| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1421 |
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| Symbol | |
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| ID | 4251999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 1657839 |
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| End bp | 1659767 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638118020 |
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| Product | FAD dependent oxidoreductase |
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| Protein accession | YP_733556 |
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| Protein GI | 113969763 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0305521 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGCAAT GGGGATTGGG CGATGGACTC GAGCTGCTCT CTCTACTACA ACACTGGCAA
ACGCAGACTC AGACTCAGGG CAACACACGA CTGTTAGTCA AAGTGTTTGA GCCTAATCCC
ATTAACGATT ACGAACTTAA ATTACTTTGG GATCAATCGC AAAGCTTAAT TTCCAAGTCT
CATTTACAAC CGATTGCCAA TGCCATCCTT AAGGCAAAAC CTGCGCGCAT TATAGGGTGC
CAGAGATTAA TCTTTGATGA CGGCCGTATC ACGGTCGATT TGCATTTTGG CGACCTACAC
ACAGCACTCA GTCAACTGCC CCACAGCGCT GATCATCCCA TTCAGCAATG GCTGGTTTTA
CCGCATTTGG CGGCGCAGCT TAATGGCAAG CAAGTCTGGC AAATGGCCCG TTTGAGCACC
GATGATGCCC AGCTGATTGG GGTCAATTTG GCTGAAACCC TGCAACAGCT TGCCCACAAG
AGTGGCTTTA GCACGCTTAA CGTCAGCCAA GATGCCTTGA ATGGTGATGC AAGTGATGCA
CTGCAAAGCC ATATTATCAC CGATGAGATT TTACTCCATG AGCGCAAACT GCTACGCCAG
CAAGCCGATA CCGCTCAGGC ATTTACCCCA AAACCTACAG CGCTCGCCAC TAAAGACCAT
CCCATTGCTA TCGTCGGTGG CGGACTGGCA TCGGCGAACC TAATGCTATC CCTTGCCGAA
CGAGGCCAAA GTAGCACATT GTTTTGTAAG GATAATGAGT TAGGCCAAGG CGCATCCGGC
AATCGCCAAG GGGCGATTTA CCCCCTGCTC ACGCCTGAAA ATGATGAGCT GAGTCGTTTT
TTCCAACAGG CATTTTTGTT CAGCCGCCGC CGCATCGAGG CGCTGAGCCA TGCGTCGATG
ATGGAGACAG AAGCCGCCCC TACTATTACC GCGATTTCCC ATGACTTTTG TGGGGTACTG
CAAACGGGTC ATGATGAGCG CAGCCAACAA CGGTTGGATA AAATCATCCA AAGTCAGGAC
TGGCCGGCGG AAATCGCCTA CGCCGTTGAT GCGAATGAAG CCAACGAGAT AGCTCAAATA
GGTATTGATA AGGCTGGATT TTTTTATCCC CTCGGGGGCT GGGTATGCCC ATTTGAATAC
GCCAAGGCTG CGGTAGATAA AGCCTCGCAG CTTGCCAATG TGCAATGCCA TTTCAATACC
GAGATCACCG AAATCGAGTG TGATGCAAAG GCTTGGTATC TCCACAGTCA AGGCCAGCGT
TTTGGACCAT TCCGCCAACT CGTGCTCGCC AATGGCGCGC AGCTCACCCA ATTTTCGGCC
AGTGAGCGAT TACAGATAAG CCCGTTTCGC GGCCAAGTGA GCCACGTCCC CGCCCAATTT
AAGCTGAGCC AACTGGCGAC AGTGTTATGC GCGAACGGTT ACCTCACACC GAGTCATCAA
GGCTTGCATT GCCTCGGCGC CAGTTATGTC AAAGCGGCGG AGCACCTCGA TTTTTGCCCA
CAGGAGCAAT GGGAAAACCT CGGAAAAATG CAAGAAAGCT ACCCCAACCA AGCCTGGGTT
GACGATATCG ACATCAGCGA CAATAGCGCC CGTGTCGGCG TGCGGATGGT GACGCGGGAT
CATTTCCCCA TGATGGGCTG TGCGCCCGAT GTGGCTGAAA TATTGGCGCG CTATGAACAG
CATCAACTCA ATCAGCAGCA GGCCGAACAA AGCAAGCATT ATTGGCAAAC GACCCCGGCT
CCGATCCTCG ATGGCCTTTA TATCCTAGGT GGCTTAGGGT CGCGGGGATT AAGCTCTGGC
CCCTTGGCGG CCGAATGTTT AGCGGCACAA TTAACCGGTG AGCCGCTGCC ACTAGATTGG
CCCACCTTAA ATAAACTCAA CCCAAATCGG ATGTGGCTAC GCAAATTACT AAAGGGTAAA
GCACTTTAG
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| Protein sequence | MGQWGLGDGL ELLSLLQHWQ TQTQTQGNTR LLVKVFEPNP INDYELKLLW DQSQSLISKS
HLQPIANAIL KAKPARIIGC QRLIFDDGRI TVDLHFGDLH TALSQLPHSA DHPIQQWLVL
PHLAAQLNGK QVWQMARLST DDAQLIGVNL AETLQQLAHK SGFSTLNVSQ DALNGDASDA
LQSHIITDEI LLHERKLLRQ QADTAQAFTP KPTALATKDH PIAIVGGGLA SANLMLSLAE
RGQSSTLFCK DNELGQGASG NRQGAIYPLL TPENDELSRF FQQAFLFSRR RIEALSHASM
METEAAPTIT AISHDFCGVL QTGHDERSQQ RLDKIIQSQD WPAEIAYAVD ANEANEIAQI
GIDKAGFFYP LGGWVCPFEY AKAAVDKASQ LANVQCHFNT EITEIECDAK AWYLHSQGQR
FGPFRQLVLA NGAQLTQFSA SERLQISPFR GQVSHVPAQF KLSQLATVLC ANGYLTPSHQ
GLHCLGASYV KAAEHLDFCP QEQWENLGKM QESYPNQAWV DDIDISDNSA RVGVRMVTRD
HFPMMGCAPD VAEILARYEQ HQLNQQQAEQ SKHYWQTTPA PILDGLYILG GLGSRGLSSG
PLAAECLAAQ LTGEPLPLDW PTLNKLNPNR MWLRKLLKGK AL
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