More than 300 homologs were found in PanDaTox collection
for query gene Rpal_4788 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007958  RPD_3904  chemotaxis sensory transducer  69.7 
 
 
566 aa  770    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1840  methyl-accepting chemotaxis sensory transducer  64.35 
 
 
561 aa  712    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.745103 
 
 
-
 
NC_011004  Rpal_4788  methyl-accepting chemotaxis sensory transducer  100 
 
 
561 aa  1124    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1316  methyl-accepting chemotaxis sensory transducer  73.44 
 
 
561 aa  785    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.234166 
 
 
-
 
NC_007778  RPB_1317  methyl-accepting chemotaxis sensory transducer  68.09 
 
 
560 aa  720    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.14669 
 
 
-
 
NC_011004  Rpal_4787  methyl-accepting chemotaxis sensory transducer  67.91 
 
 
561 aa  723    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.708956  n/a   
 
 
-
 
NC_007925  RPC_4104  methyl-accepting chemotaxis sensory transducer  72.55 
 
 
586 aa  790    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.783692  normal 
 
 
-
 
NC_007925  RPC_4105  methyl-accepting chemotaxis sensory transducer  69.52 
 
 
561 aa  691    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.916882  normal 
 
 
-
 
NC_007925  RPC_2846  methyl-accepting chemotaxis sensory transducer  42.06 
 
 
565 aa  369  1e-101  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.430745  normal 
 
 
-
 
NC_009485  BBta_4464  methyl-accepting chemotaxis sensory transducer  46.41 
 
 
573 aa  367  1e-100  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.610641  normal  0.757777 
 
 
-
 
NC_007778  RPB_4280  methyl-accepting chemotaxis sensory transducer  44.22 
 
 
563 aa  359  7e-98  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0158  methyl-accepting chemotaxis sensory transducer  40.21 
 
 
561 aa  353  2.9999999999999997e-96  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3380  methyl-accepting chemotaxis sensory transducer  42.16 
 
 
567 aa  345  1e-93  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.689596 
 
 
-
 
NC_007925  RPC_2149  methyl-accepting chemotaxis sensory transducer  55.43 
 
 
675 aa  333  4e-90  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0391093 
 
 
-
 
NC_007925  RPC_1253  methyl-accepting chemotaxis sensory transducer  42.7 
 
 
567 aa  332  1e-89  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.010155 
 
 
-
 
NC_009485  BBta_6635  methyl-accepting chemotaxis protein  50.94 
 
 
565 aa  328  2.0000000000000001e-88  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.459746  normal  0.104137 
 
 
-
 
NC_010511  M446_2738  methyl-accepting chemotaxis sensory transducer  43.31 
 
 
562 aa  328  2.0000000000000001e-88  Methylobacterium sp. 4-46  Bacteria  normal  0.809654  normal  0.020868 
 
 
-
 
NC_007958  RPD_3547  chemotaxis sensory transducer  49.23 
 
 
566 aa  326  6e-88  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0969  methyl-accepting chemotaxis sensory transducer  50.93 
 
 
562 aa  325  9e-88  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.956339  normal  0.570918 
 
 
-
 
NC_011004  Rpal_4941  methyl-accepting chemotaxis sensory transducer  41.98 
 
 
563 aa  323  7e-87  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.396774  n/a   
 
 
-
 
NC_010505  Mrad2831_0957  methyl-accepting chemotaxis sensory transducer  39.51 
 
 
549 aa  322  8e-87  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.482626 
 
 
-
 
NC_007958  RPD_1918  chemotaxis sensory transducer  48.82 
 
 
688 aa  322  8e-87  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.537222 
 
 
-
 
NC_007958  RPD_0065  chemotaxis sensory transducer  49.87 
 
 
688 aa  322  9.999999999999999e-87  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0714339 
 
 
-
 
NC_010505  Mrad2831_1766  methyl-accepting chemotaxis sensory transducer  40.97 
 
 
575 aa  318  1e-85  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_2744  methyl-accepting chemotaxis sensory transducer  48.43 
 
 
572 aa  318  2e-85  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.696609  normal  0.585687 
 
 
-
 
NC_011004  Rpal_4118  methyl-accepting chemotaxis sensory transducer  49.6 
 
 
567 aa  318  2e-85  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0820  chemotaxis sensory transducer  40.11 
 
 
608 aa  318  2e-85  Methylobacterium extorquens PA1  Bacteria  normal  0.254614  normal  0.216431 
 
 
-
 
NC_009485  BBta_7375  methyl-accepting chemotaxis sensory transducer  50.82 
 
 
655 aa  316  8e-85  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6483  methyl-accepting chemotaxis protein  49.06 
 
 
565 aa  315  9.999999999999999e-85  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.877741  normal 
 
 
-
 
NC_010172  Mext_3147  chemotaxis sensory transducer  50.95 
 
 
561 aa  315  1.9999999999999998e-84  Methylobacterium extorquens PA1  Bacteria  normal  0.0908078  normal 
 
 
-
 
NC_007778  RPB_2250  methyl-accepting chemotaxis sensory transducer  50.52 
 
 
670 aa  314  2.9999999999999996e-84  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4406  methyl-accepting chemotaxis sensory transducer  49.19 
 
 
566 aa  314  2.9999999999999996e-84  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.341232 
 
 
-
 
NC_011757  Mchl_3471  methyl-accepting chemotaxis sensory transducer  50.68 
 
 
561 aa  313  3.9999999999999997e-84  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.130295  normal 
 
 
-
 
NC_011004  Rpal_3598  methyl-accepting chemotaxis sensory transducer  48.99 
 
 
672 aa  313  4.999999999999999e-84  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1795  methyl-accepting chemotaxis sensory transducer  50.39 
 
 
561 aa  313  4.999999999999999e-84  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.432423  normal  0.0230577 
 
 
-
 
NC_010725  Mpop_0741  methyl-accepting chemotaxis sensory transducer  42.32 
 
 
558 aa  313  6.999999999999999e-84  Methylobacterium populi BJ001  Bacteria  normal  0.532986  normal 
 
 
-
 
NC_007778  RPB_0192  methyl-accepting chemotaxis sensory transducer  49.61 
 
 
688 aa  312  9e-84  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1584  chemotaxis sensory transducer  36.91 
 
 
556 aa  312  1e-83  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.596272  n/a   
 
 
-
 
NC_009485  BBta_0644  putative methyl-accepting chemotaxis receptor/sensory transducer  38.69 
 
 
565 aa  310  4e-83  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0779  methyl-accepting chemotaxis sensory transducer with Cache sensor  39.93 
 
 
558 aa  310  5e-83  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0546434  normal  0.151916 
 
 
-
 
NC_007925  RPC_4407  methyl-accepting chemotaxis sensory transducer  48.77 
 
 
566 aa  309  1.0000000000000001e-82  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.365939 
 
 
-
 
NC_011757  Mchl_2346  methyl-accepting chemotaxis sensory transducer  50.96 
 
 
556 aa  307  3e-82  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.395485 
 
 
-
 
NC_007958  RPD_3107  chemotaxis sensory transducer  51 
 
 
674 aa  307  4.0000000000000004e-82  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0664997 
 
 
-
 
NC_010172  Mext_2072  chemotaxis sensory transducer  50.96 
 
 
556 aa  307  4.0000000000000004e-82  Methylobacterium extorquens PA1  Bacteria  normal  0.68132  normal  0.341201 
 
 
-
 
NC_007643  Rru_A1293  methyl-accepting chemotaxis sensory transducer  49.87 
 
 
562 aa  307  4.0000000000000004e-82  Rhodospirillum rubrum ATCC 11170  Bacteria  decreased coverage  0.00511002  n/a   
 
 
-
 
NC_009485  BBta_2905  putative methyl-accepting chemotaxis protein  49.46 
 
 
542 aa  306  5.0000000000000004e-82  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.234112  normal  0.211145 
 
 
-
 
NC_007643  Rru_A1583  chemotaxis sensory transducer  37.54 
 
 
583 aa  306  6e-82  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.105257  n/a   
 
 
-
 
NC_007958  RPD_0994  chemotaxis sensory transducer  50.14 
 
 
656 aa  306  7e-82  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.357708  normal 
 
 
-
 
NC_009485  BBta_0330  putative methyl-accepting chemotaxis receptor/sensory transducer  49.46 
 
 
676 aa  306  8.000000000000001e-82  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0869057 
 
 
-
 
NC_007778  RPB_3545  methyl-accepting chemotaxis sensory transducer  49.45 
 
 
689 aa  305  1.0000000000000001e-81  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.457552  normal  0.598514 
 
 
-
 
NC_011004  Rpal_2025  methyl-accepting chemotaxis sensory transducer  48.27 
 
 
688 aa  305  2.0000000000000002e-81  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0110809  n/a   
 
 
-
 
NC_007643  Rru_A1408  chemotaxis sensory transducer  47.93 
 
 
568 aa  304  3.0000000000000004e-81  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.591131  n/a   
 
 
-
 
NC_009485  BBta_2901  methyl-accepting chemotaxis sensory transducer  51.28 
 
 
674 aa  303  4.0000000000000003e-81  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.14772  normal  0.22504 
 
 
-
 
NC_007643  Rru_A2366  methyl-accepting chemotaxis sensory transducer  36.72 
 
 
560 aa  303  5.000000000000001e-81  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196109  n/a   
 
 
-
 
NC_010505  Mrad2831_3824  methyl-accepting chemotaxis sensory transducer  51.43 
 
 
561 aa  303  6.000000000000001e-81  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1160  chemotaxis sensory transducer  38.9 
 
 
559 aa  302  1e-80  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2484  chemotaxis sensory transducer  46.97 
 
 
563 aa  302  1e-80  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.1562  n/a   
 
 
-
 
NC_007778  RPB_2358  methyl-accepting chemotaxis sensory transducer  49.46 
 
 
673 aa  302  1e-80  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.207811 
 
 
-
 
NC_011004  Rpal_4783  methyl-accepting chemotaxis sensory transducer  49.33 
 
 
730 aa  302  1e-80  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4271  methyl-accepting chemotaxis sensory transducer  47.73 
 
 
567 aa  301  2e-80  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0840  chemotaxis sensory transducer  51.38 
 
 
712 aa  300  4e-80  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.174635 
 
 
-
 
NC_007958  RPD_0995  chemotaxis sensory transducer  49.73 
 
 
656 aa  300  5e-80  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.880627  normal 
 
 
-
 
NC_010725  Mpop_1216  methyl-accepting chemotaxis sensory transducer  49.06 
 
 
562 aa  298  1e-79  Methylobacterium populi BJ001  Bacteria  normal  0.743011  normal  0.567814 
 
 
-
 
NC_007925  RPC_3161  methyl-accepting chemotaxis sensory transducer  48.66 
 
 
731 aa  297  3e-79  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.072786  normal 
 
 
-
 
NC_010725  Mpop_3344  methyl-accepting chemotaxis sensory transducer  51.58 
 
 
561 aa  297  4e-79  Methylobacterium populi BJ001  Bacteria  normal  0.828703  normal 
 
 
-
 
NC_007925  RPC_4147  methyl-accepting chemotaxis sensory transducer  48.17 
 
 
694 aa  296  6e-79  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3804  methyl-accepting chemotaxis sensory transducer  48.54 
 
 
655 aa  296  7e-79  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.772812  normal 
 
 
-
 
NC_010517  Mrad2831_6434  methyl-accepting chemotaxis sensory transducer  46.65 
 
 
557 aa  295  1e-78  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_4561  methyl-accepting chemotaxis sensory transducer  50 
 
 
711 aa  296  1e-78  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5172  methyl-accepting chemotaxis sensory transducer  49.05 
 
 
656 aa  295  2e-78  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2363  methyl-accepting chemotaxis sensory transducer  50.56 
 
 
695 aa  293  4e-78  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2708  methyl-accepting chemotaxis sensory transducer  50.56 
 
 
696 aa  293  6e-78  Methylobacterium sp. 4-46  Bacteria  normal  0.674681  normal  0.192785 
 
 
-
 
NC_007925  RPC_0061  methyl-accepting chemotaxis sensory transducer  48.55 
 
 
674 aa  292  8e-78  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3907  methyl-accepting chemotaxis sensory transducer  47.22 
 
 
565 aa  291  1e-77  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1427  methyl-accepting chemotaxis sensory transducer  48.79 
 
 
562 aa  292  1e-77  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.309452  normal 
 
 
-
 
NC_007925  RPC_1843  methyl-accepting chemotaxis sensory transducer  48.29 
 
 
568 aa  292  1e-77  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.618754 
 
 
-
 
NC_010511  M446_2544  methyl-accepting chemotaxis sensory transducer  52.39 
 
 
566 aa  291  2e-77  Methylobacterium sp. 4-46  Bacteria  normal  0.476321  normal 
 
 
-
 
NC_007925  RPC_4101  methyl-accepting chemotaxis sensory transducer  53.14 
 
 
698 aa  291  2e-77  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2091  methyl-accepting chemotaxis sensory transducer  50.95 
 
 
562 aa  290  3e-77  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0245477 
 
 
-
 
NC_010725  Mpop_2032  methyl-accepting chemotaxis sensory transducer  52.29 
 
 
558 aa  291  3e-77  Methylobacterium populi BJ001  Bacteria  normal  normal  0.176129 
 
 
-
 
NC_007958  RPD_0497  chemotaxis sensory transducer  48.4 
 
 
577 aa  291  3e-77  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0889  methyl-accepting chemotaxis sensory transducer  47.51 
 
 
540 aa  290  6e-77  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1266  chemotaxis sensory transducer  48.53 
 
 
562 aa  290  6e-77  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1321  methyl-accepting chemotaxis sensory transducer  45.27 
 
 
730 aa  289  1e-76  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0177086  normal  0.260794 
 
 
-
 
NC_009485  BBta_2904  putative methyl-accepting chemotaxis protein  49.06 
 
 
568 aa  288  2e-76  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.481458  normal  0.283558 
 
 
-
 
NC_007643  Rru_A0568  chemotaxis sensory transducer  48.01 
 
 
662 aa  288  2e-76  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6717  methyl-accepting chemotaxis sensory transducer  47.72 
 
 
741 aa  288  2e-76  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.447835  normal  0.587139 
 
 
-
 
NC_007958  RPD_2465  chemotaxis sensory transducer  46.89 
 
 
561 aa  288  2e-76  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5909  normal  0.697276 
 
 
-
 
NC_010511  M446_0383  methyl-accepting chemotaxis sensory transducer  46.93 
 
 
559 aa  287  2.9999999999999996e-76  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.50218 
 
 
-
 
NC_009485  BBta_2900  putative methyl-accepting chemotaxis receptor/sensory transducer (chemoreceptor)  47.79 
 
 
675 aa  287  4e-76  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142675  normal  0.173139 
 
 
-
 
NC_010725  Mpop_0223  methyl-accepting chemotaxis sensory transducer  51.25 
 
 
565 aa  287  4e-76  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0153  chemotaxis sensory transducer  46.25 
 
 
602 aa  287  4e-76  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2460  chemotaxis sensory transducer  36.11 
 
 
565 aa  286  5e-76  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0914  methyl-accepting chemotaxis sensory transducer  46.23 
 
 
689 aa  286  5e-76  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.497103 
 
 
-
 
NC_009485  BBta_7508  putative methyl-accepting chemotaxis protein (with a HAMP region)  48.87 
 
 
552 aa  287  5e-76  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.692825  normal 
 
 
-
 
NC_007778  RPB_2983  methyl-accepting chemotaxis sensory transducer  47.03 
 
 
561 aa  286  5.999999999999999e-76  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0323515 
 
 
-
 
NC_010725  Mpop_0581  methyl-accepting chemotaxis sensory transducer  48.02 
 
 
562 aa  286  5.999999999999999e-76  Methylobacterium populi BJ001  Bacteria  normal  0.0281709  decreased coverage  0.00474558 
 
 
-
 
NC_007925  RPC_2742  methyl-accepting chemotaxis sensory transducer  48.28 
 
 
560 aa  286  7e-76  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.429688 
 
 
-
 
NC_009485  BBta_2843  putative histidine kinase, HAMP region  48.18 
 
 
682 aa  285  1.0000000000000001e-75  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4286  methyl-accepting chemotaxis sensory transducer  46.7 
 
 
563 aa  285  2.0000000000000002e-75  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
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