpor  24.95 
 
 
532 aa  115  2.0000000000000002e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3874  ABC transporter substrate binding protein (oligopeptide)  26.71 
 
 
585 aa  114  5e-24  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1982  putative ABC transporter, periplasmic binding protein  28.23 
 
 
524 aa  114  6e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0990283  normal 
 
 
-
 
NC_007355  Mbar_A0930  oligopeptide ABC transporter, solute-binding protein  25.65 
 
 
588 aa  114  6e-24  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.476779  normal 
 
 
-
 
NC_008553  Mthe_0510  extracellular solute-binding protein  25.26 
 
 
510 aa  114  6e-24  Methanosaeta thermophila PT  Archaea  normal  0.0306064  n/a   
 
 
-
 
NC_009485  BBta_2585  putative ABC transporter, substrate binding subunit  25.6 
 
 
520 aa  114  8.000000000000001e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0598963 
 
 
-
 
NC_008254  Meso_3131  extracellular solute-binding protein  27.36 
 
 
508 aa  113  1.0000000000000001e-23  Chelativorans sp. BNC1  Bacteria  normal  0.792469  n/a   
 
 
-
 
NC_012848  Rleg_4682  extracellular solute-binding protein family 5  26.57 
 
 
532 aa  113  1.0000000000000001e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_1386  extracellular solute-binding protein  23.4 
 
 
578 aa  112  2.0000000000000002e-23  Thermosipho melanesiensis BI429  Bacteria  normal  0.37673  n/a   
 
 
-
 
NC_009632  SaurJH1_1009  extracellular solute-binding protein  22.41 
 
 
571 aa  112  2.0000000000000002e-23  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0094  extracellular solute-binding protein  21.9 
 
 
498 aa  112  2.0000000000000002e-23  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0990  extracellular solute-binding protein  22.41 
 
 
571 aa  112  2.0000000000000002e-23  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1356  extracellular solute-binding protein family 5  28.97 
 
 
596 aa  112  2.0000000000000002e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_1270  ABC-type dipeptide transport system, periplasmic component  26.77 
 
 
542 aa  111  3e-23  Dehalococcoides sp. VS  Bacteria  normal  0.593504  n/a   
 
 
-
 
NC_014212  Mesil_1367  extracellular solute-binding protein family 5  25.22 
 
 
577 aa  112  3e-23  Meiothermus silvanus DSM 9946  Bacteria  hitchhiker  0.0090511  hitchhiker  0.000580883 
 
 
-
 
NC_011729  PCC7424_1649  extracellular solute-binding protein family 5  23.87 
 
 
584 aa  112  3e-23  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011368  Rleg2_4796  extracellular solute-binding protein family 5  26.17 
 
 
532 aa  112  3e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.478428  normal 
 
 
-
 
NC_009455  DehaBAV1_1284  extracellular solute-binding protein  27.8 
 
 
543 aa  111  3e-23  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0892  extracellular solute-binding protein  28.26 
 
 
596 aa  111  4.0000000000000004e-23  Methylobacterium sp. 4-46  Bacteria  normal  0.353929  normal 
 
 
-
 
NC_009656  PSPA7_5111  ABC transporter periplasmic binding protein  24.52 
 
 
532 aa  110  8.000000000000001e-23  Pseudomonas aeruginosa PA7  Bacteria  normal  0.914948  n/a   
 
 
-
 
NC_009523  RoseRS_0354  ABC-type dipeptide transport system periplasmic component-like protein  36.87 
 
 
381 aa  110  8.000000000000001e-23  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.180837 
 
 
-
 
NC_003909  BCE_0247  oligopeptide ABC transporter, substrate-binding protein, putative  25.56 
 
 
567 aa  110  9.000000000000001e-23  Bacillus cereus ATCC 10987  Bacteria  normal  0.460021  n/a   
 
 
-
 
NC_009901  Spea_2671  extracellular solute-binding protein  27.4 
 
 
542 aa  110  9.000000000000001e-23  Shewanella pealeana ATCC 700345  Bacteria  normal  0.699901  n/a   
 
 
-
 
NC_009376  Pars_1494  extracellular solute-binding protein  26.97 
 
 
526 aa  110  9.000000000000001e-23  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  normal  0.69615 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>