Gene Avin_34940 details

Gene Information

• Locus tag: Avin_34940
• Symbol: mnmC
• ID: 7762389
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 3564404
• End bp: 3566365
• Gene Length: 1962 bp
• Protein Length: 653 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 643806360
• Product: 5-methylaminomethyl-2-thiouridine methyltransferase
• Protein accession: YP_002800618
• Protein GI: 226945545
• COG category: [S] Function unknown
• COG ID: [COG4121] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCGACC ATCCCCACGC CCAGCTCGAC TGGGACGAGC AAGGCCAGCC GCTGTCGCGC 
GGTTTCGGCG ACGTGTATTT CTCCCGTGCC TCGGGGCTGG AGGAGACCCG CTACGTGTTC 
CTCGGCCACA ACGGACTGCC GCTGCGCTTC GCCGCTCTGC CGGCCGGCGG GCGGTTGAGC 
ATCGGCGAAA CCGGCTTCGG CACCGGGCTG AACTTCCTCT GCGCCTGGCA ACTGTTCGAG 
CGCACGGCCC CGGCCGACGC CCGCTTGCAC TTCGTCAGCG TCGAGAAATA CCCCCTGACC 
CGCGCCGACC TGCAGCGGGC CCTGGCCCTC TGGCCGGAGC TGGCGCCTTG GGCCGAGGCC 
CTGCTGGAGC AGTACGTCGC CGTACACCCG GGCTTCCAGC GCCTGGTCTT CGCCGGCGGC 
CGGGTGGTGC TGACCCTGCT GGTCGGCGAC GTGCTGGAGC GTCTGCCGGA ACTGGACGCG 
CGCATCGACG CTTGGTTCCT CGACGGCTTC GCGCCGGCGA AGAACCCGCA GATGTGGACG 
CCCGAACTGT TCGCCGAACT GGCCCGGCTG TCCGCTCCCG GCGCCAGCCT GGCCACCTTC 
ACCAGCGCCG GCCTGGTGCG CCGCGGGCTG CTCGGAGCGG GCTTCGCCAT GCAGCGGGTC 
AAGGGGTTCG GCCAGAAGCG CGAGATGCTC GCCGGACGTT TCGAAGGAGC CGTGCCGGAT 
GCCGCCAAAC CCTGGTTCGC CCGCCCGCCG CGTCCCGCCG GCACCCGCGA GGCGCTGGTG 
ATCGGCGCCG GCCTGGCCGG CTGCGCCGCG GCGGCGAGCC TCGCCCGGCG CGGCTGGCGG 
GTGACCCTGC TGGAGCGCCG CGACGGGGTC GCCGAGGAAA CCTCGGGCAA CCCGCAGGGC 
GTGCTCTACC TCAAGCTGTC GGCCCACGGC ACGGCGCTCT CGCGACTGAT CGTCGCCGGC 
TTCGGCTTCA CCCGCCGGCT GCTGCAGCGC CTCGAAGCGG GTCATGACTG GTCTCCCTGC 
GGCGTGCTGC AACTGGCCTT CGACGCCAGG GAAGCGGCGC GCCAGGCCGA ACTGGCGGCG 
GCCTTCCCCG GCGACCTGCT GCACAACCTG AGCCGCGCGC AAGCCGAGGC CCTGGCCGGG 
GTCGCCCTGG ACAGCGGCGG GCTGTTCTAC CCCGAGGCCG GCTGGGTGCA TCCGCCGGCG 
CTCTGCGCAC AGCTCGCCGA CCATCCGAAC ATCCGCCTGC TGAGCCACCG GGAAGTCCTG 
GAGTTGCGCC GCGAGAACGG CCAATGGTGC GCCCGGAGCG GCGACCGATC GCTTGCCCGG 
GCGCCGGTCG CGGTGCTCTG CGGCGCGGCG GACATCGCCC GCTTCCCCGA GACCGCCGGA 
CTGCCGCTCA AGCGCATCCG CGGGCAGATC AGCCGCCTGC CGGCGACCGC CGCCAGCAGC 
CACCTGAAGA CCGTGCTCTG CGCCGAGGGC TACGTCGCCC CGCCGCGCGA CGGCGAACAC 
ACCTTGGGCG CCAGCTTCCG TTTCGAGGCC AGCGAACTGG CGCTGACCGT CGAGGAACAT 
GCGGAGAACC TGCAACTGTT GCGGGAGATC TCCGCCGACC TAGCCGGGCG GCTGCAACTC 
GAGCGCCTCG ATCCGGCGGC TCTCGACGGA CGCGCGGGCT TTCGCTGCAC CAGCCCGGAC 
TACCTGCCGA TCGTCGGCCC CCTGGCCGAC GCCGCAGCCT TCGCCGAAGC CTACGCCGTG 
CTCGGCAAGG ACGCCCGGCA GGTGCCGCAG CGTCCCTGTC CCTGGCTGGA AGGCCTGTAC 
GTCAGCAGCG GCCACGGCTC GCGCGGCCTG CTCAGCGCAC CGCTGGCCGG GGAACTGCTG 
GCCGCCTGGC TGGACGACGA GCCGCTGCCG GTGCCGAGGG CGGTGGCGGA GGCCTGCCAT 
CCCAACCGGT TCGGGTTGCG GAGGTTGATC CGGGGGAAGT GA 

 

Protein sequence

MTDHPHAQLD WDEQGQPLSR GFGDVYFSRA SGLEETRYVF LGHNGLPLRF AALPAGGRLS 
IGETGFGTGL NFLCAWQLFE RTAPADARLH FVSVEKYPLT RADLQRALAL WPELAPWAEA 
LLEQYVAVHP GFQRLVFAGG RVVLTLLVGD VLERLPELDA RIDAWFLDGF APAKNPQMWT 
PELFAELARL SAPGASLATF TSAGLVRRGL LGAGFAMQRV KGFGQKREML AGRFEGAVPD 
AAKPWFARPP RPAGTREALV IGAGLAGCAA AASLARRGWR VTLLERRDGV AEETSGNPQG 
VLYLKLSAHG TALSRLIVAG FGFTRRLLQR LEAGHDWSPC GVLQLAFDAR EAARQAELAA 
AFPGDLLHNL SRAQAEALAG VALDSGGLFY PEAGWVHPPA LCAQLADHPN IRLLSHREVL 
ELRRENGQWC ARSGDRSLAR APVAVLCGAA DIARFPETAG LPLKRIRGQI SRLPATAASS 
HLKTVLCAEG YVAPPRDGEH TLGASFRFEA SELALTVEEH AENLQLLREI SADLAGRLQL 
ERLDPAALDG RAGFRCTSPD YLPIVGPLAD AAAFAEAYAV LGKDARQVPQ RPCPWLEGLY 
VSSGHGSRGL LSAPLAGELL AAWLDDEPLP VPRAVAEACH PNRFGLRRLI RGK