Gene Cla_0621 details

Gene Information

• Locus tag: Cla_0621
• Symbol: mnmC
• ID: 7410687
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter lari RM2100
• Kingdom: Bacteria
• Replicon accession: NC_012039
• Strand: +
• Start bp: 592603
• End bp: 594441
• Gene Length: 1839 bp
• Protein Length: 612 aa
• Translation table: 11
• GC content: 27%
• IMG OID: 643717752
• Product: 5-methylaminomethyl-2-thiouridine methyltransferase
• Protein accession: YP_002575201
• Protein GI: 222823627
• COG category: [S] Function unknown
• COG ID: [COG4121] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 42
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAG CAAATATCAT CATTAAAAAC AATGCGCCTT TTTCTTTAGA TTTTGATGAT 
TATTATTTTA ATTCCAGTGA TGGTTTAAGC GAGAGTGAAT TTATCTACAC TAATGCTTTT 
GAATTTCAAA CAAAACAAAC TATCATTGCA GAGCTTGGTT TTGGTATAGG TTTAAATTTT 
TTTCTTACTT TAAAGCGCTT TATAAAAGAA AAAAAAGAAA ATCAAAGACT ATTTTATCTT 
AGTTTTGAAA ATTTTTATAT AGAAAAAGAT AAATTAAGAC AAATCTATAA AAATCTTGGT 
TTTTATGAGG AATTTAAAGA GCTTTTAGAG CAGTTTTTAA AATTTTATCC CCCATGTAAA 
GATGGAGTTT ATAGGTTTTA TTTTCAAGAT TGTTTTTTAG ATTTGGTATT TGGTAATGCT 
AAAGAAAAGT TGCAAAATTT AGATTTTAAA GCTGATATTT GGTATTTAGA TGGTTTTGCT 
CCATCTAAAA ATCAAGAGAT GTTTGATGAG GACATTGTAA GTAAAGTTGC TAAAAATTCA 
AAAATAAATA CCAAGATTTT AACCTTTTCT TCTGCAAGTA TTTTAAAAAA AGCTTTAATT 
GTTAATAATT TTCAGGTGCA AAAGATCAAA GGTTTTAGAA AAAGAGAAAT GATACAGGCT 
ATTTTTAATG GCCTTGAGTT TGAAGATAAA TTTGCTTATT TTAACACTCC AAGTTTAAAA 
AAAGAGATAC AAAAAATAGC CATCATAGGA GCAGGTATAG CTGGAGCTAG TATAGCTTAT 
GAACTTTCTT TAAGAAATGT CCAAGTGGAT GTTTTTGAAA AAGAAAATTC ATTAGGAAAA 
GGTACTTCTG GTAATATTAA TGGAATTTTG AGTTCTTTGA TTTTAAAACC TGATGTTTTA 
TTGGGTGAGT TTTCACAATA TGCTTTTTTG GAGGCTAGTA GATTTTATAG GCAAATTTTA 
AATTTAATTC CTCAAGGGGT TTATGAGTTT GCGCATAATG AGCTTATGCA AGAGCGTTTT 
GATAGTCAAA AAGATAATGT TTTATTTGAA ATTATTAACA ACCAGGCCTT TTTGAAAGAT 
GGAGCTTGTA TCAAACCCAA AGAGCTTGTA AAAACGCTTT TGCAAAAAAG CAAGGCTAAA 
GTATTTTTTG AGCATGAATT TAAAAATTAT TCTTATGAAA ATGAAAAATT TTCTTTGCAA 
TTTAATAATC AAAAAGCATT AAAAGATTAT GATGTATTAA TTTATGCTCA AGGTGCTGAT 
GTTAAGAATT TTTTAGATTA TAAACATATG AAATTAAGTA GCGTAAGAGG GCAATGTACT 
CATCTAAAGC CATTTTTAAA AAATACTCAT GCTCTATCTT CAAAAGGTTA TATCTGTCCT 
ATCAACGAAG AATTAAATTT ACAGCTTATT GGTGCAAGTT ATGATAGGCT TAATCAAGAA 
AAAAATCTTT TAAAAAACGA TGATTTGCAA AATATTGAAA ATATAAAAGA ATTTTTACAA 
GGTGAAAATT TAGAAGTTAT GGGCGGTAAA GTAGGATTTA GATCATATTC TAGTGATAGA 
TTTGCTATAG TAGGTCAAGC ATATGATGAA AAATTTTATT TGCAAAATTA TAAAGCACTT 
TTGTGGCATA AAAATAAAAG TCAAGTAGTG CCAAATGATT TTATTCCTTT GTATTTTTCT 
ATCGCTTATG GATCTAGGGC TTTTGCTAGT GCTATTATTG GAGCTAGAAT ACTTAGTGCA 
TTAATCTTTG ATGAGCCAAA AATAGAAAAA GATTTTTTAC ATGCTACTCA TCCTGCAAGG 
TTTTTAATTA GAATGCTAAA AAAGGGAAAA GTTTTATAG 

 

Protein sequence

MKKANIIIKN NAPFSLDFDD YYFNSSDGLS ESEFIYTNAF EFQTKQTIIA ELGFGIGLNF 
FLTLKRFIKE KKENQRLFYL SFENFYIEKD KLRQIYKNLG FYEEFKELLE QFLKFYPPCK 
DGVYRFYFQD CFLDLVFGNA KEKLQNLDFK ADIWYLDGFA PSKNQEMFDE DIVSKVAKNS 
KINTKILTFS SASILKKALI VNNFQVQKIK GFRKREMIQA IFNGLEFEDK FAYFNTPSLK 
KEIQKIAIIG AGIAGASIAY ELSLRNVQVD VFEKENSLGK GTSGNINGIL SSLILKPDVL 
LGEFSQYAFL EASRFYRQIL NLIPQGVYEF AHNELMQERF DSQKDNVLFE IINNQAFLKD 
GACIKPKELV KTLLQKSKAK VFFEHEFKNY SYENEKFSLQ FNNQKALKDY DVLIYAQGAD 
VKNFLDYKHM KLSSVRGQCT HLKPFLKNTH ALSSKGYICP INEELNLQLI GASYDRLNQE 
KNLLKNDDLQ NIENIKEFLQ GENLEVMGGK VGFRSYSSDR FAIVGQAYDE KFYLQNYKAL 
LWHKNKSQVV PNDFIPLYFS IAYGSRAFAS AIIGARILSA LIFDEPKIEK DFLHATHPAR 
FLIRMLKKGK VL