150 homologs were found in PanDaTox collection
for query gene Swoo_4256 on replicon NC_010506
Organism: Shewanella woodyi ATCC 51908



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010506  Swoo_4256  hypothetical protein  100 
 
 
227 aa  480  1e-135  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00000473463  hitchhiker  0.0000809329 
 
 
-
 
NC_009092  Shew_3321  hypothetical protein  68.56 
 
 
257 aa  343  1e-93  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_3099  hypothetical protein  47.19 
 
 
230 aa  219  1.9999999999999999e-56  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0626942 
 
 
-
 
NC_013132  Cpin_3563  protein of unknown function DUF752  40.81 
 
 
223 aa  174  9e-43  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0158975  normal  0.127143 
 
 
-
 
NC_013730  Slin_4488  protein of unknown function DUF752  37.12 
 
 
223 aa  167  8e-41  Spirosoma linguale DSM 74  Bacteria  normal  0.0144966  normal  0.226664 
 
 
-
 
NC_002950  PG2146  hypothetical protein  37.84 
 
 
251 aa  167  2e-40  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_008255  CHU_0640  hypothetical protein  36.61 
 
 
227 aa  163  3e-39  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00000640329  normal  0.493062 
 
 
-
 
NC_013037  Dfer_3871  protein of unknown function DUF752  39.09 
 
 
226 aa  154  7e-37  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.418241  normal 
 
 
-
 
NC_013162  Coch_1602  protein of unknown function DUF752  35.11 
 
 
220 aa  154  1e-36  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_07050  hypothetical protein  35.37 
 
 
226 aa  146  3e-34  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4769  hypothetical protein  33.33 
 
 
221 aa  134  9.999999999999999e-31  Flavobacterium johnsoniae UW101  Bacteria  normal  0.497303  n/a   
 
 
-
 
NC_013061  Phep_1235  protein of unknown function DUF752  32.46 
 
 
226 aa  127  1.0000000000000001e-28  Pedobacter heparinus DSM 2366  Bacteria  normal  0.887893  normal 
 
 
-
 
NC_008025  Dgeo_1456  hypothetical protein  30.49 
 
 
225 aa  101  1e-20  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.439461  normal  0.0456624 
 
 
-
 
NC_008044  TM1040_0147  hypothetical protein  31.75 
 
 
227 aa  93.6  2e-18  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00930427  normal 
 
 
-
 
NC_008686  Pden_2336  hypothetical protein  32.39 
 
 
218 aa  93.2  3e-18  Paracoccus denitrificans PD1222  Bacteria  normal  0.0305292  normal 
 
 
-
 
NC_007973  Rmet_1887  5-methylaminomethyl-2-thiouridine methyltransferase  28.27 
 
 
672 aa  90.9  1e-17  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1378  5-methylaminomethyl-2-thiouridine methyltransferase  30.18 
 
 
668 aa  87.8  1e-16  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3384  hypothetical protein  28.45 
 
 
705 aa  87  2e-16  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0067  5-methylaminomethyl-2-thiouridine methyltransferase  29.68 
 
 
657 aa  86.7  3e-16  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1538  5-methylaminomethyl-2-thiouridine methyltransferase  28.26 
 
 
672 aa  85.9  5e-16  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0998844 
 
 
-
 
NC_003295  RSc1709  5-methylaminomethyl-2-thiouridine methyltransferase  27.9 
 
 
657 aa  84.7  0.000000000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0318232 
 
 
-
 
NC_007802  Jann_0140  hypothetical protein  30.66 
 
 
218 aa  84.3  0.000000000000001  Jannaschia sp. CCS1  Bacteria  normal  0.946459  normal 
 
 
-
 
NC_008785  BMASAVP1_A3396  5-methylaminomethyl-2-thiouridine methyltransferase  29.06 
 
 
708 aa  84.3  0.000000000000001  Burkholderia mallei SAVP1  Bacteria  normal  0.145892  n/a   
 
 
-
 
NC_009074  BURPS668_0003  5-methylaminomethyl-2-thiouridine methyltransferase  29.06 
 
 
708 aa  84.3  0.000000000000001  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_3066  5-methylaminomethyl-2-thiouridine methyltransferase  28.05 
 
 
655 aa  83.2  0.000000000000003  Burkholderia phymatum STM815  Bacteria  normal  normal  0.16811 
 
 
-
 
NC_009654  Mmwyl1_3401  hypothetical protein  27.35 
 
 
674 aa  82.4  0.000000000000006  Marinomonas sp. MWYL1  Bacteria  normal  0.473665  normal 
 
 
-
 
NC_006348  BMA2914  5-methylaminomethyl-2-thiouridine methyltransferase  27.31 
 
 
660 aa  82  0.000000000000007  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0217  5-methylaminomethyl-2-thiouridine methyltransferase  27.31 
 
 
660 aa  82  0.000000000000007  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3808  hypothetical protein  28.28 
 
 
682 aa  81.3  0.00000000000001  Colwellia psychrerythraea 34H  Bacteria  normal  0.424966  n/a   
 
 
-
 
NC_008836  BMA10229_A1628  5-methylaminomethyl-2-thiouridine methyltransferase  28.69 
 
 
711 aa  81.3  0.00000000000001  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0003  5-methylaminomethyl-2-thiouridine methyltransferase  28.69 
 
 
711 aa  81.3  0.00000000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2973  5-methylaminomethyl-2-thiouridine methyltransferase  28.69 
 
 
711 aa  81.3  0.00000000000001  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0152  protein of unknown function DUF752  28.64 
 
 
230 aa  80.9  0.00000000000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2850  5-methylaminomethyl-2-thiouridine methyltransferase  30.04 
 
 
644 aa  80.1  0.00000000000002  Dechloromonas aromatica RCB  Bacteria  normal  0.413253  normal  0.437245 
 
 
-
 
NC_007651  BTH_I0003  5-methylaminomethyl-2-thiouridine methyltransferase  26.99 
 
 
657 aa  80.1  0.00000000000003  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1956  5-methylaminomethyl-2-thiouridine methyltransferase  26.75 
 
 
644 aa  79.7  0.00000000000004  Thauera sp. MZ1T  Bacteria  normal  0.243551  n/a   
 
 
-
 
NC_009620  Smed_4486  hypothetical protein  28.7 
 
 
241 aa  79.3  0.00000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0142  hypothetical protein  30.41 
 
 
242 aa  78.6  0.00000000000008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4505  5-methylaminomethyl-2-thiouridine methyltransferase  29.6 
 
 
656 aa  78.2  0.0000000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_1833  protein of unknown function DUF752  27.35 
 
 
229 aa  77  0.0000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  0.253186  normal 
 
 
-
 
NC_011989  Avi_3359  hypothetical protein  28.84 
 
 
219 aa  77.4  0.0000000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0757  protein of unknown function DUF752  25.7 
 
 
500 aa  77.4  0.0000000000002  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_1277  5-methylaminomethyl-2-thiouridine methyltransferase  26.29 
 
 
667 aa  77.4  0.0000000000002  Campylobacter hominis ATCC BAA-381  Bacteria  normal  0.0226023  n/a   
 
 
-
 
NC_008576  Mmc1_2377  hypothetical protein  29.65 
 
 
667 aa  76.3  0.0000000000003  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.954774 
 
 
-
 
NC_013946  Mrub_1737  hypothetical protein  28.7 
 
 
225 aa  76.6  0.0000000000003  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2872  5-methylaminomethyl-2-thiouridine methyltransferase  27.83 
 
 
666 aa  76.3  0.0000000000004  Enterobacter sp. 638  Bacteria  normal  0.715577  normal  0.0703666 
 
 
-
 
NC_013421  Pecwa_1458  5-methylaminomethyl-2-thiouridine methyltransferase  28.38 
 
 
675 aa  76.3  0.0000000000004  Pectobacterium wasabiae WPP163  Bacteria  normal  0.622829  n/a   
 
 
-
 
NC_010682  Rpic_1871  5-methylaminomethyl-2-thiouridine methyltransferase  27.9 
 
 
672 aa  76.3  0.0000000000004  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0302238 
 
 
-
 
NC_009800  EcHS_A2475  5-methylaminomethyl-2-thiouridine methyltransferase  28.7 
 
 
668 aa  76.3  0.0000000000004  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1328  5-methylaminomethyl-2-thiouridine methyltransferase  28.7 
 
 
668 aa  76.3  0.0000000000004  Escherichia coli ATCC 8739  Bacteria  normal  0.831924  normal 
 
 
-
 
NC_011312  VSAL_I1070  5-methylaminomethyl-2-thiouridine methyltransferase  28.02 
 
 
680 aa  75.9  0.0000000000005  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.388206  n/a   
 
 
-
 
NC_010498  EcSMS35_2481  5-methylaminomethyl-2-thiouridine methyltransferase  28.26 
 
 
668 aa  75.5  0.0000000000006  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_03106  5-methylaminomethyl-2-thiouridine methyltransferase  27.63 
 
 
672 aa  75.1  0.0000000000008  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012791  Vapar_2983  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  26.27 
 
 
620 aa  74.3  0.000000000001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_3465  5-methylaminomethyl-2-thiouridine methyltransferase  27.83 
 
 
668 aa  74.7  0.000000000001  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_007577  PMT9312_0612  hypothetical protein  23.83 
 
 
301 aa  74.7  0.000000000001  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.930586  n/a   
 
 
-
 
CP001637  EcDH1_1332  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  28.26 
 
 
668 aa  73.9  0.000000000002  Escherichia coli DH1  Bacteria  normal  0.602375  n/a   
 
 
-
 
NC_012917  PC1_2806  5-methylaminomethyl-2-thiouridine methyltransferase  26.27 
 
 
675 aa  73.9  0.000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.641074  n/a   
 
 
-
 
NC_010658  SbBS512_E2702  5-methylaminomethyl-2-thiouridine methyltransferase  28.26 
 
 
668 aa  73.9  0.000000000002  Shigella boydii CDC 3083-94  Bacteria  normal  0.673186  n/a   
 
 
-
 
CP001509  ECD_02249  hypothetical protein  28.26 
 
 
668 aa  73.6  0.000000000003  Escherichia coli BL21(DE3)  Bacteria  normal  0.425785  n/a   
 
 
-
 
NC_012912  Dd1591_1358  5-methylaminomethyl-2-thiouridine methyltransferase  28.26 
 
 
672 aa  73.2  0.000000000003  Dickeya zeae Ech1591  Bacteria  normal  0.0608182  n/a   
 
 
-
 
NC_007614  Nmul_A1927  hypothetical protein  27.15 
 
 
617 aa  73.2  0.000000000003  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.224364  n/a   
 
 
-
 
NC_012892  B21_02209  hypothetical protein  28.26 
 
 
668 aa  73.6  0.000000000003  Escherichia coli BL21  Bacteria  normal  0.334228  n/a   
 
 
-
 
NC_008825  Mpe_A1964  hypothetical protein  26.25 
 
 
653 aa  72.8  0.000000000004  Methylibium petroleiphilum PM1  Bacteria  normal  0.117707  normal 
 
 
-
 
NC_011094  SeSA_A2608  5-methylaminomethyl-2-thiouridine methyltransferase  26.52 
 
 
666 aa  72  0.000000000006  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_2619  5-methylaminomethyl-2-thiouridine methyltransferase  27.59 
 
 
668 aa  72.4  0.000000000006  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0664  5-methylaminomethyl-2-thiouridine methyltransferase  25 
 
 
676 aa  71.6  0.000000000009  Haemophilus somnus 129PT  Bacteria  normal  0.0436264  n/a   
 
 
-
 
NC_011901  Tgr7_1861  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  26.27 
 
 
661 aa  70.9  0.00000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_1751  5-methylaminomethyl-2-thiouridine methyltransferase  26.17 
 
 
654 aa  70.5  0.00000000002  Pseudomonas putida KT2440  Bacteria  normal  0.266449  normal 
 
 
-
 
NC_011205  SeD_A2732  5-methylaminomethyl-2-thiouridine methyltransferase  26.09 
 
 
666 aa  70.5  0.00000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4098  5-methylaminomethyl-2-thiouridine methyltransferase  26.34 
 
 
659 aa  70.5  0.00000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0879  hypothetical protein  27.19 
 
 
266 aa  70.9  0.00000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2621  5-methylaminomethyl-2-thiouridine methyltransferase  26.09 
 
 
666 aa  70.9  0.00000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.00000350397 
 
 
-
 
NC_012850  Rleg_3155  protein of unknown function DUF752  27.85 
 
 
238 aa  70.5  0.00000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.326369 
 
 
-
 
NC_013456  VEA_002869  5-methylaminomethyl-2-thiouridine-forming enzyme MnmC  26.96 
 
 
672 aa  70.9  0.00000000002  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00103068  n/a   
 
 
-
 
NC_011149  SeAg_B2519  5-methylaminomethyl-2-thiouridine methyltransferase  26.09 
 
 
666 aa  70.5  0.00000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2539  hypothetical protein  27.52 
 
 
266 aa  70.5  0.00000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0656342  normal 
 
 
-
 
NC_009512  Pput_3963  5-methylaminomethyl-2-thiouridine methyltransferase  26.17 
 
 
654 aa  70.9  0.00000000002  Pseudomonas putida F1  Bacteria  normal  0.94523  normal  0.0279642 
 
 
-
 
NC_010501  PputW619_1359  5-methylaminomethyl-2-thiouridine methyltransferase  26.79 
 
 
657 aa  70.1  0.00000000002  Pseudomonas putida W619  Bacteria  normal  0.490609  normal  0.307096 
 
 
-
 
NC_010322  PputGB1_1343  5-methylaminomethyl-2-thiouridine methyltransferase  26.17 
 
 
654 aa  70.1  0.00000000002  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2568  5-methylaminomethyl-2-thiouridine methyltransferase  26.09 
 
 
666 aa  69.7  0.00000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.580805  normal 
 
 
-
 
NC_008740  Maqu_1170  hypothetical protein  27.15 
 
 
631 aa  70.1  0.00000000003  Marinobacter aquaeolei VT8  Bacteria  normal  0.285143  n/a   
 
 
-
 
NC_008816  A9601_06681  hypothetical protein  24.3 
 
 
294 aa  69.7  0.00000000003  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.245122  n/a   
 
 
-
 
NC_012039  Cla_0621  5-methylaminomethyl-2-thiouridine methyltransferase  27.31 
 
 
612 aa  69.7  0.00000000003  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_34940  5-methylaminomethyl-2-thiouridine methyltransferase  24.69 
 
 
653 aa  69.7  0.00000000004  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3369  5-methylaminomethyl-2-thiouridine methyltransferase  28.26 
 
 
673 aa  68.9  0.00000000005  Serratia proteamaculans 568  Bacteria  decreased coverage  0.00235092  normal 
 
 
-
 
NC_007969  Pcryo_1977  hypothetical protein  26 
 
 
697 aa  68.9  0.00000000006  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_1941  hypothetical protein  24.76 
 
 
298 aa  68.6  0.00000000008  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_1076  protein of unknown function DUF752  27.27 
 
 
619 aa  68.6  0.00000000009  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.506712  normal 
 
 
-
 
NC_008709  Ping_1996  fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  26.82 
 
 
690 aa  68.2  0.0000000001  Psychromonas ingrahamii 37  Bacteria  normal  0.155036  normal  0.387333 
 
 
-
 
NC_008752  Aave_3048  hypothetical protein  25.91 
 
 
635 aa  68.2  0.0000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  0.115559  normal  0.0258128 
 
 
-
 
NC_007947  Mfla_1390  hypothetical protein  26.27 
 
 
622 aa  67  0.0000000002  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.909333 
 
 
-
 
NC_009091  P9301_06381  hypothetical protein  22.86 
 
 
303 aa  67.4  0.0000000002  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2891  protein of unknown function DUF752  26.92 
 
 
240 aa  67  0.0000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0866147  normal  0.0591468 
 
 
-
 
NC_009708  YpsIP31758_1410  5-methylaminomethyl-2-thiouridine methyltransferase  26.87 
 
 
689 aa  67.4  0.0000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000203784  n/a   
 
 
-
 
NC_010159  YpAngola_A0372  5-methylaminomethyl-2-thiouridine methyltransferase  26.87 
 
 
689 aa  67  0.0000000002  Yersinia pestis Angola  Bacteria  hitchhiker  0.000353518  normal 
 
 
-
 
NC_010465  YPK_1519  5-methylaminomethyl-2-thiouridine methyltransferase  26.87 
 
 
689 aa  67  0.0000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0252518  n/a   
 
 
-
 
NC_012880  Dd703_2586  5-methylaminomethyl-2-thiouridine methyltransferase  27.9 
 
 
675 aa  66.6  0.0000000003  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3932  5-methylaminomethyl-2-thiouridine methyltransferase  29.22 
 
 
656 aa  66.6  0.0000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1694  5-methylaminomethyl-2-thiouridine methyltransferase  26.64 
 
 
674 aa  66.6  0.0000000003  Vibrio cholerae O395  Bacteria  hitchhiker  0.00252388  n/a   
 
 
-
 
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