| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1996 |
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| Symbol | |
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| ID | 4627202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 2426322 |
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| End bp | 2428394 |
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| Gene Length | 2073 bp |
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| Protein Length | 690 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 639797158 |
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| Product | fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme |
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| Protein accession | YP_943360 |
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| Protein GI | 119945680 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.155036 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.387333 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCTGACG CTAAATACAA GTTAATTAAG CATGCTCAAA TACACTGGTC TGATCAGTTA
GAGCCTTTTT CGAGTCTATT CGACGACATT TATTTCAACA CAGAGCAAGG AATTGATGAA
GCAAATTATG TGTTTTTTGA CGGAAATAAG TTAGGAAAAC GTTGGCTAGA TTATTCTGCG
CAGCACTTTT CAATAGCCGA AACGGGCTTT GGTACCGGTT TGAATTTTTT GCTTACCTGC
CAGAAATTTG CTGAATTTAT AAAATTAAAT CCGAATAATC CCCTAAAAAA ATTACATTTT
AGCAGTTTTG AAAAATATCC CTTAACTAAG CCGGATTTAA TTATTGCATT ACAGCAATGG
CCGCAATTAA CTGCCTTTAT TACCCCTCTA TTAGCGCAGT ACCCCATTGC ACTAAAGGGC
TGCCATCGTT TAGTATTAAA TGAGTTTAAT ATCACCCTCG ATTTATGGTT TGGTGATATA
GCAGATACGC TGCCTTCTTT ACACGTTTAT GATTGCGGAC TTTTTGACTG CTGGTATCTG
GACGGTTTTG CGCCCAGTAA AAATCCGGAA ATGTGGAATG ATGATCTGTT TCAATTAATC
AGTCAATCTT GTAAAAAAGA TGCCACCATC GCGACCTTTA CGGCGGCCAG TTTTGTACGC
AAAGGATTAA TTAAAGCGGG TTTTGAAATG GGAAAACAGA AAGGATATGA CAAAAAAAGA
GAGATGTTAA TCGGTCATAT AAGTACTGAA GCTCTGGCTG CGAACAAACT TAAACAACAT
GGGCAATATT ACCGCCCTGC AAAATCAGAA AATACTGCAC AAAAAAAAAC CGATGTTGCC
ATTATAGGTG GGGGTATTGC AAGTGCTTGT TTATCATTAG CCCTCATCAG GCGCGGTTAT
AAAGTCACCT TATACTGCAA AGAGTCCAGC CTGGCCTTTG GCGCATCGGG TAATCAGCAG
GCGGCTTTGT ACCCTCTTCT CAATGAACAA CACGATGCTT TAAGTCAATT TTTTGCCAAT
GCATTTTTAT ACAGCAGAAA TTATATTAAA CAAATAAATC AAACTCAGCC GGTTGATTAT
AGCTTTTCAG GCGTACTGCA ACTCTACTAC GATCCCAGCG CATCCAAAAA ACTGGACAAA
ATTTTACAAG CGGGCTTACC CCAAGAACTG GTTGAACAAT TAACAGAAAT TGAAACCGAT
AATATTGCCG GGATCTCCAT TGCACAAAAA TCATTACATT ACCCTTTAGG GGGATGGTTA
AGTCCCAAGC AACTTGTTGA AGCTATCGTC CGGCAAGCAA AAAATGAAGG CGACCTGAGC
GTACACTTAA ATCAAGAATT ATTAACCTTT GAGCAAAGCC CCTCTGACAA TCCGGCACTC
AATCCGGCAC AACCGATAAA CAGTTGGGAT TTACATTTTG CCAAGCACAG TATTCAACAT
TCACTGCTAG TGCTTGCAAC CGCCAATAAC ACCCTTAATT TTAAACAGTG CGAAGCGGTG
CCACTGTCTG CTGCCCGTGG TCAAGTCACT CATATTCCGA CCAACCATAA AATTAATCCA
TTACAGATAA CACTTTGTCA TGAAGGATAT TTAACCCCGG CGAATAATCA ACAACATTGT
ATGGGGGCAA CCTTCAAACG TCATGATCTT AACCAGGCAT TTTCTCAGCA AGAACAAGTC
GATAATAAAG ATAAATTAGA AAAATGTATC CCCGGAAAGA CCTGGACAGA GCAGATAGAC
ATAAACCACC CAAATGCACA TGTCGGTATT CGCTGTACAA CAAGGGACCA TTTCCCCTAC
GTGGGGGCCA TACCCGATTA TCAGGCAACT AAAATTCATT ATAAAAATGC CGCAAAAGAA
GTTAACCCGG TCAATGCCCC TTTTCATCCT AATTTATACC TGTTGACCGG ATTAGGCTCG
AGAGGTTTTT GCTCGGCACC TCTGTTAGCT GAAATGTTAG CCAGTCAGAT AAATAAAGAA
CCATTGCCCT TTGCAAAGGA AATCTTAAAT GCGATGCAGA TTAACAGGCA ATGGATAAAC
TACCTTAAGA AAGGAAAGCC GTTACATTAC TAG
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| Protein sequence | MSDAKYKLIK HAQIHWSDQL EPFSSLFDDI YFNTEQGIDE ANYVFFDGNK LGKRWLDYSA
QHFSIAETGF GTGLNFLLTC QKFAEFIKLN PNNPLKKLHF SSFEKYPLTK PDLIIALQQW
PQLTAFITPL LAQYPIALKG CHRLVLNEFN ITLDLWFGDI ADTLPSLHVY DCGLFDCWYL
DGFAPSKNPE MWNDDLFQLI SQSCKKDATI ATFTAASFVR KGLIKAGFEM GKQKGYDKKR
EMLIGHISTE ALAANKLKQH GQYYRPAKSE NTAQKKTDVA IIGGGIASAC LSLALIRRGY
KVTLYCKESS LAFGASGNQQ AALYPLLNEQ HDALSQFFAN AFLYSRNYIK QINQTQPVDY
SFSGVLQLYY DPSASKKLDK ILQAGLPQEL VEQLTEIETD NIAGISIAQK SLHYPLGGWL
SPKQLVEAIV RQAKNEGDLS VHLNQELLTF EQSPSDNPAL NPAQPINSWD LHFAKHSIQH
SLLVLATANN TLNFKQCEAV PLSAARGQVT HIPTNHKINP LQITLCHEGY LTPANNQQHC
MGATFKRHDL NQAFSQQEQV DNKDKLEKCI PGKTWTEQID INHPNAHVGI RCTTRDHFPY
VGAIPDYQAT KIHYKNAAKE VNPVNAPFHP NLYLLTGLGS RGFCSAPLLA EMLASQINKE
PLPFAKEILN AMQINRQWIN YLKKGKPLHY
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