| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_1671 |
|---|
| Symbol | mnmC |
|---|
| ID | 5354015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | - |
|---|
| Start bp | 1714104 |
|---|
| End bp | 1716068 |
|---|
| Gene Length | 1965 bp |
|---|
| Protein Length | 654 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640810724 |
|---|
| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
|---|
| Protein accession | YP_001347055 |
|---|
| Protein GI | 152987245 |
|---|
| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.86051 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGACT TCCAGCATGC CCAGCTCGAC TGGGACGAAA ACGGCCAGCC GCTGTCCCGC
GTCTTCGGCG ACGTGTATTT CTCCCGGCAT TCGGGACTCG ACGAGACACG CCACGTGTTC
CTCGCCACCA ACCGCCTCGC CGAGCGCTTC GCCGCGCTGG GCGATGGCGA GGCGCTGTGC
ATCGGCGAGA CCGGCTTCGG CACCGGGCTG AACTTCCTTT GCGCCTGGCA ACTGTTCGAG
CGGGTGGCAC CGCCCGGCGC GCGCCTGGAG TTCGTCAGCG TGGAGAAATT CCCCCTCGCC
GCCGCCGACC TGCGCCGCGC CCTGGCCCTG TGGCCGGAAC TGGCGCCCTG GAGCGAGCCC
CTGCTGGGTC AGTATCTCGC CCTGCACCCG GGCTTTCAGC GCCTGGCGTT CGCCGGCGGC
CGGGTCGGCC TGACCCTGCT GCTGGGCGAT GCCCTGGAAT GCCTGCCGCA GCTTGACGCG
CGGATCGACG CCTGGTTCCT CGACGGCTTC GCCCCGGCGA AGAACCCGGA CATGTGGTCG
CCCGCGCTGT TCGCCGAACT GGCGCGGCTG TCGGCGCCGC AGGCGACCCT GGGCACCTTC
ACCAGCGCCG GTTTCGTCCG CCGCGGGCTG ATCGAGGCCG GCTTCGCCAT GCAACGGGTA
CCGGGCTACG GGCAGAAGCG CGAGATGCTC GGCGGCACCT ACCAAGGGCC GCCGGCGAGT
GCCGGCAAGC CCTGGTACGC ACGCCCCGCG CCCCATGCCG GACGTCGCGC GGCCCTGGTG
GTCGGCGGCG GCCTGGCCGG CTGCGCCAGC GCCGCCAGCC TCGCCGCGCG CGGCTGGCAG
GTGACCCTGA TCGAGCGCCA TCCCGGCCTC GCCCGGGAGG CCTCGGGCAA CCCCCAGGGC
GTGCTCTACC TGAAACTCTC GGCCCATGGC ACGCCGCTGT CGCGCCTGGT ACTCAGCGGC
TTCGGCCATA CCCGCCGGCT GCTCGAACGC CTGCGGCGCG GCCACGACTG GGACGCCTGC
GGCGTACTGC AACTGGCCTT CGACGCCAAG GAAGCACAAC GCCAGGCGCA ACTGGCCGCA
GCCTTCCCCG CCGACCTCCT GCACGGCCTG GACCGCGAGC AGGCCGAGCG CCTCGCCGGT
GTCGCCCTGC CCGCCGGCGG CCTGTTCTAT CCCGAGGCCG GCTGGGTCCA TCCGCCCGCC
CTCTGCCAGG CCCTGGCCAC CACGCCCGGG ATCACCCTGC TGAGCGGCCG GGCGGTACGC
TTGCGCCGCG AGGGAGACGA CTGGTGCGCC TACGCCGGCG ACGAATGCCT GGCCCGCGCG
CCACTCGCGA TCCTCGCCAC CGCCGCCGAC ATCCGCGACT TCCCGCCCGC CGCCGAGCTA
CCGCTGAAGC GCATCCGCGG ACAGGTCACC CGCCTGCCGG CCACCGCGCA GAGCCGGGCG
CTGCGCACCG TGGTCTGCGC CGAGGGCTAT GTCGCTCCAC CGCGTGGCGA CGAACACACC
CTCGGCGCCA GCTTCGACTT CAAGAGCGAA GACCTGGCGC CGACCCTCGC CGAACACCAG
GGCAACCTCG AACTGCTGCG GGAAATATCC CCCGACCTGT TGCAGCGCCT GGGCGCCGAC
GACCTGCCGC TGGAGCGCCT GGAAGGCCGC GCGGCATTCC GCTGCACCAG CCCCGACTAC
CTGCCCCTGG TAGGCCCGCT GGCCGAGCGC GCGGCCTTCG ACGAGGCCTA CGCGGTGCTC
GCCCGCGACG CCCGCCAGGT GCCGGAGCGT GCCTGCCCCT GGCTGCCAGG CCTGTACCTG
AACAGCGGCC ACGGCTCGCG CGGGCTGATC AGCGCGCCGC TGTCCGGCGA ACTGCTGGCG
GCGTGGATCT GCGGCGAGCC GCTGCCGCTG CCGCGCGCGG TGGGCGAGGC CTGCCACCCG
AACCGCTTCC TGCTGCGCGA CCTGGTGCGC GGGCAGCGCG GCTGA
|
|---|
| Protein sequence | MSDFQHAQLD WDENGQPLSR VFGDVYFSRH SGLDETRHVF LATNRLAERF AALGDGEALC
IGETGFGTGL NFLCAWQLFE RVAPPGARLE FVSVEKFPLA AADLRRALAL WPELAPWSEP
LLGQYLALHP GFQRLAFAGG RVGLTLLLGD ALECLPQLDA RIDAWFLDGF APAKNPDMWS
PALFAELARL SAPQATLGTF TSAGFVRRGL IEAGFAMQRV PGYGQKREML GGTYQGPPAS
AGKPWYARPA PHAGRRAALV VGGGLAGCAS AASLAARGWQ VTLIERHPGL AREASGNPQG
VLYLKLSAHG TPLSRLVLSG FGHTRRLLER LRRGHDWDAC GVLQLAFDAK EAQRQAQLAA
AFPADLLHGL DREQAERLAG VALPAGGLFY PEAGWVHPPA LCQALATTPG ITLLSGRAVR
LRREGDDWCA YAGDECLARA PLAILATAAD IRDFPPAAEL PLKRIRGQVT RLPATAQSRA
LRTVVCAEGY VAPPRGDEHT LGASFDFKSE DLAPTLAEHQ GNLELLREIS PDLLQRLGAD
DLPLERLEGR AAFRCTSPDY LPLVGPLAER AAFDEAYAVL ARDARQVPER ACPWLPGLYL
NSGHGSRGLI SAPLSGELLA AWICGEPLPL PRAVGEACHP NRFLLRDLVR GQRG
|
|---|
| |