| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1359 |
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| Symbol | mnmC |
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| ID | 6110287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 1480170 |
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| End bp | 1482143 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641621133 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_001748233 |
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| Protein GI | 170720545 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.490609 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.307096 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCAT CCACCCTCCT TCAGCATGCC CAGATCGACT GGGACGACCA GGGCCGCCCC
CATTCGCGGC AATACGGCGA TGTGTACTTC GCCATCAACG AGGGCATTGC CGAAACCCAG
CATGTGTTCC TCGAACAAAC CCGCCTGCGC CAGCGCTTCG CCAACCTGGC CCCCCACGGC
TGCCTGGTGA TCGGCGAAAC CGGCTTTGGC ACCGGCATGA ATTTTTTCTG CGCCTGGCAG
CTGTTCGCCG AAACAGCCCA CGCCGACGCC CGCCTGCATT TCGTCAGCGT CGAGAAGTAC
CCCCTGGGCC ATGCCGACAT GGCCAGGGCT ATGCGCCTGT GGCCGGAGCT GGCTGCGTTC
ACCGAACCCT TTTTGCGCCA GTACGTCGCG GTGCACCAGG GCTTCCAGCA GTTCACCTTC
GACCAGGGCC GAATCACCCT TACCCTGTTG ATCGGCGATG TGCTGGAGCA GCTGCCGCAG
CTGGACGCGC GTATCGACGT GTGGTTCCTC GACGGTTTTG CCCCGGCGAA GAACCCCGAC
ATGTGGACAC CCGAGCTGTT CACGCAACTG GCCAGGCTGT CCCATGCCGG CACCGCACTT
GGCACCTTCA CCACCACCGG CTGGGTTCGC CGCAGCTTGA TCGAAGCCGG CTTCACCATG
AAGAAGGTGC CTGGCATCGG CAAGAAGTGG GAGGTGATGA GCGGTGAGTA CACCGGCCCG
CCCAACGCCC CCATGTCGGC GCCCTGGTAC GCGCGGCCAA CTGCGCCTGA AGGCCCGCGC
GAGGCCTTGG TGATCGGCGC AGGGCTCGCC GGCAGTGCCA GCGCTGCCAG CCTGGCCGCA
CGCGGCTGGC AGGTAACGGT ACTGGAGCGC CACGACGCAG CGGCCCGCGA AGCCTCCGGT
AACCCCCAGG GCGTGCTGTA CCTCAAGCTG TCCGCGCACG GCACGGCTTT GTCGCAGATG
ATTCTGTCCG GTTTCGGCTA TACACGGCGC CAGCTTGAAC TACTGCAGCG CGGCCAGGAC
TGGGATGCGT GCGGGGTTTT GCAACTGGCC TTCGACAGCA AGGAAGCCGA ACGCCAGGGC
AGGCTCGCTG ATGCCTTCGA GGGCAGCTTG CTGCGTGCCG TGCAGCGCAA TGAAGCCGAA
GCGATTGCCG GGGTCGGGCT GCCTGCCGGC GGGTTGTTCT ACACCGAAGG CGGCTGGGTG
CACCCACCGG CACTGTGCAA GGCTCAACTG CAGCACCCGA ACATTCGCCT GCTGGCTCAT
CACGATGTGC TCGCACTGCG CAAGGCCGAT GGCCTGTGGC AAGCCTGGGC CGGCGACCGG
CTGCTGGCCA GCGCGCCAAT GGTGGTGCTG GCCGGGGCAG CTGATGTGAA GCGTTTCGAG
CCTTGTGCGC AGCTGCCGCT CAAGCGCATT CGCGGGCAGA TCACCCGCCT GCCGGTGACT
GACGCCAGCC GGGCGCTGGC TACCGTGGTC TGCGCCGAGG GCTATGTGGC ACCGCCCAGG
GGTGAGGAGC ACACGCTGGG GGCCAGCTTT GACTTCCATA GTGATGACCT GACGCCGACC
GTGGCCGAGC ACCAGGGCAA CCTGGCCATG CTGGATGAAA TCTCCACCGA CCTGGCCCGG
CGCCTGGGTA CCGCAGCGCT TGCCCCTGAG CAGTTGCAGG GGCGCGCAGC ATTTCGCTGC
ACCAGCCCGG ATTATTTGCC GATTGTGGGG CCGGTTGCCG ACCCTGCAGC CTTTGCCGAG
GCCTATGCCG TACTGGCCAA GGACGCGCGG CAGGTGCCCG AGGTGCCCTG CCCCTGGCTG
GAGGGGCTGT ATGTGAACAG CGGGCATGGG TCGCGGGGGC TGATCACGGC GCCGCTTTCG
GGCGAGTTGA TTGCGGCGTG GGTCAGTGGC GAGCCGTTGC CGCTGCCGCG GGCGGTGGCT
GAGGCATGTC ATCCGAACCG GTTTGGCTTG CGCAGGTTGA TTCGGGGTAA ATGA
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| Protein sequence | MPASTLLQHA QIDWDDQGRP HSRQYGDVYF AINEGIAETQ HVFLEQTRLR QRFANLAPHG
CLVIGETGFG TGMNFFCAWQ LFAETAHADA RLHFVSVEKY PLGHADMARA MRLWPELAAF
TEPFLRQYVA VHQGFQQFTF DQGRITLTLL IGDVLEQLPQ LDARIDVWFL DGFAPAKNPD
MWTPELFTQL ARLSHAGTAL GTFTTTGWVR RSLIEAGFTM KKVPGIGKKW EVMSGEYTGP
PNAPMSAPWY ARPTAPEGPR EALVIGAGLA GSASAASLAA RGWQVTVLER HDAAAREASG
NPQGVLYLKL SAHGTALSQM ILSGFGYTRR QLELLQRGQD WDACGVLQLA FDSKEAERQG
RLADAFEGSL LRAVQRNEAE AIAGVGLPAG GLFYTEGGWV HPPALCKAQL QHPNIRLLAH
HDVLALRKAD GLWQAWAGDR LLASAPMVVL AGAADVKRFE PCAQLPLKRI RGQITRLPVT
DASRALATVV CAEGYVAPPR GEEHTLGASF DFHSDDLTPT VAEHQGNLAM LDEISTDLAR
RLGTAALAPE QLQGRAAFRC TSPDYLPIVG PVADPAAFAE AYAVLAKDAR QVPEVPCPWL
EGLYVNSGHG SRGLITAPLS GELIAAWVSG EPLPLPRAVA EACHPNRFGL RRLIRGK
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