| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3932 |
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| Symbol | mnmC |
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| ID | 6282042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 4404148 |
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| End bp | 4406118 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642623519 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_001897543 |
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| Protein GI | 187925901 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATC CGCTAATCCC CGCCGTCCTC GTTTTTCGCG ACAACGGCAC GCCTTTTTCG
CCGCTTTACG ACGACATCTA TCACAGCGCC GTAGGCGGTC TCGAACAGGC TCGATACGTA
TTCCTGCGCG GCAATTCGTT GCCCGACCGG TGGCAGGGCC GCCGCATTTT CACGGTTCTG
GAGACCGGCT TCGGCATGGG CATCAATTTT CTGATGACCT GGGCCGCGTG GCGCGCGGAC
CCGTTGCGCT GCGAGCGGCT GCATTTCGTA TCCACCGAGA AGCATCCCTT TACCGTCGGC
GATTTACGCA AGGCGGTTGC AGCGACGATT TCCGATCCCG AGATTGCCGC CCTCGCGCAA
GCGCTCGCGA ACGCCTGGCC GACGCTCGTT CCCGGCACGC ACCGGCTTGA ATTCGATGAA
GGGCGCGTGG TGCTCACGCT GGTTTTCGGC GACGCGCAGG AGCGCTTACC GGCCTTGAGG
CTGCGCGCCG ATGCGTTTTA TCTCGACGGC TTCGCGCCCG CCAGGAATCC CGAGCTTTGG
ACCCCGATGA TTTTTAAGGC GCTCGCGCGG CTGGCAGGTG AGGGCGCCAC CTTCGCCACC
TGCAGCAGCG CCGGCGACAT CAAGCGCGCG CTGATTCAAT GCGGCTTCGA GTACCGCAAG
GTGGACGGCT TCGGCTGGAA ACGGGCGATG CTGGTCGGCC ATTTCGCGCC GCGCTGGCGC
GTGCGCCGTC ATGAGCCGCC GGCGCCGCTC GCGGTCGACG AAAGGCATGC GGTGGTGATC
GGCGCGGGGC TGGCGGGCTG CGCGGTGATC GAACGGCTCG CCGCGCGCGG CTGGCGCGTC
ACGTCGCTGG AGCGGCATGC TTCGGTGGCG CAGGAAGCGT CGGGCAATCC GGCCGGCGTG
TTCCATCCCA TGATTTCGCG CGACGACAGC ATCGCCTCGC GCGTTACGCG TGCCGGCTTT
CTGTATACGC TCAGGCGCTG GGCCGCGCTC GAACGGCTCG GTCACGCGCC GCTGCGCGGC
GGTCAAGGCT TGTTGCAAAT CGCCGCGGAC GAAAATGAGG CCCGCTCGAT CAGCGAAGCA
ATCGCTGCAT TCGGTTATCC GGGTGACTAC GTCACACCCG TCTCAGCAGC TGAAGCGCAG
CGGCTCGCCG GCATGCCGCT CGCACGCGGC GGATGGTTCT TTCCACACGG TGGCTGGATC
GACCCGGCGT CGCTGTGCGC GGCGCAGTGC GCCGCAGCCG GTCCGCTGCT TGAGCGCCGC
TTCGGTGTGG ACGTTGCGCG GATCGAGCGG TCCGGCGGTC AGTGGACTGT ATTCGACACC
TCGGGCGAGG CCATTGCGCG TGCGCCGGTG GTGATCGTCG CCAGCGCGCA CGATGCCGCG
CGCATCGCCG GTTTACAGCA TGCGCCGACT CGCAGCATTC GCGGCCAACT CACTTTGCTG
CCGCCCGGGG CCGTGCTGCC GCCGCTTCAG ATGCCGGTGA TCGGCGAGGG TTACGCCGTG
CCGCTGGCCG ACGGCGTCAC GCTCACCGGC GCCACATATG AGCTCGACGA CCCCGACACG
TCGCTGCGCG CGGACGGCCA CCTGGAAAAC CTGGAACGCG TCGCGCAGAT GCTGCCGGCC
TTTGCAAACG TCGCGGATCC GGCTCGATCG ACTGCGTTAA CCGGACGCGT CGCGTTCCGC
TGCGTTACCA GCGACCGCAT GCCGATGATC GGCCAACTCG CCGACGAAGC TCAGGCCGCG
CTCGACGCCC AGCGTCTGCG TGGCGCATGG CCGCTCGATC TGCCTCGCAC AGACGGCCTC
TATGGTGCTT TTGCGTATGG TTCGCGAGGT CTCGTCTGGG CGGCGCTCGG TGCGGAACTG
ATCGCCTCGC AACTTGAAGG CGAACCTTGG CCGCTCGAAC GGGATCTGGC GGAAGACATC
GACCCGGCGC GCTTCCTGTT GCGCGCACTG CGTCAGGGAG CGGTGAGTTA A
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| Protein sequence | MTDPLIPAVL VFRDNGTPFS PLYDDIYHSA VGGLEQARYV FLRGNSLPDR WQGRRIFTVL
ETGFGMGINF LMTWAAWRAD PLRCERLHFV STEKHPFTVG DLRKAVAATI SDPEIAALAQ
ALANAWPTLV PGTHRLEFDE GRVVLTLVFG DAQERLPALR LRADAFYLDG FAPARNPELW
TPMIFKALAR LAGEGATFAT CSSAGDIKRA LIQCGFEYRK VDGFGWKRAM LVGHFAPRWR
VRRHEPPAPL AVDERHAVVI GAGLAGCAVI ERLAARGWRV TSLERHASVA QEASGNPAGV
FHPMISRDDS IASRVTRAGF LYTLRRWAAL ERLGHAPLRG GQGLLQIAAD ENEARSISEA
IAAFGYPGDY VTPVSAAEAQ RLAGMPLARG GWFFPHGGWI DPASLCAAQC AAAGPLLERR
FGVDVARIER SGGQWTVFDT SGEAIARAPV VIVASAHDAA RIAGLQHAPT RSIRGQLTLL
PPGAVLPPLQ MPVIGEGYAV PLADGVTLTG ATYELDDPDT SLRADGHLEN LERVAQMLPA
FANVADPARS TALTGRVAFR CVTSDRMPMI GQLADEAQAA LDAQRLRGAW PLDLPRTDGL
YGAFAYGSRG LVWAALGAEL IASQLEGEPW PLERDLAEDI DPARFLLRAL RQGAVS
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