Gene Rpal_2054 details

Gene Information

• Locus tag: Rpal_2054
• ID: 6409714
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 2225941
• End bp: 2227938
• Gene Length: 1998 bp
• Protein Length: 665 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 642711940
• Product: methyl-accepting chemotaxis sensory transducer
• Protein accession: YP_001991052
• Protein GI: 192290447
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTCAGT TGTACTCCGC TTCGAAACAT GCCCTGCGAT CTTCCTTCAA CCGCATCAAG 
ATCGGCCTCC GCTTGAAAAT CGCAATGCTG GGTTTGATCG GCGTTGCCCT GGTCGGCTCC 
GCCTGCCTGC TCGGCCTGCG AGAGTCAGCC AATGCCGAGC GCAGATCGGA AGCCAGCGTC 
GCACTGCGCT TCGATGTCGT GCAGCTATCG GCCGACTATC TGCAGGCGGG ATTGATCGCT 
AACGAATTTC TGCGCACGTC GGACGACAAG CTGATCGCAA AGCACGAGGC AGCCGCGACG 
GCAGCCAAGC GCCGGCTGCA GGACATCGAG CTGCGCCTCG GCCAATCGAA AAGCGACGAG 
GCGGCGAAGC AATCGACCGC ACTGCTGACC GGCTTAAATC TGTATCTCAC ACGTTTCCAG 
AACCTGCTGT CAGCCAAACG CGTGATCGGC CTCACCGATC ACGACGGATT GCAGGGCAAA 
CTGCGCGATG CAACCAGGCG GCTCGAAGCG AAGTTGGCCG AGATCGAAGA TCCCCGCCTG 
TCGGTGCTGA TGCTGACGAT GCGGCGCCTG GAGAAGGATT TCATCCTGAA GGGCCGCGAG 
AAGGATGGCG ACGATCTGAT CGAACGCGCC TCCGATTTCG CCGGCGCGCT GGCCAAGAGC 
GATCTTGCCG CCGACCAGAA GAAGGAGCTA ACGGCTCTCA TCGGCGGCTA CAAGTCGAGC 
TTCCTTGCCT TCATGGTCAG CCAACAGAGT CTGAACGAAG AGATTGAAGA CTTCGGTTCG 
GTGTTTGCCC GCAACCGGCC GACGCTGGAC GCGCTGATAA CGAGTGCCGA GGCACGCTAT 
CGGGCCTCTC AGGCAAGCGC GGCTCAGGTC CGAAATCTGC TCAACTGGAT CATCGGCGGC 
GTCACCTTGG GCGTGGCAGC ACTCGCTCTC CTGGTCGGAC AACGCATCGC CGGCTCGGTA 
ACGCGGACCA CCGCAGCAAT GCAGCGGCTC GCCGCTGGGG ATTTCGGGAC GGTACTGCCC 
GGGCTGGAGC GGCGCGACGA GATCGGCGAG ATGGCGCGCG CTGTCGAAGC CTTTAAGGCA 
GCGTCGCAGC GCGCGGCGCG CGAAGAGGCC GAAGCCAAGA TCGCGCAGCA GCAGATCGAG 
GCCGAGCACC GCAGGGCCGA CATGCACAAG CTGGCCGACG GCTTCGAGGT CGCGATCGGC 
AAGGTGATTG AAACGGTGTT TCTGGCGTCG AGCTCGCTTG AGTCGTCGGC GGGCTCGCTG 
ACCCACACCG CCGAGACGTC GCGCCAGCTC ACGATCGCCA CCGCTTCGGT CTCGTCCGAG 
GTGAGCGCCT GTGTCGGCAC GGTTGCGGCG TCGGCCGAGC AACTACTCGC TTCGGTCGAC 
GACATCGGCC GGCGGATCGA GGAGTCGGCG ACGATGACGG ACGCAGCCGT GCAGCAGACC 
CGGCAGACCA GCGAGCACGT GCTGCAGCTC GCACACGCTG GCGATCGCAT CGGCGACATC 
GTCGGGATGA TCCAGACCAT CGCCCGGCAG ACCAACCTGC TCGCCCTGAA CGCCACCATC 
GAAGCCGCAC GGGCCGGCGA CGCGGGGCGC GGTTTTGCCG TGGTCGCCTT CGAAGTCAAA 
GCCCTCGCCG AGCAGACCGC CAAAGCGACG CACGACATTC AGCGGCAGGT CGCGGATATC 
CAGCAAGCGA CCCGTTCGTC GGCAAGCTCG ATCGACGAGA TCGTCGGCCT GATCGAACGC 
GTCTCCGAAA CAATCGCGAC AATTTCGGCC GCGATCGAGA AGCAGGGCCT CGAGACGCGG 
ACCATGTCGG ACCACGTGGC GAAGGCCGCG AGCGAGACGG TCCATGTCGG GACCAGCATT 
GAGCGGGTGC AGCGCGGCGC CGAGCATGTC GAAAGCGCCT CGCGTGACGT GTTCGCTGCG 
GCGCAGTCGC TGGCGAACGA CAGCAACGTG CTGCGGCGGG AAGTCGCCAA TTTCCTCGGC 
TCGGTGCGTT CGGCCTAG 

 

Protein sequence

MRQLYSASKH ALRSSFNRIK IGLRLKIAML GLIGVALVGS ACLLGLRESA NAERRSEASV 
ALRFDVVQLS ADYLQAGLIA NEFLRTSDDK LIAKHEAAAT AAKRRLQDIE LRLGQSKSDE 
AAKQSTALLT GLNLYLTRFQ NLLSAKRVIG LTDHDGLQGK LRDATRRLEA KLAEIEDPRL 
SVLMLTMRRL EKDFILKGRE KDGDDLIERA SDFAGALAKS DLAADQKKEL TALIGGYKSS 
FLAFMVSQQS LNEEIEDFGS VFARNRPTLD ALITSAEARY RASQASAAQV RNLLNWIIGG 
VTLGVAALAL LVGQRIAGSV TRTTAAMQRL AAGDFGTVLP GLERRDEIGE MARAVEAFKA 
ASQRAAREEA EAKIAQQQIE AEHRRADMHK LADGFEVAIG KVIETVFLAS SSLESSAGSL 
THTAETSRQL TIATASVSSE VSACVGTVAA SAEQLLASVD DIGRRIEESA TMTDAAVQQT 
RQTSEHVLQL AHAGDRIGDI VGMIQTIARQ TNLLALNATI EAARAGDAGR GFAVVAFEVK 
ALAEQTAKAT HDIQRQVADI QQATRSSASS IDEIVGLIER VSETIATISA AIEKQGLETR 
TMSDHVAKAA SETVHVGTSI ERVQRGAEHV ESASRDVFAA AQSLANDSNV LRREVANFLG 
SVRSA