More than 300 homologs were found in PanDaTox collection
for query gene Rru_A2554 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A2554  methyl-accepting chemotaxis sensory transducer  100 
 
 
644 aa  1271    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0186678  n/a   
 
 
-
 
NC_007958  RPD_0995  chemotaxis sensory transducer  39.02 
 
 
656 aa  395  1e-108  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.880627  normal 
 
 
-
 
NC_007958  RPD_0994  chemotaxis sensory transducer  38.93 
 
 
656 aa  387  1e-106  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.357708  normal 
 
 
-
 
NC_009485  BBta_1388  methyl-accepting chemotaxis sensory transducer  41.12 
 
 
656 aa  379  1e-104  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0527529  normal  0.207734 
 
 
-
 
NC_011004  Rpal_5172  methyl-accepting chemotaxis sensory transducer  38.62 
 
 
656 aa  373  1e-102  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3804  methyl-accepting chemotaxis sensory transducer  39.17 
 
 
655 aa  363  5.0000000000000005e-99  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.772812  normal 
 
 
-
 
NC_009485  BBta_2843  putative histidine kinase, HAMP region  52.38 
 
 
682 aa  330  4e-89  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_2457  methyl-accepting chemotaxis sensory transducer  39.16 
 
 
665 aa  327  4.0000000000000003e-88  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0375918  normal  0.509707 
 
 
-
 
NC_009485  BBta_4464  methyl-accepting chemotaxis sensory transducer  48.15 
 
 
573 aa  299  9e-80  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.610641  normal  0.757777 
 
 
-
 
NC_009485  BBta_0969  methyl-accepting chemotaxis sensory transducer  47.59 
 
 
562 aa  296  7e-79  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.956339  normal  0.570918 
 
 
-
 
NC_011004  Rpal_2054  methyl-accepting chemotaxis sensory transducer  36.16 
 
 
665 aa  291  3e-77  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2025  methyl-accepting chemotaxis sensory transducer  34.26 
 
 
688 aa  287  2.9999999999999996e-76  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0110809  n/a   
 
 
-
 
NC_007958  RPD_0065  chemotaxis sensory transducer  35.78 
 
 
688 aa  287  4e-76  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0714339 
 
 
-
 
NC_010172  Mext_0820  chemotaxis sensory transducer  49.86 
 
 
608 aa  284  4.0000000000000003e-75  Methylobacterium extorquens PA1  Bacteria  normal  0.254614  normal  0.216431 
 
 
-
 
NC_009485  BBta_6483  methyl-accepting chemotaxis protein  43.06 
 
 
565 aa  283  6.000000000000001e-75  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.877741  normal 
 
 
-
 
NC_007643  Rru_A1293  methyl-accepting chemotaxis sensory transducer  46.22 
 
 
562 aa  283  1e-74  Rhodospirillum rubrum ATCC 11170  Bacteria  decreased coverage  0.00511002  n/a   
 
 
-
 
NC_007643  Rru_A3563  chemotaxis sensory transducer  46.24 
 
 
563 aa  280  8e-74  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3380  methyl-accepting chemotaxis sensory transducer  45.17 
 
 
567 aa  280  8e-74  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.689596 
 
 
-
 
NC_007406  Nwi_2996  methyl-accepting chemotaxis protein  44.39 
 
 
698 aa  278  2e-73  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1918  chemotaxis sensory transducer  45.7 
 
 
688 aa  277  5e-73  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.537222 
 
 
-
 
NC_010725  Mpop_0741  methyl-accepting chemotaxis sensory transducer  48.94 
 
 
558 aa  277  6e-73  Methylobacterium populi BJ001  Bacteria  normal  0.532986  normal 
 
 
-
 
NC_011757  Mchl_0779  methyl-accepting chemotaxis sensory transducer with Cache sensor  50.42 
 
 
558 aa  276  6e-73  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0546434  normal  0.151916 
 
 
-
 
NC_007964  Nham_1080  methyl-accepting chemotaxis sensory transducer  46.55 
 
 
698 aa  275  1.0000000000000001e-72  Nitrobacter hamburgensis X14  Bacteria  normal  0.0139762  n/a   
 
 
-
 
NC_007778  RPB_4280  methyl-accepting chemotaxis sensory transducer  46.15 
 
 
563 aa  275  2.0000000000000002e-72  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0718  chemotaxis sensory transducer  35.83 
 
 
669 aa  273  7e-72  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.845917  n/a   
 
 
-
 
NC_007778  RPB_3545  methyl-accepting chemotaxis sensory transducer  44.62 
 
 
689 aa  273  7e-72  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.457552  normal  0.598514 
 
 
-
 
NC_009485  BBta_5044  methyl-accepting chemotaxis receptor/sensory transducer  33.79 
 
 
662 aa  273  9e-72  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.859604  normal 
 
 
-
 
NC_009485  BBta_2905  putative methyl-accepting chemotaxis protein  46.15 
 
 
542 aa  271  2.9999999999999997e-71  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.234112  normal  0.211145 
 
 
-
 
NC_011004  Rpal_4941  methyl-accepting chemotaxis sensory transducer  46.17 
 
 
563 aa  270  7e-71  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.396774  n/a   
 
 
-
 
NC_007643  Rru_A2078  chemotaxis sensory transducer  47.99 
 
 
561 aa  270  7e-71  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.960991  n/a   
 
 
-
 
NC_007778  RPB_0192  methyl-accepting chemotaxis sensory transducer  45.97 
 
 
688 aa  270  8e-71  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2484  chemotaxis sensory transducer  37.98 
 
 
563 aa  269  8.999999999999999e-71  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.1562  n/a   
 
 
-
 
NC_007643  Rru_A2076  chemotaxis sensory transducer  46.2 
 
 
561 aa  269  1e-70  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.723039  n/a   
 
 
-
 
NC_007778  RPB_2358  methyl-accepting chemotaxis sensory transducer  40.05 
 
 
673 aa  269  1e-70  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.207811 
 
 
-
 
NC_009485  BBta_6635  methyl-accepting chemotaxis protein  44.9 
 
 
565 aa  268  2e-70  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.459746  normal  0.104137 
 
 
-
 
NC_007958  RPD_0153  chemotaxis sensory transducer  44.01 
 
 
602 aa  268  2.9999999999999995e-70  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7508  putative methyl-accepting chemotaxis protein (with a HAMP region)  47.31 
 
 
552 aa  267  2.9999999999999995e-70  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.692825  normal 
 
 
-
 
NC_007958  RPD_3547  chemotaxis sensory transducer  40.75 
 
 
566 aa  268  2.9999999999999995e-70  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3107  chemotaxis sensory transducer  43.9 
 
 
674 aa  267  4e-70  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0664997 
 
 
-
 
NC_011757  Mchl_3471  methyl-accepting chemotaxis sensory transducer  48.67 
 
 
561 aa  266  5.999999999999999e-70  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.130295  normal 
 
 
-
 
NC_010172  Mext_3147  chemotaxis sensory transducer  48.94 
 
 
561 aa  266  8.999999999999999e-70  Methylobacterium extorquens PA1  Bacteria  normal  0.0908078  normal 
 
 
-
 
NC_007643  Rru_A1408  chemotaxis sensory transducer  45.78 
 
 
568 aa  266  1e-69  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.591131  n/a   
 
 
-
 
NC_007925  RPC_2149  methyl-accepting chemotaxis sensory transducer  45.2 
 
 
675 aa  265  1e-69  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0391093 
 
 
-
 
NC_007958  RPD_1025  methyl-accepting chemotaxis sensory transducer  40.85 
 
 
681 aa  265  1e-69  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2646  methyl-accepting chemotaxis sensory transducer  33.99 
 
 
625 aa  265  2e-69  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1830  methyl-accepting chemotaxis sensory transducer  43.19 
 
 
563 aa  265  2e-69  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3598  methyl-accepting chemotaxis sensory transducer  42.33 
 
 
672 aa  264  4.999999999999999e-69  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2250  methyl-accepting chemotaxis sensory transducer  43.67 
 
 
670 aa  263  6.999999999999999e-69  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3904  chemotaxis sensory transducer  42.32 
 
 
566 aa  261  2e-68  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0914  methyl-accepting chemotaxis sensory transducer  40.21 
 
 
689 aa  261  2e-68  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.497103 
 
 
-
 
NC_009485  BBta_5110  hypothetical protein  44.54 
 
 
688 aa  261  2e-68  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.791751 
 
 
-
 
NC_010725  Mpop_3344  methyl-accepting chemotaxis sensory transducer  50.42 
 
 
561 aa  261  4e-68  Methylobacterium populi BJ001  Bacteria  normal  0.828703  normal 
 
 
-
 
NC_011004  Rpal_4118  methyl-accepting chemotaxis sensory transducer  44.12 
 
 
567 aa  260  5.0000000000000005e-68  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2961  methyl-accepting chemotaxis sensory transducer  45.72 
 
 
563 aa  260  6e-68  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1197  chemotaxis sensory transducer  45.92 
 
 
688 aa  259  9e-68  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7375  methyl-accepting chemotaxis sensory transducer  42.59 
 
 
655 aa  259  1e-67  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4147  methyl-accepting chemotaxis sensory transducer  44.54 
 
 
694 aa  258  2e-67  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4406  methyl-accepting chemotaxis sensory transducer  39.72 
 
 
566 aa  259  2e-67  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.341232 
 
 
-
 
NC_007643  Rru_A0158  methyl-accepting chemotaxis sensory transducer  47.15 
 
 
561 aa  258  3e-67  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2368  putative methyl-accepting chemotaxis receptor/sensory transducer precursor  45.07 
 
 
561 aa  257  4e-67  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.280114 
 
 
-
 
NC_009485  BBta_2901  methyl-accepting chemotaxis sensory transducer  46.18 
 
 
674 aa  257  6e-67  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.14772  normal  0.22504 
 
 
-
 
NC_007925  RPC_1843  methyl-accepting chemotaxis sensory transducer  38.24 
 
 
568 aa  256  1.0000000000000001e-66  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.618754 
 
 
-
 
NC_011004  Rpal_5119  methyl-accepting chemotaxis sensory transducer  39.9 
 
 
563 aa  255  2.0000000000000002e-66  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0383  methyl-accepting chemotaxis sensory transducer  46.96 
 
 
559 aa  254  3e-66  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.50218 
 
 
-
 
NC_007925  RPC_1709  methyl-accepting chemotaxis sensory transducer  42.89 
 
 
568 aa  254  4.0000000000000004e-66  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.55655  normal  0.12205 
 
 
-
 
NC_007925  RPC_3379  methyl-accepting chemotaxis sensory transducer  41.26 
 
 
587 aa  254  4.0000000000000004e-66  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.787169  normal 
 
 
-
 
NC_007778  RPB_4561  methyl-accepting chemotaxis sensory transducer  43.54 
 
 
711 aa  253  8.000000000000001e-66  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5120  methyl-accepting chemotaxis sensory transducer  35.69 
 
 
563 aa  253  8.000000000000001e-66  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4269  putative methyl-accepting chemotaxis receptor/sensory transducer protein  42.94 
 
 
691 aa  253  9.000000000000001e-66  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.35374 
 
 
-
 
NC_011004  Rpal_5144  methyl-accepting chemotaxis sensory transducer  35.81 
 
 
686 aa  252  1e-65  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4407  methyl-accepting chemotaxis sensory transducer  40.09 
 
 
566 aa  252  1e-65  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.365939 
 
 
-
 
NC_007958  RPD_2465  chemotaxis sensory transducer  44.2 
 
 
561 aa  252  1e-65  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5909  normal  0.697276 
 
 
-
 
NC_010725  Mpop_4549  methyl-accepting chemotaxis sensory transducer  50.43 
 
 
561 aa  251  3e-65  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4286  methyl-accepting chemotaxis sensory transducer  41.28 
 
 
563 aa  251  3e-65  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4787  methyl-accepting chemotaxis sensory transducer  43.26 
 
 
561 aa  250  5e-65  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.708956  n/a   
 
 
-
 
NC_010172  Mext_1266  chemotaxis sensory transducer  39.85 
 
 
562 aa  250  7e-65  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1427  methyl-accepting chemotaxis sensory transducer  39.46 
 
 
562 aa  249  1e-64  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.309452  normal 
 
 
-
 
NC_007925  RPC_2744  methyl-accepting chemotaxis sensory transducer  41.84 
 
 
572 aa  249  1e-64  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.696609  normal  0.585687 
 
 
-
 
NC_011757  Mchl_2346  methyl-accepting chemotaxis sensory transducer  46.93 
 
 
556 aa  248  2e-64  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.395485 
 
 
-
 
NC_007958  RPD_0497  chemotaxis sensory transducer  37.45 
 
 
577 aa  248  2e-64  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2072  chemotaxis sensory transducer  46.67 
 
 
556 aa  248  3e-64  Methylobacterium extorquens PA1  Bacteria  normal  0.68132  normal  0.341201 
 
 
-
 
NC_007925  RPC_4580  methyl-accepting chemotaxis sensory transducer  41.67 
 
 
563 aa  248  3e-64  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.174371  normal 
 
 
-
 
NC_010172  Mext_0667  chemotaxis sensory transducer  42.96 
 
 
565 aa  247  4e-64  Methylobacterium extorquens PA1  Bacteria  normal  0.510632  normal  0.195802 
 
 
-
 
NC_009485  BBta_0885  putative methyl-accepting chemotaxis protein  40.05 
 
 
691 aa  247  4e-64  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.493714  normal 
 
 
-
 
NC_009485  BBta_0575  methyl-accepting chemotaxis sensory transducer  33.73 
 
 
681 aa  247  4.9999999999999997e-64  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2900  putative methyl-accepting chemotaxis receptor/sensory transducer (chemoreceptor)  44.59 
 
 
675 aa  247  4.9999999999999997e-64  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142675  normal  0.173139 
 
 
-
 
NC_007925  RPC_3161  methyl-accepting chemotaxis sensory transducer  41.25 
 
 
731 aa  247  6e-64  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.072786  normal 
 
 
-
 
NC_011004  Rpal_4783  methyl-accepting chemotaxis sensory transducer  39.66 
 
 
730 aa  246  6.999999999999999e-64  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0679  methyl-accepting chemotaxis sensory transducer  42.96 
 
 
565 aa  246  6.999999999999999e-64  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0248904 
 
 
-
 
NC_010725  Mpop_1216  methyl-accepting chemotaxis sensory transducer  45.6 
 
 
562 aa  246  6.999999999999999e-64  Methylobacterium populi BJ001  Bacteria  normal  0.743011  normal  0.567814 
 
 
-
 
NC_007643  Rru_A0441  chemotaxis sensory transducer  36.92 
 
 
653 aa  246  8e-64  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.636586  n/a   
 
 
-
 
NC_011757  Mchl_3907  methyl-accepting chemotaxis sensory transducer  41.2 
 
 
565 aa  246  9e-64  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2972  methyl-accepting chemotaxis sensory transducer  47.72 
 
 
563 aa  246  9e-64  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0632  chemotaxis sensory transducer  42.66 
 
 
736 aa  246  9.999999999999999e-64  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.180969  n/a   
 
 
-
 
NC_010172  Mext_3424  chemotaxis sensory transducer  45.8 
 
 
558 aa  246  9.999999999999999e-64  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.574813 
 
 
-
 
NC_007925  RPC_1253  methyl-accepting chemotaxis sensory transducer  46.4 
 
 
567 aa  246  9.999999999999999e-64  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.010155 
 
 
-
 
NC_007925  RPC_4527  methyl-accepting chemotaxis sensory transducer  44.63 
 
 
667 aa  246  9.999999999999999e-64  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.527831 
 
 
-
 
NC_007778  RPB_2653  methyl-accepting chemotaxis sensory transducer  39.31 
 
 
691 aa  244  1.9999999999999999e-63  Rhodopseudomonas palustris HaA2  Bacteria  decreased coverage  0.00184965  normal  0.0777916 
 
 
-
 
NC_011757  Mchl_3733  methyl-accepting chemotaxis sensory transducer  45.8 
 
 
558 aa  245  1.9999999999999999e-63  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.152196  normal 
 
 
-
 
NC_007958  RPD_0840  chemotaxis sensory transducer  43.08 
 
 
712 aa  245  1.9999999999999999e-63  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.174635 
 
 
-
 
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