| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1861 |
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| Symbol | |
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| ID | 7315191 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | + |
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| Start bp | 1982656 |
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| End bp | 1984641 |
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| Gene Length | 1986 bp |
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| Protein Length | 661 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643616752 |
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| Product | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC |
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| Protein accession | YP_002513929 |
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| Protein GI | 220935030 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCATCCG CAACTGACAC AGGCGCCGGA TTCCAGCCCC TGGAGCCGGC GGTCCTGGAG
TTTCGCGACG GCACGCCCTG GTCGTCGCGC TACGGCGACG TGTACTTCAG CCACGGCCAC
GGCGCCGAGG AATCCCGCAC CGTGTTCCTT GAGGCCAACG GCCTGCCCGA ACGCTGGCTC
GACCGGGATG TGTTCACCAT CGCCGAGACC GGCTTTGGCA CCGGGCTCAA CTTCCTGCTG
ACCTGGGATC TCTGGCGCGG CCAGCCGGGA GCCGGCTGGC TGCACTACCT GAGCGTGGAA
CTGCATCCCT TCACCCGCGA GGACCTGGCC CGGCTGATCT CCACCCTGCC CCGGGCATTG
CGTGACCTGG GTGAGGCGCT GCTGGCCCAA TACCCGGCGC CGGTGCCCGG CTTTCACCGG
CTGTTGTTCC CCGGGGAACG TCTGAGCCTC ACCCTGATGT TCGGCGATGC CGTGGACTGC
CTGAGCCAGT GCCAGGCGCA GGTGGATGCC TGGTACCTGG ATGGCTTTGC CCCGGCACGC
AACCAGGCAC TGTGGCAGGA GGCCCTGTAC GCGCAAGTGG CGCGCCTGAC ACCGGCAGGC
GGAACACTCG CCAGCTTCAC CGCCGCAGGC CACGTGCGTC GCGGCCTGGA GACCACGGGT
TTTGCCATTG AGCGCCTGCC GGGTTTCGGC CACAAGCGGG AACGCATCCG CGGCCTGAGA
AACACACAGG CAGCGACCCC CGACCCCACC CCGCCCTGGT ACTCGAACCC GCCCCCCGCC
CCACCCGCCG CACGCCAGGC GGCGGTACTC GGCGCAGGCC TTGCCGGCAG CGCCGTGGCC
CTGGCCCTGG CGCGCCGGGG CTGGCAGGTC ACGGTGGTGG ATGGCGCGGA TCAGGTGGCC
GCCGGCGCCT CCGGCAACCC GGCCGGCATC CTCATGCCGC ACCTGAGCGC CGATCACGGG
GTGGTGAGCC GCTTCACCCT GTCGGCGGCG GCGTTTTCCC GCCAGTGGAT CGAATCCCTG
GGACTGACCC CGGAGGCCCT GCCCCGTGAC TGGTGCGGCG CCCTGTGGCT GGCCGACGGC
AAGCGCCTTG CGCAGCGCCT GGAACGCATC CGTGAACGCC TGACCCTGCC CCCGGAACTG
ATGCGGGCCG TGGATGCCGC CGAGGCCAGC GAGCTGGCCG GCGTGCCACT CAACCTGCCG
GGCCTGTTCC TGCCCCGGGC AGGCTGGGTG GACCCGGCGG CCCTGTGCCG CGCGCAACTG
GCAGCGGCGG GTGTGAATCT GCGCCTGGGA CGAGCGGTGT CACGCCTCAC CCGTGACGGA
CAAGACTGGC TGCTGGAAGA TGAGCATGGC GTGGCGATCA CACGCGCACC CCGGGTGGTG
CTGGCCAACG GCGCGGGCCT GCCGGGGCTG CATCCGGGCA TCGAACCCAG GCCCCTGCGC
GGTCAGCTGA GTGTGATTGA AACAAGCCGC AACACGCGGG GGCTGAAGAG GGTGCTGTGC
TACGAGGGCT ACCTGACACC GGCAACCCGA AGCGGCCATG TCTGCGGCGC GAGTTTCGTG
CGTGGTGACC GGAACACCCG GCTGCGTCCC GAGGAACATG CCAGCAACCT GGCGGGACTG
CGCCGGGTCT GGCCGGACGC GCTGGGGGAT GAGGACCCGC CCCTGTCCGG ACGGGCGGCG
CTGCGCTTCA ACGCCCCGGG CCGCCTACCG CTCGCGGGGC CGCTGCCGGA CATGGTGGCC
TTCGAACGCT GCTACGGGGA ACTGCATCAC GGCCGTCGCC CCGACAGTTA TCCCGGGGCG
CCCCTGCTGC CCGGCGTCTA CACCAGCCTG GCCCATGGCT CGCGGGGCCT GACCACCGCC
CCCCTGAGCG CCGAACTGCT GGCCTCGCTG ATGCACGGCG ATCCCCTGCC CCTGCCCCGT
GACCTGGTGG AGGCCCTGCA TCCGGCGCGG GATCGGGTCA GGGAACTCAG GAAAGCGCAT
TCCTGA
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| Protein sequence | MASATDTGAG FQPLEPAVLE FRDGTPWSSR YGDVYFSHGH GAEESRTVFL EANGLPERWL
DRDVFTIAET GFGTGLNFLL TWDLWRGQPG AGWLHYLSVE LHPFTREDLA RLISTLPRAL
RDLGEALLAQ YPAPVPGFHR LLFPGERLSL TLMFGDAVDC LSQCQAQVDA WYLDGFAPAR
NQALWQEALY AQVARLTPAG GTLASFTAAG HVRRGLETTG FAIERLPGFG HKRERIRGLR
NTQAATPDPT PPWYSNPPPA PPAARQAAVL GAGLAGSAVA LALARRGWQV TVVDGADQVA
AGASGNPAGI LMPHLSADHG VVSRFTLSAA AFSRQWIESL GLTPEALPRD WCGALWLADG
KRLAQRLERI RERLTLPPEL MRAVDAAEAS ELAGVPLNLP GLFLPRAGWV DPAALCRAQL
AAAGVNLRLG RAVSRLTRDG QDWLLEDEHG VAITRAPRVV LANGAGLPGL HPGIEPRPLR
GQLSVIETSR NTRGLKRVLC YEGYLTPATR SGHVCGASFV RGDRNTRLRP EEHASNLAGL
RRVWPDALGD EDPPLSGRAA LRFNAPGRLP LAGPLPDMVA FERCYGELHH GRRPDSYPGA
PLLPGVYTSL AHGSRGLTTA PLSAELLASL MHGDPLPLPR DLVEALHPAR DRVRELRKAH
S
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