| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_3369 |
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| Symbol | mnmC |
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| ID | 5602982 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Serratia proteamaculans 568 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009832 |
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| Strand | + |
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| Start bp | 3729378 |
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| End bp | 3731399 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640938915 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_001479595 |
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| Protein GI | 157371606 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00235092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCCACG CCCCGATCCA AACCGCAGCG TTATCCTGGA ATGAACAGGG TACACCTGTT
TCGAAACAGT TTGATGACGT CTACTTTTCT AATCAGGATG GGCTGGAAGA AACCCGCTAC
GTGTTTCTCA AGGGCAACCG GCTGCCGTCA CGTTTTGCCG AACACCCTCG CCCGCTGTTT
ATCGTGGCGG AAACCGGCTT CGGCACCGGA CTTAATTTTT TAACCCTGTG GCAGGCCTTT
GCCGATTTTC ATGCCACAAC GCCGGATGCC ACGCTGCAGC GGCTGCACTT TATCAGCTTT
GAAAAATTCC CGCTGCTGCA GGCCGATCTG GCGGCGGCAC ATGCCCGTTG GCCAGAGCTG
GCTCCCTATG CCGACGAGTT ACGCGCCCAA TGGCCGTTGC CGCTGCCGGG CTGCCACCGC
CTGTTGCTGG CGGAAGGCCG CATTACGCTG GATCTGTGGT TCGGTGACGT GAACGAATTG
CTACCACACT TCGACGCCAG CATGCACCGC CAAATCGATG CCTGGTTCCT CGACGGCTTC
GCCCCGTCGA AAAATCCGGA TATGTGGACC GAGCAGCTGT TCGCCGCCAT GGCGCGCTTT
GCCCGGCCGG GGGGCAGCCT GGCCACCTTC ACCGCAGCAG GTTTTGTTCG GCGCGGGCTG
CAGCAGGCCG GATTTGAAGT CATAAAAAGC AAAGGTTTCG GCCAGAAACG TGAAATGCTG
ATTGGTGAGC TGCCTGCCGA TGCACCAGCG GTGGCCCACC CCACGCCCTG GTTACTGCGC
CCGGCAGCCG ACAATACCGA CGATATTGCT ATCATTGGCG GCGGCGTTGC CAGCGCCTTG
ACTGCCCTCG CCTTGCTGCG CCGTGGTGCG AAGGTCACGC TGTACTGCGC CGATCCTCAG
GCGGCCGAAG GGGCATCGGG CAACCGTCAG GGAGCGCTTT ATCCGTTGCT GAACGGCCGC
GGCGATGCCC TGGAAAACTT CTTCAGCGCC GCTTTCCTTT TTGCCCGCCG CCAGTACGAT
GCGCTGCTAA AACAGGGCGT GACGTTTGAC CACCAGTGGT GTGGCGTCAG CCAATTGGCC
TATGATGAAA AAAGTGCCGG GAAGATTGCC AACATGCTGG CGGTTGAATG GCCACAACAA
CTGGCCGTGG CGGCCGATCG CACCACGCTC AGCGCCCTGT GCGGTATCGA CAGTGGTTTT
GGCGGCATTA ACTACCCGCA GGGTGGCTGG CTGTGCCCGG CCGAGCTGAC GCGCAATGCG
ATAGCCCTGG CGCAACATCA GGGGTTAAGC TGTCACTATG AGTCTGACGT CAAAGCCCTG
ACCGCCACCG ACAGCGGCTG GCAGCTCAGT TTCAACCAGG AGGAAACCCG ACAGCATGCG
ACGGTGATCC TGGCCAACGG CCATCGGCTT GGCGAACTGG CGCCCAGCGA AGCGCTGCCG
GTTTATGCGG TGCGCGGTCA AGTCTCCCAT ATTCCCACCA CCCCAGCGCT GAGCGAATTG
AAACAGGTGC TGTGTTACGA CGGCTACCTG ACGCCGGTCA ATGCCAACAA CCAACAGCAC
TGCATCGGTG CCAGCTACCA GCGCGGCGAA ACCGCCACCG AATACCGCGA GGAAGAACAG
CAGGACAACC GTGCTCGCCT GCTGCGCTGC CTGCCGGAAC AGAGCTGGCC AGCACAGGTT
GATGTCAGCG GTCAGCATGC CCGCTGCGGC GTGCGCAGCG CCACCCGCGA TCATCTGCCG
ATGATCGGCG CAGTACCGGA CTATCAGGCT ACGCTGACGC AGTATCAGCA TCTGCAGCGC
CAGCATCAAC GCGGCGAGGC TATCGCCAAT GCACCGAGCT ATCCCAATCT GTTTGTGATT
GGCGCGTTGG GTTCGCGTGG GCTGTGCTCA GCACCGCTGG CGGCGGAAAT TTTGGCGGCG
CAGCTGTTCG GCGAACCCTT GCCGGGCGAC GCAGACATGC TGGCAGCATT GAATCCTAAT
CGGATGTGGG TAAGGAAACT ACTGAAGGGA CGTGCGGTTT AA
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| Protein sequence | MSHAPIQTAA LSWNEQGTPV SKQFDDVYFS NQDGLEETRY VFLKGNRLPS RFAEHPRPLF
IVAETGFGTG LNFLTLWQAF ADFHATTPDA TLQRLHFISF EKFPLLQADL AAAHARWPEL
APYADELRAQ WPLPLPGCHR LLLAEGRITL DLWFGDVNEL LPHFDASMHR QIDAWFLDGF
APSKNPDMWT EQLFAAMARF ARPGGSLATF TAAGFVRRGL QQAGFEVIKS KGFGQKREML
IGELPADAPA VAHPTPWLLR PAADNTDDIA IIGGGVASAL TALALLRRGA KVTLYCADPQ
AAEGASGNRQ GALYPLLNGR GDALENFFSA AFLFARRQYD ALLKQGVTFD HQWCGVSQLA
YDEKSAGKIA NMLAVEWPQQ LAVAADRTTL SALCGIDSGF GGINYPQGGW LCPAELTRNA
IALAQHQGLS CHYESDVKAL TATDSGWQLS FNQEETRQHA TVILANGHRL GELAPSEALP
VYAVRGQVSH IPTTPALSEL KQVLCYDGYL TPVNANNQQH CIGASYQRGE TATEYREEEQ
QDNRARLLRC LPEQSWPAQV DVSGQHARCG VRSATRDHLP MIGAVPDYQA TLTQYQHLQR
QHQRGEAIAN APSYPNLFVI GALGSRGLCS APLAAEILAA QLFGEPLPGD ADMLAALNPN
RMWVRKLLKG RAV
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