| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E2702 |
|---|
| Symbol | mnmC |
|---|
| ID | 6268422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 2503132 |
|---|
| End bp | 2505138 |
|---|
| Gene Length | 2007 bp |
|---|
| Protein Length | 668 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641726666 |
|---|
| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
|---|
| Protein accession | YP_001881146 |
|---|
| Protein GI | 187730661 |
|---|
| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.673186 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAACACT ACTCCATACA ACCTGCCAAC CTCGAATTTA ATGCTGAGGG TACACCTGTT
TCCCGAGATT TTGACGATGT CTATTTTTCC AACGATAACG GGCTGGAAGA GACGCGTTAT
GTTTTTCTGG GAGGCAACCA ATTAGAGGTA CGCTTTCCTG AGCATCCACA TCCTCTGTTT
GTGGTAGCAG AGAGCGGCTT CGGCACCGGA TTAAACTTCC TGACGCTATG GCAGGCATTT
GATCAGTTTC GCGAAGCGCA TCCGCAAGCG CAATTACAAC GCTTACATTT CATTAGTTTT
GAGAAATTTC CCCTCACCCG TGCGGATTTA GCCTTAGCGC ATCAACACTG GCCGGAACTG
GCTCCGTGGG CAGAACAACT TCAGGCGCAG TGGCCAATGC CCTTGCCCGG TTGCCATCGT
TTATTGCTCG ATGAAGGCCG CGTGACGCTG GATTTATGGT TTGGCGATAT TAACGAACTG
ACCAGCCAAC TGGACGATTC GCTAAATCAA AAAGTAGATG CCTGGTTTCT GGACGGCTTT
GCGCCAGCGA AAAACCCGGA TATGTGGACG CAAAATCTGT TTAACGCCAT GGCAAGGTTG
GCGCGTCCGG GCGGCACGCT GGCGACATTT ACGTCTGCCG GTTTTGTCCG CCGCGGTTTG
CAGGACGCCG GATTCACGAT GCAAAAACGT AAGGGCTTTG GGCGCAAACG GGAAATGCTT
TGCGGGGTGA TGGAACAGAC ATTACCGCTC CCCTGCTCCG CGCCGTGGTT TAACCGCACG
GGCAGCAGCA AACGGGAAGC GGCGATTATC GGCGGTGGTA TTGCCTGCGC GTTGTTGTCG
CTGGCGCTAT TACGGCGCGG CTGGCAGGTA ACGCTTTATT GCGCGGATGA GGCCCCCGCA
CTGGGTGCTT CCGGCAATCG CCAGGGGGCG CTGTATCCGT TATTAAGCAA ACACGATGAG
GCGCTAAACC GCTTTTTCTC TAATGCGTTT ACTTTTGCTC GTCGGTTTTA CGACCAATTA
CCCGTTAAAT TTGATCATGA CTGGTGCGGC GTCACGCAGT TAGGCTGGGA TGAGAAAAGC
CAGCATAAAA TCACACAGAT GTTGTCAATG GATTTACCCG CAGAACTGGC TGTAGCCGTT
GAGGCAAATG CGGTTGAACA AATTACGGGC GTTGCGACAA ATTGCAGCGG CATTACTTAT
CCGCAAGGTG GTTGGCTGTG CCCAGCAGAA CTGACCCGTA ATGTGCTGGA ACTGGCGCAA
CAGCAGGGTT TGCAGATTTA TTATCAATAT CAGTTACAGA ATTTATCCCG TAAGGATGAC
TGTTGGTTGT TGAATTTTGC AGGAGATCAG CAAGCAACAC ACAGCGTAGT GGTACTGGCG
AACGGGCATC AAATCAGCCG ATTCAGCCAA ACGTCGACTC TCCCGGTGTA TTCGGTTGCC
GGGCAGGTCA GCCATATTCC GACAACGCCG GAATTGGCAG AGCTGAAGCA GGTGCTGTGC
TATGACGGTT ATCTCACGCC ACAAAATCCG GCGAATCAAC ATCATTGTAT TGGTGCCAGT
TATCATCGCG GCAGCGAAGA TACGGCGTAC AGTGAGGACG ATCAGCAGCA GAATCGCCAG
CGGTTGATTG ATTGTTTCCC GCAGGCACAG TGGGCAAAAG AGGTTGATGT CAGTGATAAA
GAGGCGCGCT GCGGTGTGCG TTGTGCCACC CGCGATCATC TGCCAATGGT AGGCAATGTT
CCCGATTATG AGGCAACACT CGTGGAATAT GCGTCGTTGG CGGAGCAGAA AGATGAGGCG
GTAAGCGCGC CGGTTTTTGA CGATCTCTTT ATGTTTGCGG CTTTAGGTTC TCGCGGTTTG
TGTTCTGCCC CGCTGTGTGC CGAGATTCTG GCGGCGCAGA TGAGCGACGA ACCGATTCCG
ATGGATGCCA GTACGCTGGC GGCGTTAAAC CCGAATCGGT TATGGGTGCG GAAATTGTTG
AAGGGTAAAG CGGTTAAGGC GGGGTAA
|
|---|
| Protein sequence | MKHYSIQPAN LEFNAEGTPV SRDFDDVYFS NDNGLEETRY VFLGGNQLEV RFPEHPHPLF
VVAESGFGTG LNFLTLWQAF DQFREAHPQA QLQRLHFISF EKFPLTRADL ALAHQHWPEL
APWAEQLQAQ WPMPLPGCHR LLLDEGRVTL DLWFGDINEL TSQLDDSLNQ KVDAWFLDGF
APAKNPDMWT QNLFNAMARL ARPGGTLATF TSAGFVRRGL QDAGFTMQKR KGFGRKREML
CGVMEQTLPL PCSAPWFNRT GSSKREAAII GGGIACALLS LALLRRGWQV TLYCADEAPA
LGASGNRQGA LYPLLSKHDE ALNRFFSNAF TFARRFYDQL PVKFDHDWCG VTQLGWDEKS
QHKITQMLSM DLPAELAVAV EANAVEQITG VATNCSGITY PQGGWLCPAE LTRNVLELAQ
QQGLQIYYQY QLQNLSRKDD CWLLNFAGDQ QATHSVVVLA NGHQISRFSQ TSTLPVYSVA
GQVSHIPTTP ELAELKQVLC YDGYLTPQNP ANQHHCIGAS YHRGSEDTAY SEDDQQQNRQ
RLIDCFPQAQ WAKEVDVSDK EARCGVRCAT RDHLPMVGNV PDYEATLVEY ASLAEQKDEA
VSAPVFDDLF MFAALGSRGL CSAPLCAEIL AAQMSDEPIP MDASTLAALN PNRLWVRKLL
KGKAVKAG
|
|---|
| |