| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1343 |
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| Symbol | mnmC |
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| ID | 5869107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 1497962 |
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| End bp | 1499926 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641546446 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_001667586 |
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| Protein GI | 167032355 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCACCC TCCTCCAGCA CGCCCAGATC GACTGGGACG ACCAGGGCCG CCCCCACTCG
CGGCAATACG ACGACGTCTA TTTCGCGGTC AACGAAGGCA TTGAAGAAAC CAAGCACGTG
TTCCTCGGCC AGACCCGCCT GGCCGAGCGC TTTGCCAACC TGGCGCCGCA TACCTGCGGG
GTGATCGGCG AAACCGGTTT TGGCACCGGG ATGAATTTTT TCTGCGCCTG GCAGCTGTTC
GACCAGCACG CTCACCGCGA CGCGCGCCTG CACTTCGTCA GCGTCGAAAA GTACCCCCTT
GGCCACGCTG ACATGGCCCG CGCCGTAAGC CTGTGGCCTG AGCTAGCTGC CTATACCGAG
CCGCTGCTGG AGCAATACGT GGCGGTACAC CCAGGTTTTC AGCAGTTCAC CTTCGCCAAT
GGCCGGGTCA CCCTCACGCT GTTGATCGGC GATGTGCTGG AACAGCTGCC GCAACTCGAT
GCACAGATCG ATGTGTGGTT CCTCGATGGC TTCGCCCCTG CCAAGAACCC CGACATGTGG
ACCCCAGAGC TGTTCGCGCA GCTGGCGCGG CTATCGCACC CGGGCACAGT GCTGGGCACG
TTCACCACCA CCGGCTGGGT ACGCCGCAGC CTGGTCGAAG CTGGCTTCGC CATGAAGAAG
GTGCCAGGCA TCGGCAAGAA GTGGGAGGTG ATGAGCGGCG CCTACGTCGG CCCCGTCCCC
GGCCCCAAAG CCCCCTGGTA CGCACGCCCA GCGGTTGCAC AAGGGCCGCG CGAAGCGCTG
GTGATCGGTG CCGGGCTCGC CGGCAGCACA ACCGCTGCCA GCCTGGCCCG GCGTGGCTGG
CAGGTCACTG TGCTGGAGCG CCACGAAGCC CCGGCCCAGG AAGCTTCGGG CAACCCGCAA
GGGGTGTTGT ACCTCAAGCT GTCTGCCCAT GGCACCGCGC TGTCGCAGAT GATTCTGTCC
GGGTTCGGCT ACACGCGGCG CCAGCTCCAG CGCTTGCAAC GTGGCCAGGA CTGGGATGCC
TGCGGCGTGC TGCAGTTGGC CTTCGACGCC AAGGAGGCCG AACGCCAGGG CAAACTGGCC
GCCGCCTTCG ACCACGACTT GCTGCACGCG CTGGAGCGCG CCGAGGCCGA AGCCATCGCC
GGGGTGGCCT TGCCAGCCGG TGGGTTGTTC TACCCCGAAG GGGGTTGGGT GCACCCGCCG
GCGCTGTGCC AGCAGCAGTT GCAGCACCCA GGTATTCGCC TGCTGACCCA CCAGGACGTC
ATCGAGCTGC GCAACATTGG TCAACACTGG CAAGCCTGGG CTGGCGATCG CCTGCTGGCC
AGCGCACCGG TGGTGGTCCT GGCCGGCGCT GCCGATGTGC GCCGTTTCGA GCCTTGCGCG
CAGTTGCCGC TCAAGCGCAT CCGTGGGCAG ATCACCCGCT TGCCGGCCAC CGCCAGCAGC
CGGGCGCTGC GTACCGTGGT GTGCGCGGAA GGCTATGTGG CACCACCGCG CGGGGATGAA
CATACCCTGG GCGCGAGTTT TGATTTCCAC AGCGAAGACC TTGCGCCGAC GGTGGCCGAA
CACCAGGGCA ACCTGGCGCT GCTGGACGAG ATTTCCGTCG ACCTGGCGCA GCGGCTGGGC
GTGGCTGAAC TGGACGCTGA ACAGTTGCAG GGGCGTGCAG CGTTCCGTTG CACCAGCCCG
GATTACCTGC CAATCGTCGG GCCGCTGGCC GACAGCCAGG CGTTTGCCGA GGCCTATGCG
GTGCTGGGCC GGGATGCGCG GCAGGTGCCG GATGTGGCCT GCCCATGGCT GGGCGGGTTG
TACGTGAACA GTGGGCATGG CTCGCGCGGG TTGATCACAG CGCCGTTGAG TGGCGAGCTG
GTGGCGGCCT GGGTGTGCGG GGAACCGTTG CCGTTGCCCC GCGCGGTGGC AGAAGCTTGT
CATCCGAACC GGTTCGCCTT GCGTAGGTTG ATTCGGGGCA AGTGA
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| Protein sequence | MSTLLQHAQI DWDDQGRPHS RQYDDVYFAV NEGIEETKHV FLGQTRLAER FANLAPHTCG
VIGETGFGTG MNFFCAWQLF DQHAHRDARL HFVSVEKYPL GHADMARAVS LWPELAAYTE
PLLEQYVAVH PGFQQFTFAN GRVTLTLLIG DVLEQLPQLD AQIDVWFLDG FAPAKNPDMW
TPELFAQLAR LSHPGTVLGT FTTTGWVRRS LVEAGFAMKK VPGIGKKWEV MSGAYVGPVP
GPKAPWYARP AVAQGPREAL VIGAGLAGST TAASLARRGW QVTVLERHEA PAQEASGNPQ
GVLYLKLSAH GTALSQMILS GFGYTRRQLQ RLQRGQDWDA CGVLQLAFDA KEAERQGKLA
AAFDHDLLHA LERAEAEAIA GVALPAGGLF YPEGGWVHPP ALCQQQLQHP GIRLLTHQDV
IELRNIGQHW QAWAGDRLLA SAPVVVLAGA ADVRRFEPCA QLPLKRIRGQ ITRLPATASS
RALRTVVCAE GYVAPPRGDE HTLGASFDFH SEDLAPTVAE HQGNLALLDE ISVDLAQRLG
VAELDAEQLQ GRAAFRCTSP DYLPIVGPLA DSQAFAEAYA VLGRDARQVP DVACPWLGGL
YVNSGHGSRG LITAPLSGEL VAAWVCGEPL PLPRAVAEAC HPNRFALRRL IRGK
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