| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1878 |
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| Symbol | |
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| ID | 5192759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 2150899 |
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| End bp | 2152509 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640586342 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001267210 |
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| Protein GI | 148547108 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.419127 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTTA TCCCCACACT CTGGGCGGGG GTCTTTGCTG CGTCTCTGGC GCTGACCTCG
GTACCTGCTG CTTTAGCGAA AACCCCGGCG GATCAGTTGA TCGTCGGTAT GAGCATGATC
AACCTGCTGT CCCTCGACCC GGCGGCGGCC ACCGGGCTGG ATGTGTCCGA GGTCAATGCC
AACCTCTACG ACATGCTGCT GGTGCAGGAC GTACGTCAGC CGGACCGGCT GCTACCGGCG
CTGGCAGAAA GCTGGCAGGT CAGCGATGAC CGCAAGACCC TCACGTTCAA CCTGCGCCAG
GGCGTAACGT TCCAGTCTGG TAACCCGCTA AGTGCCGAGG ATGTCGCTTG GTCGCTGCAG
CGCGTACTCA AACTTAACCT GGCCTTGGCG TCGACCTGGA AGGCCTACGG GTTTTCTGCG
GGCAATGTAG ACCAGCACAT GCGCGCTGTT GATGACTCAA CCTTCGTCAT CGAGCTACCA
CGGCCGACTG ATCCGTTGCT GGTGCTGAAT ACCCTGGCAA CTTCGCCCAG CGCATTCATC
CTCGACCGCA AGGTGGTGCA GCAGCACCAG AAGGGCGATG ACATGGGCAG TGCCTGGCTG
GCCACTCACG CGGCTGGTAG CGGGCCGTTC GTGCTCAAGG AGTGGCGCGC CAACGATGTC
ATCCTGATGA ACCGTTTTGA CGGGTACTGG GGTGGCCCAG CCAAGCTCAA GCGCATCGTC
ATGCGCAACA TGACCGAGTC GCAGTCACTG CGGTTGATGG TGGAGCGGGG CGACCTGGAC
CTGGCCAAGG GCATGTCCGC GCCAGACATC GAGGCGCTGG AGAAGTCTGA CAACGTTCGT
ACCCAGACCG TGCAGCGCGG AACGTTGTAC TACGTTGCCC TGAGCGTGAA GAACAAACCC
TACGACGATG TGCGCGTACG CCGGGCGGTT CGTTCGCTGA TCGACTATCA AGGCATCAAC
CAGACCGTGA TGCCGCACTA TGGCCAGCTC AATCAGCGCC CGCTACCGCT TGGCCTGCCA
GCAAGGCTGG ATGATCCGGG CTATGCCCTG AACGTGGCCG AAGCGAAAAA ACTGCTGGCC
GAAGCGGGCT ACCCCGAGGG CTTCAAGACC ACCATCCGCG TGCTCACCGA GCCACCTTTC
ATCAACATTG CGTCCAGCCT GCAGTCGACC TTGGCCCAGG CCGGTATCAA GGCCACCATC
GTCACCGGTA CCGGCAACCA GATCTACGGT GCCATGCGTG AGCGCAGCTT CGACATCCTG
GTCGGGCGCG GCGGCGGTGG TGCTGAACGG CATCCGCATT CAAGCCTGCG CACCCTGGTG
TACAACCCGG ACAACCGCGA CGAAGCCAAG CTGAGCAACT TCCAGGGCTG GCGTACCTCG
TTCTACAGCC CCGAGCTGAA CAACCTGATC GAGCAGGCGG AAGTCGAACC CGACAAGGCG
CAGCAACTGG CCCAGTACCA GCAAATCCAG AAAACCCTGG ACGAGCAGGT GGGGGCCATC
CTGCCTGTGT CGCAGATGAC CGACACCGTG GTGCTCTACC ACGATGTGCA GGACTACCAA
GGCCATACCG CGGCCACCAC CCGTTACAAA GACGTCTACA AGTCGCGCTG A
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| Protein sequence | MSVIPTLWAG VFAASLALTS VPAALAKTPA DQLIVGMSMI NLLSLDPAAA TGLDVSEVNA
NLYDMLLVQD VRQPDRLLPA LAESWQVSDD RKTLTFNLRQ GVTFQSGNPL SAEDVAWSLQ
RVLKLNLALA STWKAYGFSA GNVDQHMRAV DDSTFVIELP RPTDPLLVLN TLATSPSAFI
LDRKVVQQHQ KGDDMGSAWL ATHAAGSGPF VLKEWRANDV ILMNRFDGYW GGPAKLKRIV
MRNMTESQSL RLMVERGDLD LAKGMSAPDI EALEKSDNVR TQTVQRGTLY YVALSVKNKP
YDDVRVRRAV RSLIDYQGIN QTVMPHYGQL NQRPLPLGLP ARLDDPGYAL NVAEAKKLLA
EAGYPEGFKT TIRVLTEPPF INIASSLQST LAQAGIKATI VTGTGNQIYG AMRERSFDIL
VGRGGGGAER HPHSSLRTLV YNPDNRDEAK LSNFQGWRTS FYSPELNNLI EQAEVEPDKA
QQLAQYQQIQ KTLDEQVGAI LPVSQMTDTV VLYHDVQDYQ GHTAATTRYK DVYKSR
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