Gene Pecwa_1458 details

Gene Information

• Locus tag: Pecwa_1458
• Symbol: mnmC
• ID: 8529849
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: -
• Start bp: 1580117
• End bp: 1582144
• Gene Length: 2028 bp
• Protein Length: 675 aa
• Translation table: 11
• GC content: 57%
• Product: 5-methylaminomethyl-2-thiouridine methyltransferase
• Protein accession: YP_003258864
• Protein GI: 261820758

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.622829
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCGAACC TCCCCATCCA ACACGCGTCG TTAAGTTGGA ACACTCAGGG TACACCTGTA 
TCGCAACAGT TTGATGACGT CTATTTTTCG AATCAGGATG GGTTAGCAGA AACCCGTTAT 
GTGTTTTTAC AGGGTAATCA GCTTTCTGAA CGCTTCACTA CGCACCCGCG TACAAACTGC 
GTGATAGCGG AGACTGGCTT TGGCACCGGC CTGAATTTTC TCACGCTGTG GCAAGCCTTT 
GCTCACTTTC GTCAACAGCA GCCGCAGGCA ACACTACGAC ACTTGCATTT CATCAGCTTC 
GAGAAATTCC CCCTGCGCCG GCACGATCTG GCGGCTGCAC ACGCACAGTG GCCGGAGCTA 
GCAGAATTCG CAGATGAATT ACGCCAGCAA TGGCCGTTAG CGCTACCGGG CTGTCACCGT 
CTGATTCTGG CGCAAGGCAG CATCACGCTC GATTTATGGT TTGGTGACGT TAATGTCTTG 
CTGCCAGAGC TGGATGACAC TCAAAACCAT CAGGTTGACG CCTGGTTTCT GGACGGCTTT 
GCGCCCTCTA AAAATCCCGA TATGTGGACG GAGAATCTGT TTCAGACGAT GGCGCGCCTG 
TGTCGTAAAG GAGGCACATT CGCTACCTTT ACCGCCGCAG GCTTTGTGCG TCGCGGCCTG 
CAACAGGCAG GTTTTCACGT TAGTAAAGTC AAAGGATTTG GGCAAAAGCG CGAGATGCTT 
AGCGGCATGC TGCCCGATGC ACTTCCCGTC CCCTCGCCGA CACCGTGGTA CGCGCGCCCT 
GCTGCCTGCA CGACTGACGA TATTGCGATT ATCGGCGGCG GTATCGCCAG CGTGCTTACG 
GCACTGGCTC TGCAACGGCG CGGCGCAAAC GTCACGCTCT ACTGCGCGGA GGCACAGCCT 
GCCACTGGCG CATCCGGCAA TCGTCAGGGC GCGCTGTATC CTCTGCTGAA TAACCGGCAC 
GACGCCGTAT CCCGATTTTT CTCGCTCGCC TTTGACTTCG CCCACCGTAG CTACACGGCG 
CTGGCGCAGC AAGGTCTGGA ATTTGAACAT CAGTGGTGCG GCGTCAGCCA GCTTGCCTGG 
GATGAAAAGA GCACGCGTAA GATCGAGCAG ATTCTGCAAG GGGAATGGCC GGAAGAACTG 
GTCGTTAGCG TGGATGCGCA GCAATTGGAA AAGCAGAGCG GCCTGAATCC CGGCGTAAAT 
GGCATCACCT ACCCCGACGG CGGCTGGCTG TGTCCGGCAG AACTGACAGC CGCTGCGTTG 
AAGCTGGCAC AGCAACACGG CCTGTCGGTA CAGATGAATG CCGCCGTTTC AGCACTGGAA 
AAAACGGACA AAGGCTGGGC GCTCACTCTA CGCACGGGTC AGCAAGTCAG CCATGCGGTC 
GTGGTGCTGG CAAACGGTCA CCAGATTACC GACTGGTCAC AAACCCGCCA CTTACCCGGC 
TACGCCGTGC GTGGGCAGGT CAGCCATATT CCGACTACCC CTGTGCTGGG GCAGCTAAAG 
CAGGTGCTGT GCTACGACGG CTACCTGACG CCAGCGAGCC CGCAGCATCA AACACACTGC 
ATCGGGGCAA GCTACCTACG GGGCGAAGCC CATTGTGATT ATCGGGAAGA AGAACAGCAG 
GAGAACCGGC AGCGCCTGCT GAATTGCTTG CCCAACGCAG ATTGGACCAA GACAGTCGAT 
GTCAGCGGCG GGCAGGCTCG TCAAGGTGTC CGTTGTGCGT TGCGCGATCA TCTGCCGCTC 
TTAGGCGCGG TGCCAGATTA TGATCAAACG CTGGCAGAGT ATGAAGATCG ACTGCATCCA 
CAGCACCGCA CAGACACAGT GCCAAGCGCA CCTTATTGGC AGGATCTGTT TATTATCGGT 
GCATTAGGAT CGCGCGGGCT TTGTTCTGCC CCACTTGCGG CAGAAATTTT AGCTTCGCAG 
ATGTACGGCG AACCTCTACC GCTGGATCGC GATACGCTAT CCGCGCTAAA TCCAAATCGC 
TTCTGGATAA GGAAACTGCT GAAAGGCAAA CCCGTGACGC AGGATTAA 

 

Protein sequence

MANLPIQHAS LSWNTQGTPV SQQFDDVYFS NQDGLAETRY VFLQGNQLSE RFTTHPRTNC 
VIAETGFGTG LNFLTLWQAF AHFRQQQPQA TLRHLHFISF EKFPLRRHDL AAAHAQWPEL 
AEFADELRQQ WPLALPGCHR LILAQGSITL DLWFGDVNVL LPELDDTQNH QVDAWFLDGF 
APSKNPDMWT ENLFQTMARL CRKGGTFATF TAAGFVRRGL QQAGFHVSKV KGFGQKREML 
SGMLPDALPV PSPTPWYARP AACTTDDIAI IGGGIASVLT ALALQRRGAN VTLYCAEAQP 
ATGASGNRQG ALYPLLNNRH DAVSRFFSLA FDFAHRSYTA LAQQGLEFEH QWCGVSQLAW 
DEKSTRKIEQ ILQGEWPEEL VVSVDAQQLE KQSGLNPGVN GITYPDGGWL CPAELTAAAL 
KLAQQHGLSV QMNAAVSALE KTDKGWALTL RTGQQVSHAV VVLANGHQIT DWSQTRHLPG 
YAVRGQVSHI PTTPVLGQLK QVLCYDGYLT PASPQHQTHC IGASYLRGEA HCDYREEEQQ 
ENRQRLLNCL PNADWTKTVD VSGGQARQGV RCALRDHLPL LGAVPDYDQT LAEYEDRLHP 
QHRTDTVPSA PYWQDLFIIG ALGSRGLCSA PLAAEILASQ MYGEPLPLDR DTLSALNPNR 
FWIRKLLKGK PVTQD