| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1694 |
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| Symbol | mnmC |
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| ID | 5136429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1820575 |
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| End bp | 1822599 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640533151 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_001217633 |
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| Protein GI | 147674806 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00252388 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTCATTA TGTCATCCAT TTCACACGCC CAGCTTGGCT GGAACGACGC AGGAACCCCC
GTCTCCGATC AATTTGACGA TGTTTATTTC TCTAACGTCA ATGGTCTGGC TGAGACGCGC
TATGTGTTCC TTGAGCAGAA TCATCTCCCA CAAAGATGGC ACAACGATGA CCAAAGACGA
TTTGTGATTG CAGAAACTGG CTTCGGTACT GGCCTGAATT TTCTGGCGGT GTGGCAAGCG
TTTGTCGCGT TTCGTGAAGC CAATCCCGAT GCCAAACTCA AAGAGCTGCA TTTCATCAGT
TTTGAAAAAT ACCCGCTCAG TAAAAGCGAT TTAATTCAAG CGCATCAAGC GTGGCCGGAG
CTGGCGCAAT TCGCACAAAA ACTGCATAAG CACTACCCGT TAGCCATTCC AGAATGCCAA
CGGATTGTGT TGGATGATGG GCTCATCACG CTCGATCTCT GGTTTGGCGA TATCAAAGAC
TGCCTGCCGA AAGTCGCAAC ACAAGAGCAA GGCTTAGTGG ATGCATGGTT CCTCGATGGT
TTTGCTCCCA GCAAAAACCC CGAGATGTGG AATCAAGGCC TGTTTGCAGG TATGGCGAAA
CTGGCGAAAC ATGGCTGTAC CTGCGCCACC TTTACTTCGG CTGGCTTTGT CCGCCGCGGC
TTGATTGACG CGGGTTTTGC GATGAAAAAG GTCAAAGGCT TTGGCACTAA GCGTGAAATG
ATCGCCGGCA GCCTGAGTGA AAAAGTACCT TACACCAATA TCGCACCCGA ATTTCGTTTT
GAGGCCACTC ACGGCCTACA AGAGGTGGCC ATCATCGGCG GTGGTATCGC CAGTGCCACG
CTAGCGACAA CCTTAGCCAG ACGCGGTGTT GCCGTCACGC TTTACTGCGC CGATGAGAAA
CCAGCGCAAG GTGCATCCGG TAACCGACAA GGCGCGGTCT ATCCGCTACT CAGTGGCGAT
CACAACGCGG TTTCACGAGT GTTTGCGCCT GCCTTTCTGT TTGCCCGCCA ATGGATTGAA
CAAGCGGCGG AGCAGATAAA CTTTGACCAC GATTGGTGCG GCGTGACTCA ATTAATGTGG
GATGAAAAAG CAACGGACAA ACTCAAGAGC ATGCTTGAGG GGGATTTCCC AACACAATTA
GTGCGTGGTT TATCCGCAGA GCAAACCAAT CAACAAGTCG GCGTGCCAGT GGATAAAGCC
AGTGTGCATT ATCCGCTCGG AGGCTGGCTC TGCCCAGCAG AGCTGACTCA AGGCTTAATC
CATCTTTTAG CGCAGCAGGG CAAGCTCACT GCGCATTATC AGACTCCGAT TGATGAATTG
ACTTGGCAGC CAGAGACTCA ACTGTGGCAA CTGCGCAGTG GCGACACACT CATGTCACAT
CAGTGTGTGG TGATTGCCAG TGGCCATCAA TTTGACAGCC TGTCACAAAC CGCAGAGTTA
CCACTTGGCA AAGTGAAAGG CCAAGTGAGC CACATCCCGA CCACAGAGAC GCTGAGCAAA
ATCAACAGCG TGCTCTGTTA CGATGGTTAT ATGACTCCGG TCAGCCAACA AAATGGGTAT
CACTGTATTG GCGCAAGTTA TGATCGCCAG CACCTTGATG CGACTTTTGA TCCGCAAGCA
CAACGCGAAA ATGCACAAAA GCTAATTCAC TGCTTGCCTG AGCAAACTTG GCCATTGGAA
GTGGATGTCG GCGGCAATCA ATCACGCCAA GGCGTGCGCT GTGTGAGTCG CGATCATCTG
CCTTTTGTCG GCAATGTCGG CGAATTTTCG AAAATCACCG AGCAATATCG CGATTTAGCT
CAGCAGCAAG AAGCCGAGCC AATCGCGCTC TATCCGCAAC TTTATGCGTT GGTCGGGCTT
GGCTCACGCG GTTTAAGTAG CGCGCCGCTG ATGGCAGAAC TTCTTGCTTC GCAAATGTGT
GGCGACCCCA TGCCACTAGG CGTAGATTTG CTCGAACAGT TACACCCTAG TCGGATGTGG
GTTCGAAAGC TGCGTAAAGG CAAAGCGCTC ACACAAAAAG TCTGA
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| Protein sequence | MFIMSSISHA QLGWNDAGTP VSDQFDDVYF SNVNGLAETR YVFLEQNHLP QRWHNDDQRR
FVIAETGFGT GLNFLAVWQA FVAFREANPD AKLKELHFIS FEKYPLSKSD LIQAHQAWPE
LAQFAQKLHK HYPLAIPECQ RIVLDDGLIT LDLWFGDIKD CLPKVATQEQ GLVDAWFLDG
FAPSKNPEMW NQGLFAGMAK LAKHGCTCAT FTSAGFVRRG LIDAGFAMKK VKGFGTKREM
IAGSLSEKVP YTNIAPEFRF EATHGLQEVA IIGGGIASAT LATTLARRGV AVTLYCADEK
PAQGASGNRQ GAVYPLLSGD HNAVSRVFAP AFLFARQWIE QAAEQINFDH DWCGVTQLMW
DEKATDKLKS MLEGDFPTQL VRGLSAEQTN QQVGVPVDKA SVHYPLGGWL CPAELTQGLI
HLLAQQGKLT AHYQTPIDEL TWQPETQLWQ LRSGDTLMSH QCVVIASGHQ FDSLSQTAEL
PLGKVKGQVS HIPTTETLSK INSVLCYDGY MTPVSQQNGY HCIGASYDRQ HLDATFDPQA
QRENAQKLIH CLPEQTWPLE VDVGGNQSRQ GVRCVSRDHL PFVGNVGEFS KITEQYRDLA
QQQEAEPIAL YPQLYALVGL GSRGLSSAPL MAELLASQMC GDPMPLGVDL LEQLHPSRMW
VRKLRKGKAL TQKV
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