| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1471 |
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| Symbol | |
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| ID | 3966188 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1893950 |
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| End bp | 1896073 |
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| Gene Length | 2124 bp |
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| Protein Length | 707 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637920548 |
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| Product | hypothetical protein |
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| Protein accession | YP_526945 |
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| Protein GI | 90021118 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAAAA AACTCGAGCA CGAATATATT GCACACACAG AGCGCCCAGC GCTTACGTGG
GATGAACAAG GCCAGCCCTA CTCTACCGAA TACGACGATG TGTATTACTC CACAACAGAT
GCGCTGGCCG AAACTCGCTT TGTATTTTTA GATAAAAACA ATTTAGCCGC TCGCTGGCCA
CACTTAACTC ACCAACAAAC CTTTACGGTT TGCGAGACAG GCTTTGGCGC AGGGTTAAAC
TTTTTAGCCA CTTGGCAGTT GTGGCGCAGC ACACGCCCCT CTGGGCGAAT GCATTTTATC
TCGTTTGAAA AACACCCCCT TAACAGCGCT CAAATAGCAA AAGCACTAAA CCGCTGGCCC
CAATTTGCAG CGCTAAGTGA ACAGCTGTGC GCGCTATACC CACCCTCTAG CGCGCCAGGG
TTTCACCATA TAACACTTGA TGAAGGGCAA GTGCAGCTAA CCTTGTATTT TGGCGACGCA
AAAACTGGGT TAGAGCAATT GGTTTTGGCC CACGGCGCAA TAAACAAAAT AGAAAACCGC
AGCAGCTGCA TTGGCGATAA ACAACAGTTG GTCGATGCGT GGTATTTCGA TGGTTTTACT
CCAGCCAAAA ACCCGTCCAT TTGGCAGCCA TGTATCTTTA CCCTTGCGGC AGAACTAAGC
AAAAGCACAA CTACCTTCGC CACTTTTACC AGCGCTCGCT CGGTAAGAGA CGCAATAGAA
AACGCGGGTT TTAAGTGGCA AAAAGTGCCG GGCTTTGGCT TAAAACGCGA GATGCTTTTT
GGCACATTTG AGCAACACCC TTTTGCTCAA GTCGACCCCA ACAAAGCGCC CACTACAGCA
CACAGAAGTT ACCGCAAACG CAATGGCGTA CAACATAGCT GGCATCTTCA AACTGCAAAC
AGTGAGCACC AGCCCCCCAA AACAGCAATC GTTATTGGCG GCGGACTAGC TGGGGCGCAC
GCGGCGCACG CTCTTGCGCT TAGGGGCGTT AATGTAACCT TACTGGAGCG CGCACCTAAT
CTTGCCAATG GCGCTTCCAG CAACCTGCAA GGGTTGGTAT ACACTCGCCT GTCGCTTAGC
GGAAACCCGT TAAGCCGCTT CAACATGGCA GCCCAACTGT ATGCAGACCG CTTTTATCAC
AGCCATAACT TCTACACCAC CTGTGGTGAA GCCTCCGGCG TGCTTCACCT AGCAACAAGT
AACGCCATAG AAAAACAATT AAGAAACATT GGCGAGCAAC ACGCAAGCAC CGATCCCAAC
CCCATATTTA ACTGGGTAGA ACAACAAGAC ACAGAACAAG CGGTAGGCGT AAGCACATCT
ACTGGCGGGT TATTTATACG TAACTCTGGC TGGCTAAACC CCGTGCAGCT GTGCCATGCA
CTAACCAACC ACCCGCGTAT AACCAAGCTC TTTAATAGCG ATGCTGCCCA ACTGCAACAA
GATGCTCACG GCCAATGGTT CGCCCTAACA AACGACGGCC ACAAGCTTGC CAGCGCAGAC
ATTACCGTAA TTTGTACTGC TCGCGACGCG AAACACCTTG CGCAAACAGC ATACTTACCT
ATGCGCAACA TACGCGGCCA AGTGTCCCAC CTTAGTAGTC ATGGGTTGTC GCAACGTTTG
CACGCATCTG TTTGTGGTGC AGGTTATATT GCCCCAGCGC AAAGTGGCAT CCACTGCGCT
GGCGCCTCTT TTAATTTGCA CGAAAACACC CTCGACTTAC GCGAAGAAGA TCATCAATTT
AATATTGATA ACCTAGCCTC GATGAGTAAA TCGCTCACGT TCAACCCGCC ACTTACCACC
CTCGATGGTA AAGTAGGGTT TCGAGCCACC ACGCCAGACT ACTTCCCTAT TGTTGGGCCA
GTACCAATAC GTGATGAGTT TTGCGAACGC TTTGCGGGTT ATCGCAAGCG TGCCGCGACA
CCTATTCCTC AAACAGGCCC TTATTATCGC GGCCTTTACG TGAGTGTGGG ATACGGCTCT
CGCGGTTTAG CCTACACGCC CTTAGCTACA GAATCCCTTT GCCACAGCAT ATTTGGCGAG
CTACAGCCCA TTGCTACCGA AACCCTGCTG CACCTGCACC CCGCCCGCTT TCTTTTTAGG
GATCTGACAC GCAACCGCAT TTAA
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| Protein sequence | MTKKLEHEYI AHTERPALTW DEQGQPYSTE YDDVYYSTTD ALAETRFVFL DKNNLAARWP
HLTHQQTFTV CETGFGAGLN FLATWQLWRS TRPSGRMHFI SFEKHPLNSA QIAKALNRWP
QFAALSEQLC ALYPPSSAPG FHHITLDEGQ VQLTLYFGDA KTGLEQLVLA HGAINKIENR
SSCIGDKQQL VDAWYFDGFT PAKNPSIWQP CIFTLAAELS KSTTTFATFT SARSVRDAIE
NAGFKWQKVP GFGLKREMLF GTFEQHPFAQ VDPNKAPTTA HRSYRKRNGV QHSWHLQTAN
SEHQPPKTAI VIGGGLAGAH AAHALALRGV NVTLLERAPN LANGASSNLQ GLVYTRLSLS
GNPLSRFNMA AQLYADRFYH SHNFYTTCGE ASGVLHLATS NAIEKQLRNI GEQHASTDPN
PIFNWVEQQD TEQAVGVSTS TGGLFIRNSG WLNPVQLCHA LTNHPRITKL FNSDAAQLQQ
DAHGQWFALT NDGHKLASAD ITVICTARDA KHLAQTAYLP MRNIRGQVSH LSSHGLSQRL
HASVCGAGYI APAQSGIHCA GASFNLHENT LDLREEDHQF NIDNLASMSK SLTFNPPLTT
LDGKVGFRAT TPDYFPIVGP VPIRDEFCER FAGYRKRAAT PIPQTGPYYR GLYVSVGYGS
RGLAYTPLAT ESLCHSIFGE LQPIATETLL HLHPARFLFR DLTRNRI
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