| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1410 |
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| Symbol | mnmC |
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| ID | 5388284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 1648326 |
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| End bp | 1650395 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640864393 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_001400389 |
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| Protein GI | 153947507 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000000203784 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACCAAC GCCCAATCCA AACCGCAACA CTCAGCTGGA ATGAACAGGG TACACCTGTA
TCTGAACAGT TTGGTGACAT CTATTTTTCC AATGAAGATG GTCTGGAAGA GACTCACCAC
GTTTTTCTCA AAGGGAATGG GTTTCCTGCA CGCTTCGCTT CCCACCCGCA GCAAAGCTGT
ATTTTTGCTG AAACGGGTTT TGGCACTGGT TTAAACTTCC TGACATTATG GCGTGATTTT
GCCCTATTTA GGCAGCAATC GCCCAATGCT ACGCTTCGGC GGTTGCACTA CATTAGTTTT
GAAAAATATC CACTTCACGT CGCCGATCTA GCCTCAGCCC ATGCCCGTTG GCCGGAGTTA
GCCTCTTTCG CTGAACAACT GCGAGCGCAG TGGCCCCTAC CGCTGGCCGG TTGTCATCGT
ATTTTGCTGG CTGACGGCGC TATTACGTTG GATTTATGGT TTGGTGATGT CAATACCCTA
TTACCCACAT TGGACGATAG CCTGAATAAT CAGGTAGATG CCTGGTTCCT TGATGGTTTT
GCTCCCGCCA AGAATCCAGA TATGTGGAAT GAGCAGTTGT TCAATGCCAT GGCGCGAATG
ACCAGGCCGG GAGGCACTTT TTCAACCTTT ACCGCCGCCG GATTTGTGCG TCGTGGTTTG
CAGCAGGCAG GGTTTAACGT AACCAAAGTG AAAGGTTTCG GGCAAAAACG GGAAATGCTG
ACGGGCACCC TGCCACAACA GATTCATGCG CCCACGGCCC CTTGGTATCA TCGGCCTGCC
GCCACGCGCT GTGATGATAT TGCCATTATC GGTGGCGGGA TTGTCAGCGC CTTGACCGCA
CTGGCCTTAC AACGTCGCGG GGCGGTGGTC ACGCTCTACT GTGCTGACGC ACAGCCAGCA
CAGGGGGCAT CAGGCAACCG ACAAGGGGCA CTCTACCCGT TGCTCAATGG TAAAAATGAT
GCACTGGAAA CCTTTTTTAC CAGTGCCTTT ACCTTTGCCC GCCGTCAGTA CGACCAACTG
CTTGAGCAAG GGATCGCCTT TGACCATCAG TGGTGCGGTG TCAGCCAATT AGCGTTTGAT
GATAAGAGCC GTGGCAAAAT TGAGAAGATG CTGCATACAC AGTGGCCAGT TGAGTTTGCC
GAAGCGATGA GCCGTGAGCA ACTCAGTGAG TTGGCCGGGC TGGATTGCGC CCATGATGGC
ATACACTATC CTGCTGGCGG TTGGCTCTGC CCTTCTGACC TCACTCACGC ACTGATGATG
CTAGCGCAAC AACATGGCAT GACCTGCCAC TATCAACATG AACTGCAGCG ATTAAAACGC
ATTGATAACC AGTGGCAACT GACCTTTGGT CAATCACAAG CGGCTAAACA TCATGCCACC
GTCATTTTAG CAACTGGCCA CCGCTTACCT GAATGGGAAC AAACTCACCA TCTGCCCTTG
TCTGCGGTAC GTGGGCAGGT GTCACACATC CCGACCACCC CGGTGCTCAG CCAACTGCAA
CAGGTGTTGT GCTATGATGG TTACCTGACG CCAGTCAACC CAGCCAATCA GCATCATTGT
ATTGGTGCCA GTTATCAGCG CGGCGACATC GCGACTGATT TTCGCCTAAC CGAGCAGCAG
GAGAACCGTG AGCGTTTGCT ACGCTGTCTG CCACAAGTCA GTTGGCCGCA GCAGGTAGAT
GTCAGCGATA ATCAGGCTCG GTGTGGCGTT CGCTGCGCTA TCCGCGACCA TTTACCGATG
GTCGGTGCCG TGCCGGATTA TGCTGCAACA CTGGCTCAAT ATCAGGATCT GTCTCGTCGT
ATTCAGCATG GGGGTGAGAG CGAGGTAAAT GATATCGCTG TCGCGCCAGT CTGGCCTGAG
TTATTTATGG TCGGGGGGTT AGGCTCGCGT GGCTTATGCA GTGCACCATT GGTGGCCGAG
ATTCTGGCCG CGCAGATGTT CGGTGAACCA TTGCCGTTAG ATGCCAAAAC GCTGGCAGCA
TTGAATCCTA ACCGTTTTTG GATCAGAAAA TTATTGAAAG GCAGGCCGGT ACAAACTCGC
TCCCCGGCCA CCCAAGAGTC ATCAAGATGA
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| Protein sequence | MNQRPIQTAT LSWNEQGTPV SEQFGDIYFS NEDGLEETHH VFLKGNGFPA RFASHPQQSC
IFAETGFGTG LNFLTLWRDF ALFRQQSPNA TLRRLHYISF EKYPLHVADL ASAHARWPEL
ASFAEQLRAQ WPLPLAGCHR ILLADGAITL DLWFGDVNTL LPTLDDSLNN QVDAWFLDGF
APAKNPDMWN EQLFNAMARM TRPGGTFSTF TAAGFVRRGL QQAGFNVTKV KGFGQKREML
TGTLPQQIHA PTAPWYHRPA ATRCDDIAII GGGIVSALTA LALQRRGAVV TLYCADAQPA
QGASGNRQGA LYPLLNGKND ALETFFTSAF TFARRQYDQL LEQGIAFDHQ WCGVSQLAFD
DKSRGKIEKM LHTQWPVEFA EAMSREQLSE LAGLDCAHDG IHYPAGGWLC PSDLTHALMM
LAQQHGMTCH YQHELQRLKR IDNQWQLTFG QSQAAKHHAT VILATGHRLP EWEQTHHLPL
SAVRGQVSHI PTTPVLSQLQ QVLCYDGYLT PVNPANQHHC IGASYQRGDI ATDFRLTEQQ
ENRERLLRCL PQVSWPQQVD VSDNQARCGV RCAIRDHLPM VGAVPDYAAT LAQYQDLSRR
IQHGGESEVN DIAVAPVWPE LFMVGGLGSR GLCSAPLVAE ILAAQMFGEP LPLDAKTLAA
LNPNRFWIRK LLKGRPVQTR SPATQESSR
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