| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1641 |
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| Symbol | mnmC |
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| ID | 3673026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1724603 |
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| End bp | 1726453 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637710328 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_315399 |
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| Protein GI | 161899033 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.168869 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAGAA CCATCGTCCC CGCCCGACTC GAATTCCGCG ACGGCGTCCC GTATTCCGCG
GCCTACGGCG ACGTTTACCA TTCTGCCGAC GGCGGCCCCG GCCAGGCCCG CCATGTCTTT
CTTGCCGGCT GCGGCCTGCC CGCCGCCTGG GCCGGCCGCG ACAGCTTCGT CGTGCTCGAG
ACCGGTTTCG GCACCGGGCT GAATTTTCTC GCGACCTGGG CGGCGTGGCG TGACGACCCC
GCCCGGCCGT CGCGGCTGCA TTTCCTGTCG GTCGAAAAAC ACCCGTTCCA GGCGGCCGAC
CTCGCCCGCA TTCACGCGCA ATGGCCCGAA TTCGCTGAGC TGTCCGAGGT GCTGCGCGGC
AATTGGCCCA TGCTTCTGCC GGGATTCCAC CGCGTCGCGC TCGACGGCGG CCGCGTGCAG
CTCACGCTGA TGCTCGGCGA GGCGGCGGAA TGCCTGCACG AGGTCGAGGC GCGCGTGGAC
GCGTTCTATC TCGACGGCTT CGCCCCCGAC CGCAACACGG ATCTGTGGCA ACCCCAATTA
TTTGAAACCC TGGCGTGGCT CGCGAACCCG GGGGCAACGG CCGCGACCTA CACCGTCGCG
GCGCCGGTGT TACAGGGGCT GACCCAAGCC GGCTTCGCCT GCGAAAAACG TCGCGGCTAC
GGCCGCAAGC GTCATTGCAT GAGCGCGCGT TTCGCAGGCC GATCACGCGC GGAGGTGTCC
GCTGCCCCCC GGCATGTCGC GGTCATCGGC GGCGGCGTCG CGGGCGCGGC GGCAGCGCGC
GCGCTGGTCG ACCGCGGCGT GTCGGTAACG CTGCTCGAGC GCGCAACCGC GCCGGCCGAG
GGGGCTTCGG GCAATCCGGT CGCAGTGTTC CGGCCGCTGA TTTCGCGCGA CGACAACCGC
GCGACGCGCC TCACACGGGC GGCTTTCCTT CACGATCTGC GCGCGTGGGC CGCGCTCGGC
GAGTGCGTGC AATGGGCGCG TTGCGGCGTC CTGCACCTCG CGCGCGACGC GGCGACCGCC
GCGAAGCAGC AGCAGGCCTT GGCCGAGATT GCCCTCCCGG CCGATTACGC GCGCTGGGTG
GACTTGGGCG AGGCGCGCGA ACTCGCGCAC TGGTCCGTCG CCGCGCCCGG CACGTTCTAC
TCGGCGGCGG GCTGGGTCGT GCCCGGAAGC CTGTGCCGCG CCTGGCTCGA CCACCCCGGC
ATCGGCTTGC AGACCAATCG GGCGGTCGGG CGTCTCCAAG CGGTCTCGAA CGGCTGGCAG
ATCCTGGATC GCGAAGGCCA CGCGCTAGCC GAAGCCGACG CGGTCGTGCT CGCCAACGCA
CGCGACGCGT CGCGTCTCGC CCTCGGTCAA GCCTGGCCGC TCCACACTGT GCGCGGGCAG
GTCACGCAAC TGCCGGCGGG CAGCCTGCCG GAAATCGCCC GTGTGATCGC GCGCGAAGGC
TACGTCGCGC CGGGGGCCGC CGGGCCGCTG GTCGGCGCGA CTTACGAACA TCCTGAAGGG
TACAAGGAGA ACGACGACGA CACCGCGCCG CGCGCGGCGA GCGACGTCGC CAATCTCGCG
CGCCTCGAGG CCATTCTGCC CGGCGCTACT CAGCGATTCG TGTCGAATGA GGTGAGCGGC
CGCGCCTCGC TGCGCGCGAC CCTGCCGGAT CGCCTGCCGC TCGTCGGGGC AGTCGATGGA
CAACCGGGGT TGTATGTGGC GGCGGGTTAC GCCTCGCGCG GCGTCGTCTG GGCGGGGCTG
CTCGGGGAGG CGCTTGCCGA CCTGATCACC GGCCAGCCGC TGCCTTTGGA AGCCGAGTTG
ATGCGAGGAA TCGCGCCGGC GCGGTTTGCC GGCAACAGAA AGACGGCCTG A
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| Protein sequence | MLRTIVPARL EFRDGVPYSA AYGDVYHSAD GGPGQARHVF LAGCGLPAAW AGRDSFVVLE
TGFGTGLNFL ATWAAWRDDP ARPSRLHFLS VEKHPFQAAD LARIHAQWPE FAELSEVLRG
NWPMLLPGFH RVALDGGRVQ LTLMLGEAAE CLHEVEARVD AFYLDGFAPD RNTDLWQPQL
FETLAWLANP GATAATYTVA APVLQGLTQA GFACEKRRGY GRKRHCMSAR FAGRSRAEVS
AAPRHVAVIG GGVAGAAAAR ALVDRGVSVT LLERATAPAE GASGNPVAVF RPLISRDDNR
ATRLTRAAFL HDLRAWAALG ECVQWARCGV LHLARDAATA AKQQQALAEI ALPADYARWV
DLGEARELAH WSVAAPGTFY SAAGWVVPGS LCRAWLDHPG IGLQTNRAVG RLQAVSNGWQ
ILDREGHALA EADAVVLANA RDASRLALGQ AWPLHTVRGQ VTQLPAGSLP EIARVIAREG
YVAPGAAGPL VGATYEHPEG YKENDDDTAP RAASDVANLA RLEAILPGAT QRFVSNEVSG
RASLRATLPD RLPLVGAVDG QPGLYVAAGY ASRGVVWAGL LGEALADLIT GQPLPLEAEL
MRGIAPARFA GNRKTA
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