162 homologs were found in PanDaTox collection
for query gene Rsph17029_2539 on replicon NC_009049
Organism: Rhodobacter sphaeroides ATCC 17029



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009049  Rsph17029_2539  hypothetical protein  100 
 
 
266 aa  525  1e-148  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0656342  normal 
 
 
-
 
NC_007493  RSP_0879  hypothetical protein  98.87 
 
 
266 aa  518  1e-146  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0142  hypothetical protein  73.86 
 
 
242 aa  374  1e-103  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2336  hypothetical protein  62.73 
 
 
218 aa  257  2e-67  Paracoccus denitrificans PD1222  Bacteria  normal  0.0305292  normal 
 
 
-
 
NC_008044  TM1040_0147  hypothetical protein  61.86 
 
 
227 aa  255  6e-67  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00930427  normal 
 
 
-
 
NC_009952  Dshi_0152  protein of unknown function DUF752  60.19 
 
 
230 aa  248  5e-65  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0140  hypothetical protein  57.14 
 
 
218 aa  235  7e-61  Jannaschia sp. CCS1  Bacteria  normal  0.946459  normal 
 
 
-
 
NC_009439  Pmen_3230  5-methylaminomethyl-2-thiouridine methyltransferase  47.37 
 
 
657 aa  187  2e-46  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_3384  hypothetical protein  42.37 
 
 
705 aa  182  7e-45  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3369  5-methylaminomethyl-2-thiouridine methyltransferase  45.99 
 
 
673 aa  181  1e-44  Serratia proteamaculans 568  Bacteria  decreased coverage  0.00235092  normal 
 
 
-
 
NC_010465  YPK_1519  5-methylaminomethyl-2-thiouridine methyltransferase  45.3 
 
 
689 aa  180  2e-44  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0252518  n/a   
 
 
-
 
NC_012917  PC1_2806  5-methylaminomethyl-2-thiouridine methyltransferase  44.87 
 
 
675 aa  180  2e-44  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.641074  n/a   
 
 
-
 
NC_010159  YpAngola_A0372  5-methylaminomethyl-2-thiouridine methyltransferase  45.3 
 
 
689 aa  180  2e-44  Yersinia pestis Angola  Bacteria  hitchhiker  0.000353518  normal 
 
 
-
 
NC_009708  YpsIP31758_1410  5-methylaminomethyl-2-thiouridine methyltransferase  45.3 
 
 
689 aa  180  2e-44  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000203784  n/a   
 
 
-
 
NC_009656  PSPA7_1671  5-methylaminomethyl-2-thiouridine methyltransferase  49.12 
 
 
654 aa  178  9e-44  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_012912  Dd1591_1358  5-methylaminomethyl-2-thiouridine methyltransferase  44.96 
 
 
672 aa  177  1e-43  Dickeya zeae Ech1591  Bacteria  normal  0.0608182  n/a   
 
 
-
 
NC_013421  Pecwa_1458  5-methylaminomethyl-2-thiouridine methyltransferase  44.3 
 
 
675 aa  176  5e-43  Pectobacterium wasabiae WPP163  Bacteria  normal  0.622829  n/a   
 
 
-
 
NC_012880  Dd703_2586  5-methylaminomethyl-2-thiouridine methyltransferase  44.12 
 
 
675 aa  174  9.999999999999999e-43  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_19400  5-methylaminomethyl-2-thiouridine methyltransferase  48.67 
 
 
654 aa  172  2.9999999999999996e-42  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0825831  normal 
 
 
-
 
NC_007963  Csal_0704  hypothetical protein  46.09 
 
 
699 aa  172  5e-42  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002869  5-methylaminomethyl-2-thiouridine-forming enzyme MnmC  40.25 
 
 
672 aa  172  5e-42  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00103068  n/a   
 
 
-
 
NC_011369  Rleg2_2891  protein of unknown function DUF752  47.09 
 
 
240 aa  172  5e-42  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0866147  normal  0.0591468 
 
 
-
 
NC_011901  Tgr7_1861  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  46.4 
 
 
661 aa  171  9e-42  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4098  5-methylaminomethyl-2-thiouridine methyltransferase  44.89 
 
 
659 aa  171  1e-41  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1694  5-methylaminomethyl-2-thiouridine methyltransferase  41.88 
 
 
674 aa  170  2e-41  Vibrio cholerae O395  Bacteria  hitchhiker  0.00252388  n/a   
 
 
-
 
NC_008740  Maqu_1170  hypothetical protein  44.16 
 
 
631 aa  170  3e-41  Marinobacter aquaeolei VT8  Bacteria  normal  0.285143  n/a   
 
 
-
 
NC_011353  ECH74115_3465  5-methylaminomethyl-2-thiouridine methyltransferase  42.02 
 
 
668 aa  169  4e-41  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_1328  5-methylaminomethyl-2-thiouridine methyltransferase  42.44 
 
 
668 aa  169  4e-41  Escherichia coli ATCC 8739  Bacteria  normal  0.831924  normal 
 
 
-
 
NC_009800  EcHS_A2475  5-methylaminomethyl-2-thiouridine methyltransferase  42.44 
 
 
668 aa  169  4e-41  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3359  hypothetical protein  45.79 
 
 
219 aa  169  6e-41  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2872  5-methylaminomethyl-2-thiouridine methyltransferase  42.92 
 
 
666 aa  169  6e-41  Enterobacter sp. 638  Bacteria  normal  0.715577  normal  0.0703666 
 
 
-
 
NC_012850  Rleg_3155  protein of unknown function DUF752  46.15 
 
 
238 aa  168  1e-40  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.326369 
 
 
-
 
CP001509  ECD_02249  hypothetical protein  41.6 
 
 
668 aa  167  2e-40  Escherichia coli BL21(DE3)  Bacteria  normal  0.425785  n/a   
 
 
-
 
NC_007947  Mfla_1390  hypothetical protein  45.63 
 
 
622 aa  167  2e-40  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.909333 
 
 
-
 
NC_012892  B21_02209  hypothetical protein  41.6 
 
 
668 aa  167  2e-40  Escherichia coli BL21  Bacteria  normal  0.334228  n/a   
 
 
-
 
NC_009783  VIBHAR_03106  5-methylaminomethyl-2-thiouridine methyltransferase  40.25 
 
 
672 aa  167  2e-40  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009801  EcE24377A_2619  5-methylaminomethyl-2-thiouridine methyltransferase  42.02 
 
 
668 aa  167  2e-40  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1332  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  41.6 
 
 
668 aa  166  2.9999999999999998e-40  Escherichia coli DH1  Bacteria  normal  0.602375  n/a   
 
 
-
 
NC_004578  PSPTO_1639  oxidoreductase, FAD-binding protein  43.56 
 
 
660 aa  166  2.9999999999999998e-40  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.562541  n/a   
 
 
-
 
NC_010658  SbBS512_E2702  5-methylaminomethyl-2-thiouridine methyltransferase  41.6 
 
 
668 aa  166  2.9999999999999998e-40  Shigella boydii CDC 3083-94  Bacteria  normal  0.673186  n/a   
 
 
-
 
NC_008309  HS_0664  5-methylaminomethyl-2-thiouridine methyltransferase  40.62 
 
 
676 aa  166  2.9999999999999998e-40  Haemophilus somnus 129PT  Bacteria  normal  0.0436264  n/a   
 
 
-
 
NC_010498  EcSMS35_2481  5-methylaminomethyl-2-thiouridine methyltransferase  42.02 
 
 
668 aa  166  2.9999999999999998e-40  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3742  5-methylaminomethyl-2-thiouridine methyltransferase  43.86 
 
 
665 aa  165  9e-40  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  decreased coverage  0.0063824 
 
 
-
 
NC_010322  PputGB1_1343  5-methylaminomethyl-2-thiouridine methyltransferase  39.82 
 
 
654 aa  165  9e-40  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3401  hypothetical protein  39.66 
 
 
674 aa  164  1.0000000000000001e-39  Marinomonas sp. MWYL1  Bacteria  normal  0.473665  normal 
 
 
-
 
NC_012560  Avin_34940  5-methylaminomethyl-2-thiouridine methyltransferase  44.44 
 
 
653 aa  164  2.0000000000000002e-39  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2621  5-methylaminomethyl-2-thiouridine methyltransferase  43.46 
 
 
666 aa  163  3e-39  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.00000350397 
 
 
-
 
NC_009620  Smed_4486  hypothetical protein  44.84 
 
 
241 aa  163  3e-39  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1751  5-methylaminomethyl-2-thiouridine methyltransferase  39.38 
 
 
654 aa  162  5.0000000000000005e-39  Pseudomonas putida KT2440  Bacteria  normal  0.266449  normal 
 
 
-
 
NC_011149  SeAg_B2519  5-methylaminomethyl-2-thiouridine methyltransferase  43.04 
 
 
666 aa  162  5.0000000000000005e-39  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A2568  5-methylaminomethyl-2-thiouridine methyltransferase  43.04 
 
 
666 aa  162  6e-39  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.580805  normal 
 
 
-
 
NC_011205  SeD_A2732  5-methylaminomethyl-2-thiouridine methyltransferase  42.62 
 
 
666 aa  161  8.000000000000001e-39  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2608  5-methylaminomethyl-2-thiouridine methyltransferase  42.62 
 
 
666 aa  161  9e-39  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3963  5-methylaminomethyl-2-thiouridine methyltransferase  39.38 
 
 
654 aa  160  1e-38  Pseudomonas putida F1  Bacteria  normal  0.94523  normal  0.0279642 
 
 
-
 
NC_010501  PputW619_1359  5-methylaminomethyl-2-thiouridine methyltransferase  38.6 
 
 
657 aa  160  2e-38  Pseudomonas putida W619  Bacteria  normal  0.490609  normal  0.307096 
 
 
-
 
NC_011312  VSAL_I1070  5-methylaminomethyl-2-thiouridine methyltransferase  40.08 
 
 
680 aa  160  3e-38  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.388206  n/a   
 
 
-
 
NC_007298  Daro_2850  5-methylaminomethyl-2-thiouridine methyltransferase  45.07 
 
 
644 aa  159  6e-38  Dechloromonas aromatica RCB  Bacteria  normal  0.413253  normal  0.437245 
 
 
-
 
NC_008709  Ping_1996  fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  37.07 
 
 
690 aa  158  9e-38  Psychromonas ingrahamii 37  Bacteria  normal  0.155036  normal  0.387333 
 
 
-
 
NC_011138  MADE_01191  fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  42.55 
 
 
741 aa  157  1e-37  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1927  hypothetical protein  42.36 
 
 
617 aa  155  7e-37  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.224364  n/a   
 
 
-
 
NC_003295  RSc1709  5-methylaminomethyl-2-thiouridine methyltransferase  43.87 
 
 
657 aa  152  7e-36  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0318232 
 
 
-
 
NC_013889  TK90_1076  protein of unknown function DUF752  41.53 
 
 
619 aa  152  7e-36  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.506712  normal 
 
 
-
 
NC_010338  Caul_0866  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  45.81 
 
 
601 aa  150  2e-35  Caulobacter sp. K31  Bacteria  normal  normal  0.205507 
 
 
-
 
NC_009524  PsycPRwf_1989  hypothetical protein  35.66 
 
 
739 aa  149  5e-35  Psychrobacter sp. PRwf-1  Bacteria  normal  decreased coverage  0.000136918 
 
 
-
 
NC_007969  Pcryo_1977  hypothetical protein  36.29 
 
 
697 aa  149  6e-35  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0003  5-methylaminomethyl-2-thiouridine methyltransferase  42.41 
 
 
657 aa  149  7e-35  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0130  hypothetical protein  39.56 
 
 
674 aa  148  8e-35  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.000346728  n/a   
 
 
-
 
NC_011662  Tmz1t_1956  5-methylaminomethyl-2-thiouridine methyltransferase  43.26 
 
 
644 aa  148  1.0000000000000001e-34  Thauera sp. MZ1T  Bacteria  normal  0.243551  n/a   
 
 
-
 
NC_008576  Mmc1_2377  hypothetical protein  38.39 
 
 
667 aa  147  2.0000000000000003e-34  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.954774 
 
 
-
 
NC_003910  CPS_3808  hypothetical protein  32.64 
 
 
682 aa  146  4.0000000000000006e-34  Colwellia psychrerythraea 34H  Bacteria  normal  0.424966  n/a   
 
 
-
 
NC_007204  Psyc_1701  hypothetical protein  35.89 
 
 
696 aa  146  4.0000000000000006e-34  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1378  5-methylaminomethyl-2-thiouridine methyltransferase  41.98 
 
 
668 aa  144  1e-33  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1538  5-methylaminomethyl-2-thiouridine methyltransferase  42.45 
 
 
672 aa  144  1e-33  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0998844 
 
 
-
 
NC_010682  Rpic_1871  5-methylaminomethyl-2-thiouridine methyltransferase  41.98 
 
 
672 aa  144  1e-33  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0302238 
 
 
-
 
NC_008785  BMASAVP1_A3396  5-methylaminomethyl-2-thiouridine methyltransferase  41.41 
 
 
708 aa  142  7e-33  Burkholderia mallei SAVP1  Bacteria  normal  0.145892  n/a   
 
 
-
 
NC_009074  BURPS668_0003  5-methylaminomethyl-2-thiouridine methyltransferase  41.41 
 
 
708 aa  142  7e-33  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2517  hypothetical protein  41.52 
 
 
585 aa  141  9e-33  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp1489  hypothetical protein  32.22 
 
 
666 aa  141  9.999999999999999e-33  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006348  BMA2914  5-methylaminomethyl-2-thiouridine methyltransferase  40.87 
 
 
660 aa  140  1.9999999999999998e-32  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl1494  hypothetical protein  32.22 
 
 
666 aa  140  1.9999999999999998e-32  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007434  BURPS1710b_0217  5-methylaminomethyl-2-thiouridine methyltransferase  40.87 
 
 
660 aa  140  1.9999999999999998e-32  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_3066  5-methylaminomethyl-2-thiouridine methyltransferase  41.07 
 
 
655 aa  140  1.9999999999999998e-32  Burkholderia phymatum STM815  Bacteria  normal  normal  0.16811 
 
 
-
 
NC_007951  Bxe_A4505  5-methylaminomethyl-2-thiouridine methyltransferase  40.18 
 
 
656 aa  140  1.9999999999999998e-32  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1887  5-methylaminomethyl-2-thiouridine methyltransferase  41.59 
 
 
672 aa  139  3e-32  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008836  BMA10229_A1628  5-methylaminomethyl-2-thiouridine methyltransferase  40.87 
 
 
711 aa  140  3e-32  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0003  5-methylaminomethyl-2-thiouridine methyltransferase  40.87 
 
 
711 aa  140  3e-32  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2973  5-methylaminomethyl-2-thiouridine methyltransferase  40.87 
 
 
711 aa  140  3e-32  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3932  5-methylaminomethyl-2-thiouridine methyltransferase  40.18 
 
 
656 aa  139  7e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3653  hypothetical protein  37.89 
 
 
249 aa  137  1e-31  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_2983  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  39.21 
 
 
620 aa  137  2e-31  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0067  5-methylaminomethyl-2-thiouridine methyltransferase  40.18 
 
 
657 aa  134  9.999999999999999e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1471  hypothetical protein  36.69 
 
 
707 aa  133  3e-30  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1641  5-methylaminomethyl-2-thiouridine methyltransferase  40 
 
 
616 aa  132  3.9999999999999996e-30  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.168869  normal 
 
 
-
 
NC_008825  Mpe_A1964  hypothetical protein  41.31 
 
 
653 aa  132  6e-30  Methylibium petroleiphilum PM1  Bacteria  normal  0.117707  normal 
 
 
-
 
NC_011992  Dtpsy_1926  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  37.5 
 
 
639 aa  125  5e-28  Acidovorax ebreus TPSY  Bacteria  normal  0.218262  n/a   
 
 
-
 
NC_008752  Aave_3048  hypothetical protein  39.35 
 
 
635 aa  125  6e-28  Acidovorax citrulli AAC00-1  Bacteria  normal  0.115559  normal  0.0258128 
 
 
-
 
NC_008782  Ajs_1796  hypothetical protein  37.5 
 
 
639 aa  125  6e-28  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011728  BbuZS7_0764  hypothetical protein  30.09 
 
 
225 aa  124  1e-27  Borrelia burgdorferi ZS7  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1404  5-methylaminomethyl-2-thiouridine methyltransferase  32.41 
 
 
613 aa  122  9e-27  Campylobacter jejuni RM1221  Bacteria  normal  0.628111  n/a   
 
 
-
 
NC_012039  Cla_0621  5-methylaminomethyl-2-thiouridine methyltransferase  30.7 
 
 
612 aa  121  9e-27  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
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