177 homologs were found in PanDaTox collection
for query gene SeSA_A2608 on replicon NC_011094
Organism: Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001509  ECD_02249  hypothetical protein  79.58 
 
 
668 aa  1090    Escherichia coli BL21(DE3)  Bacteria  normal  0.425785  n/a   
 
 
-
 
CP001637  EcDH1_1332  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  79.73 
 
 
668 aa  1092    Escherichia coli DH1  Bacteria  normal  0.602375  n/a   
 
 
-
 
NC_009801  EcE24377A_2619  5-methylaminomethyl-2-thiouridine methyltransferase  80.18 
 
 
668 aa  1098    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2608  5-methylaminomethyl-2-thiouridine methyltransferase  100 
 
 
666 aa  1377    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1358  5-methylaminomethyl-2-thiouridine methyltransferase  62.07 
 
 
672 aa  826    Dickeya zeae Ech1591  Bacteria  normal  0.0608182  n/a   
 
 
-
 
NC_011353  ECH74115_3465  5-methylaminomethyl-2-thiouridine methyltransferase  79.28 
 
 
668 aa  1087    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2732  5-methylaminomethyl-2-thiouridine methyltransferase  98.8 
 
 
666 aa  1362    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2586  5-methylaminomethyl-2-thiouridine methyltransferase  60.6 
 
 
675 aa  790    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E2702  5-methylaminomethyl-2-thiouridine methyltransferase  79.43 
 
 
668 aa  1091    Shigella boydii CDC 3083-94  Bacteria  normal  0.673186  n/a   
 
 
-
 
NC_009800  EcHS_A2475  5-methylaminomethyl-2-thiouridine methyltransferase  79.88 
 
 
668 aa  1093    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1070  5-methylaminomethyl-2-thiouridine methyltransferase  52.18 
 
 
680 aa  701    Aliivibrio salmonicida LFI1238  Bacteria  normal  0.388206  n/a   
 
 
-
 
NC_010468  EcolC_1328  5-methylaminomethyl-2-thiouridine methyltransferase  79.88 
 
 
668 aa  1093    Escherichia coli ATCC 8739  Bacteria  normal  0.831924  normal 
 
 
-
 
NC_013421  Pecwa_1458  5-methylaminomethyl-2-thiouridine methyltransferase  60.12 
 
 
675 aa  813    Pectobacterium wasabiae WPP163  Bacteria  normal  0.622829  n/a   
 
 
-
 
NC_011149  SeAg_B2519  5-methylaminomethyl-2-thiouridine methyltransferase  98.65 
 
 
666 aa  1360    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A0372  5-methylaminomethyl-2-thiouridine methyltransferase  60.44 
 
 
689 aa  818    Yersinia pestis Angola  Bacteria  hitchhiker  0.000353518  normal 
 
 
-
 
NC_012917  PC1_2806  5-methylaminomethyl-2-thiouridine methyltransferase  60.27 
 
 
675 aa  813    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.641074  n/a   
 
 
-
 
NC_012892  B21_02209  hypothetical protein  79.58 
 
 
668 aa  1090    Escherichia coli BL21  Bacteria  normal  0.334228  n/a   
 
 
-
 
NC_009708  YpsIP31758_1410  5-methylaminomethyl-2-thiouridine methyltransferase  60.29 
 
 
689 aa  816    Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000203784  n/a   
 
 
-
 
NC_010498  EcSMS35_2481  5-methylaminomethyl-2-thiouridine methyltransferase  79.13 
 
 
668 aa  1085    Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2621  5-methylaminomethyl-2-thiouridine methyltransferase  97.9 
 
 
666 aa  1329    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.00000350397 
 
 
-
 
NC_009436  Ent638_2872  5-methylaminomethyl-2-thiouridine methyltransferase  75.68 
 
 
666 aa  1029    Enterobacter sp. 638  Bacteria  normal  0.715577  normal  0.0703666 
 
 
-
 
NC_013456  VEA_002869  5-methylaminomethyl-2-thiouridine-forming enzyme MnmC  52.54 
 
 
672 aa  699    Vibrio sp. Ex25  Bacteria  hitchhiker  0.00103068  n/a   
 
 
-
 
NC_009457  VC0395_A1694  5-methylaminomethyl-2-thiouridine methyltransferase  53.29 
 
 
674 aa  694    Vibrio cholerae O395  Bacteria  hitchhiker  0.00252388  n/a   
 
 
-
 
NC_011080  SNSL254_A2568  5-methylaminomethyl-2-thiouridine methyltransferase  98.5 
 
 
666 aa  1358    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.580805  normal 
 
 
-
 
NC_009783  VIBHAR_03106  5-methylaminomethyl-2-thiouridine methyltransferase  52.25 
 
 
672 aa  707    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_3369  5-methylaminomethyl-2-thiouridine methyltransferase  63.65 
 
 
673 aa  845    Serratia proteamaculans 568  Bacteria  decreased coverage  0.00235092  normal 
 
 
-
 
NC_010465  YPK_1519  5-methylaminomethyl-2-thiouridine methyltransferase  60.44 
 
 
689 aa  818    Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0252518  n/a   
 
 
-
 
NC_008309  HS_0664  5-methylaminomethyl-2-thiouridine methyltransferase  42.54 
 
 
676 aa  565  1e-160  Haemophilus somnus 129PT  Bacteria  normal  0.0436264  n/a   
 
 
-
 
NC_008709  Ping_1996  fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  41.37 
 
 
690 aa  553  1e-156  Psychromonas ingrahamii 37  Bacteria  normal  0.155036  normal  0.387333 
 
 
-
 
NC_008228  Patl_3384  hypothetical protein  39.12 
 
 
705 aa  469  1.0000000000000001e-131  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3230  5-methylaminomethyl-2-thiouridine methyltransferase  42.17 
 
 
657 aa  459  9.999999999999999e-129  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_34940  5-methylaminomethyl-2-thiouridine methyltransferase  42.08 
 
 
653 aa  436  1e-121  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1343  5-methylaminomethyl-2-thiouridine methyltransferase  39.49 
 
 
654 aa  432  1e-120  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1751  5-methylaminomethyl-2-thiouridine methyltransferase  39.64 
 
 
654 aa  424  1e-117  Pseudomonas putida KT2440  Bacteria  normal  0.266449  normal 
 
 
-
 
NC_007492  Pfl01_4098  5-methylaminomethyl-2-thiouridine methyltransferase  40.03 
 
 
659 aa  425  1e-117  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3963  5-methylaminomethyl-2-thiouridine methyltransferase  39.49 
 
 
654 aa  423  1e-117  Pseudomonas putida F1  Bacteria  normal  0.94523  normal  0.0279642 
 
 
-
 
NC_004578  PSPTO_1639  oxidoreductase, FAD-binding protein  39.4 
 
 
660 aa  421  1e-116  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.562541  n/a   
 
 
-
 
NC_007005  Psyr_3742  5-methylaminomethyl-2-thiouridine methyltransferase  39.11 
 
 
665 aa  417  9.999999999999999e-116  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  decreased coverage  0.0063824 
 
 
-
 
NC_003910  CPS_3808  hypothetical protein  36.72 
 
 
682 aa  414  1e-114  Colwellia psychrerythraea 34H  Bacteria  normal  0.424966  n/a   
 
 
-
 
NC_009656  PSPA7_1671  5-methylaminomethyl-2-thiouridine methyltransferase  41.7 
 
 
654 aa  412  1e-114  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_007963  Csal_0704  hypothetical protein  39.47 
 
 
699 aa  413  1e-114  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_19400  5-methylaminomethyl-2-thiouridine methyltransferase  40.9 
 
 
654 aa  413  1e-114  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0825831  normal 
 
 
-
 
NC_010501  PputW619_1359  5-methylaminomethyl-2-thiouridine methyltransferase  37.91 
 
 
657 aa  402  9.999999999999999e-111  Pseudomonas putida W619  Bacteria  normal  0.490609  normal  0.307096 
 
 
-
 
NC_007947  Mfla_1390  hypothetical protein  38.24 
 
 
622 aa  387  1e-106  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.909333 
 
 
-
 
NC_011901  Tgr7_1861  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  39.01 
 
 
661 aa  384  1e-105  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01191  fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  35.18 
 
 
741 aa  382  1e-104  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2850  5-methylaminomethyl-2-thiouridine methyltransferase  38.43 
 
 
644 aa  372  1e-102  Dechloromonas aromatica RCB  Bacteria  normal  0.413253  normal  0.437245 
 
 
-
 
NC_010682  Rpic_1871  5-methylaminomethyl-2-thiouridine methyltransferase  37.43 
 
 
672 aa  375  1e-102  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0302238 
 
 
-
 
NC_006368  lpp1489  hypothetical protein  32.99 
 
 
666 aa  369  1e-100  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1494  hypothetical protein  33.13 
 
 
666 aa  367  1e-100  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_003295  RSc1709  5-methylaminomethyl-2-thiouridine methyltransferase  37.2 
 
 
657 aa  364  2e-99  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0318232 
 
 
-
 
NC_008322  Shewmr7_1486  FAD dependent oxidoreductase  35.53 
 
 
646 aa  358  1.9999999999999998e-97  Shewanella sp. MR-7  Bacteria  normal  0.193166  normal 
 
 
-
 
NC_009665  Shew185_2764  FAD dependent oxidoreductase  35.52 
 
 
685 aa  357  5e-97  Shewanella baltica OS185  Bacteria  hitchhiker  0.00507569  n/a   
 
 
-
 
NC_007347  Reut_A1378  5-methylaminomethyl-2-thiouridine methyltransferase  36.54 
 
 
668 aa  355  1e-96  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2155  glycine/D-amino acid oxidase (deaminating)-like protein  41.58 
 
 
604 aa  354  2.9999999999999997e-96  Shewanella amazonensis SB2B  Bacteria  normal  0.195632  normal 
 
 
-
 
NC_008577  Shewana3_1474  FAD dependent oxidoreductase  35.22 
 
 
640 aa  353  5.9999999999999994e-96  Shewanella sp. ANA-3  Bacteria  normal  0.123359  normal  0.492 
 
 
-
 
NC_008321  Shewmr4_1421  FAD dependent oxidoreductase  34.7 
 
 
642 aa  353  7e-96  Shewanella sp. MR-4  Bacteria  normal  0.0305521  normal 
 
 
-
 
NC_012856  Rpic12D_1538  5-methylaminomethyl-2-thiouridine methyltransferase  36.01 
 
 
672 aa  353  8e-96  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0998844 
 
 
-
 
NC_009438  Sputcn32_2446  FAD dependent oxidoreductase  35.23 
 
 
680 aa  350  5e-95  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000288925  n/a   
 
 
-
 
NC_009052  Sbal_2747  FAD dependent oxidoreductase  34.78 
 
 
713 aa  349  9e-95  Shewanella baltica OS155  Bacteria  hitchhiker  0.00546324  n/a   
 
 
-
 
NC_011662  Tmz1t_1956  5-methylaminomethyl-2-thiouridine methyltransferase  38.21 
 
 
644 aa  349  1e-94  Thauera sp. MZ1T  Bacteria  normal  0.243551  n/a   
 
 
-
 
NC_004347  SO_3073  hypothetical protein  34.98 
 
 
643 aa  348  2e-94  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2841  FAD dependent oxidoreductase  34.49 
 
 
708 aa  345  1e-93  Shewanella baltica OS195  Bacteria  unclonable  0.0000153917  decreased coverage  0.000123138 
 
 
-
 
NC_009654  Mmwyl1_3401  hypothetical protein  33.85 
 
 
674 aa  345  2e-93  Marinomonas sp. MWYL1  Bacteria  normal  0.473665  normal 
 
 
-
 
NC_011663  Sbal223_1612  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  34.64 
 
 
708 aa  344  2.9999999999999997e-93  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000812918  normal 
 
 
-
 
NC_007973  Rmet_1887  5-methylaminomethyl-2-thiouridine methyltransferase  35.95 
 
 
672 aa  341  2e-92  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3932  5-methylaminomethyl-2-thiouridine methyltransferase  35.55 
 
 
656 aa  330  5.0000000000000004e-89  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4505  5-methylaminomethyl-2-thiouridine methyltransferase  35.12 
 
 
656 aa  328  2.0000000000000001e-88  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1390  FAD dependent oxidoreductase  33.63 
 
 
697 aa  328  2.0000000000000001e-88  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2411  FAD dependent oxidoreductase  35.13 
 
 
686 aa  322  9.999999999999999e-87  Shewanella loihica PV-4  Bacteria  normal  0.82841  normal 
 
 
-
 
NC_009901  Spea_1605  FAD dependent oxidoreductase  35.27 
 
 
641 aa  320  7e-86  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00154209  n/a   
 
 
-
 
NC_010622  Bphy_3066  5-methylaminomethyl-2-thiouridine methyltransferase  35.07 
 
 
655 aa  317  6e-85  Burkholderia phymatum STM815  Bacteria  normal  normal  0.16811 
 
 
-
 
NC_008740  Maqu_1170  hypothetical protein  33.93 
 
 
631 aa  314  2.9999999999999996e-84  Marinobacter aquaeolei VT8  Bacteria  normal  0.285143  n/a   
 
 
-
 
NC_007520  Tcr_0130  hypothetical protein  33.63 
 
 
674 aa  313  6.999999999999999e-84  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.000346728  n/a   
 
 
-
 
NC_007614  Nmul_A1927  hypothetical protein  35.43 
 
 
617 aa  305  1.0000000000000001e-81  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.224364  n/a   
 
 
-
 
NC_010506  Swoo_3009  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  33.61 
 
 
696 aa  304  4.0000000000000003e-81  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1481  FAD dependent oxidoreductase  40.14 
 
 
754 aa  303  6.000000000000001e-81  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00000425578  n/a   
 
 
-
 
NC_007969  Pcryo_1977  hypothetical protein  32 
 
 
697 aa  300  6e-80  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2377  hypothetical protein  34.77 
 
 
667 aa  296  6e-79  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.954774 
 
 
-
 
NC_007651  BTH_I0003  5-methylaminomethyl-2-thiouridine methyltransferase  34.18 
 
 
657 aa  295  1e-78  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3396  5-methylaminomethyl-2-thiouridine methyltransferase  33.98 
 
 
708 aa  295  1e-78  Burkholderia mallei SAVP1  Bacteria  normal  0.145892  n/a   
 
 
-
 
NC_009074  BURPS668_0003  5-methylaminomethyl-2-thiouridine methyltransferase  33.98 
 
 
708 aa  294  4e-78  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0217  5-methylaminomethyl-2-thiouridine methyltransferase  34.12 
 
 
660 aa  293  5e-78  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1471  hypothetical protein  34.14 
 
 
707 aa  293  5e-78  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA2914  5-methylaminomethyl-2-thiouridine methyltransferase  34.12 
 
 
660 aa  293  6e-78  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1628  5-methylaminomethyl-2-thiouridine methyltransferase  34.12 
 
 
711 aa  293  8e-78  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0003  5-methylaminomethyl-2-thiouridine methyltransferase  34.12 
 
 
711 aa  293  8e-78  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2973  5-methylaminomethyl-2-thiouridine methyltransferase  34.12 
 
 
711 aa  293  8e-78  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_1701  hypothetical protein  32.19 
 
 
696 aa  290  8e-77  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1643  FAD dependent oxidoreductase  39.81 
 
 
712 aa  286  8e-76  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.0028636  normal 
 
 
-
 
NC_013422  Hneap_0743  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  34.23 
 
 
668 aa  285  2.0000000000000002e-75  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1641  5-methylaminomethyl-2-thiouridine methyltransferase  34.95 
 
 
616 aa  278  2e-73  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.168869  normal 
 
 
-
 
NC_010084  Bmul_0067  5-methylaminomethyl-2-thiouridine methyltransferase  32.18 
 
 
657 aa  272  1e-71  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_1989  hypothetical protein  30.09 
 
 
739 aa  271  4e-71  Psychrobacter sp. PRwf-1  Bacteria  normal  decreased coverage  0.000136918 
 
 
-
 
NC_009707  JJD26997_0457  5-methylaminomethyl-2-thiouridine methyltransferase  30.13 
 
 
613 aa  264  3e-69  Campylobacter jejuni subsp. doylei 269.97  Bacteria  unclonable  0.000000000895922  n/a   
 
 
-
 
NC_003912  CJE1404  5-methylaminomethyl-2-thiouridine methyltransferase  30.1 
 
 
613 aa  261  3e-68  Campylobacter jejuni RM1221  Bacteria  normal  0.628111  n/a   
 
 
-
 
NC_008825  Mpe_A1964  hypothetical protein  32.89 
 
 
653 aa  261  3e-68  Methylibium petroleiphilum PM1  Bacteria  normal  0.117707  normal 
 
 
-
 
NC_008787  CJJ81176_1284  5-methylaminomethyl-2-thiouridine methyltransferase  30 
 
 
613 aa  259  1e-67  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  hitchhiker  0.000566158  n/a   
 
 
-
 
NC_009802  CCC13826_0496  5-methylaminomethyl-2-thiouridine methyltransferase  28.44 
 
 
621 aa  249  2e-64  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_2424  hypothetical protein  32.49 
 
 
637 aa  231  3e-59  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>