| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2155 |
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| Symbol | |
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| ID | 4604405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2604195 |
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| End bp | 2606009 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639781540 |
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| Product | glycine/D-amino acid oxidase (deaminating)-like protein |
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| Protein accession | YP_928030 |
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| Protein GI | 119775290 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.195632 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAATTT CGCGACATCG AGTAAATTTT TTTAACCCCA TGCCCGAGTT TTTTGCCATC
GATATGGCCA TGCCATTATC ACTGCCCCTG CCTGAAGGCC CCTGTGTTGT GCTGTTTGAG
GCGCTGCCTG AACCACCGCT TTGGCAGTGG CTGCTCGCTG CGGCGCAGGT GAATTCTGCT
TATCCAGAAA CAAATGCTGC CTATGCCAGC AACGCTTCAA TCACCAGCAT ACAGCATACG
AGCAAAAAGC CATTACAGAT CATCATGCTG CTAAAAGATG AAGCTGAGCT TAACGCCCTG
GCTATGGATG CCAGCCACCC GCTCTCGCCT TTTGCCATGG CCGCGAGCCA CATTAAAGGC
GGACAAAGGT TTCATCTTGA TGACAACTGC TGGCTGGACT TTTACCTTTG TGAACCAAAC
AAAGCTGCCA CACTCGCTAC CTTTGATAAG GCCAGTATCG ATGTGCTCAT CTGCCCCAAG
GGCGAATTTG AGCAGGCAGC GCTTGAGCTT GCACACCAAG GCAGCATCCT GATTGGTGAT
ACCAAGCCAG ACATGCCAGC AGCGCTTCCC ATTAAGCCGC CCTTCAAACC AAGAGATATC
AGCATTGTCG GCGCTGGCGT GGCCGGGGCA AGCCTTGCAC TGTCGCTGCT TCGCCGTGGC
CACAAGGTGA CACTTTACTG CGCCGATGCC GCCCCCGGCA TTGGTGCTTC CGGCAATCGG
CAGGGTGCCA TCTATCCGCT GCTGACGCCA GAGGACGACC ATCTGACCCG GCTGTTTGTA
CCGGCATTTT TGTATGCTAA ACGCTTTGTC GAGTCGCTGG CACACCACCC CCTGCCCTTT
GATTTTTGCG GCGTACTGCA AACCGGCCAT GATGAACGCG CCACTGAACG CATTGAAAAA
CTGTTGAGTA AAACCTGGCC CAAACAAGTG GCGGTCAGGG TTGATGCCGA TGAGGCAAAT
CACATCGCCG GCGTCGCCAT CGATAAAGGC GGTATTTATT ACCCCCAAGG CGGCTGGGTT
TCACCGGCCA AGCTGTGTGA AGCAGCCATT GAAGAAGCCA AAACTATGGG CCTTGAGTGC
CATTTCGATG TGAACATCAC ATCCATAACG CGCGCTGATG AGGGCTGGCG ACTGAACACT
CAGACAGGCG AGATAGACGC CCATGAATTG GTGCTGGCTA CCGGCCACAG GATCACTGAA
CTTGCACAAA CCAAGTCGCT GCAGCTGGCG CCATTTCGCG GTCAGGTGAG CCATGTGCCC
ACCCGGGGTA AGCTTGAGCA GCTTAAAACC GTTCTCTGTG CACACGGTTA TTTCACTCCG
CGCGACGCTA GCAGCGGTAG CCACTGCATG GGCGCAAGTT ATGTGCGCGG TGATACTTCA
GTTGAGTATC GCGAGCAGGA GCAGCAGGAA AACCTGCACA AGATGCAGGA AAGTTACCCA
GGCAAGGATT GGGTAGAGTA TTTGGATATC AGTGAAGGCA GCGCCCGCGC CGGTATTCGA
ATGGTGAGCC GCGATCACCT GCCGATGGCG GGCGCCGCGC CGGATGTGGC GGCAATTCAG
ACACAATATC AGGCCATTGG CCACGGCCCC AAGGGAGCCC AGTACTGGCA AACCCACGCT
GCGCCTGTGC ATCCGGGGCT TTATATCTTC TCAGGCCTTG GCTCACGGGG ATTATCCAGC
GGCCCGCTGA TTGCCGAATG TCTGGCTGAC AGCCTCTCAG GCACACTGCC TGTGCTGGAT
GGCGACGTGA TGGAAGCCTT AAACCCCAAT CGAATGTGGC TTAGAAAGCT TAAAAAAGGC
AAGGCACTGG ACTGA
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| Protein sequence | MPISRHRVNF FNPMPEFFAI DMAMPLSLPL PEGPCVVLFE ALPEPPLWQW LLAAAQVNSA
YPETNAAYAS NASITSIQHT SKKPLQIIML LKDEAELNAL AMDASHPLSP FAMAASHIKG
GQRFHLDDNC WLDFYLCEPN KAATLATFDK ASIDVLICPK GEFEQAALEL AHQGSILIGD
TKPDMPAALP IKPPFKPRDI SIVGAGVAGA SLALSLLRRG HKVTLYCADA APGIGASGNR
QGAIYPLLTP EDDHLTRLFV PAFLYAKRFV ESLAHHPLPF DFCGVLQTGH DERATERIEK
LLSKTWPKQV AVRVDADEAN HIAGVAIDKG GIYYPQGGWV SPAKLCEAAI EEAKTMGLEC
HFDVNITSIT RADEGWRLNT QTGEIDAHEL VLATGHRITE LAQTKSLQLA PFRGQVSHVP
TRGKLEQLKT VLCAHGYFTP RDASSGSHCM GASYVRGDTS VEYREQEQQE NLHKMQESYP
GKDWVEYLDI SEGSARAGIR MVSRDHLPMA GAAPDVAAIQ TQYQAIGHGP KGAQYWQTHA
APVHPGLYIF SGLGSRGLSS GPLIAECLAD SLSGTLPVLD GDVMEALNPN RMWLRKLKKG
KALD
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