Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_1328 |
Symbol | mnmC |
ID | 6068320 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | - |
Start bp | 1457153 |
End bp | 1459159 |
Gene Length | 2007 bp |
Protein Length | 668 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641600750 |
Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
Protein accession | YP_001724321 |
Protein GI | 170019367 |
COG category | [E] Amino acid transport and metabolism [S] Function unknown |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) [COG4121] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.831924 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAAACACT ACTCCATACA ACCTGCCAAC CTCGAATTTA ATGCTGAGGG TACACCTGTT TCCCGAGATT TTGACGATGT CTATTTTTCC AACGATAACG GGCTGGAAGA GACGCGTTAC GTTTTTCTGG GAGGTAACCA ATTAGAGGTA CGCTTTCCTG AGCATCCACA TCCTCTGTTT GTGGTAGCAG AGAGCGGCTT CGGCACCGGA TTAAACTTCC TGACGCTTTG GCAGGCATTT GATCAGTTTC GCGAAGCACA TCCGCAAGCG CGATTACAAC GCTTACATTT CATTAGTTTT GAGAAATTTC CCCTCACCCG TGCGGATTTA GCCTTAGCGC ATCAACACTG GCCGGAACTG GCTCCGTGGG CAGAACAACT TCAGGCGCAG TGGCCAATGC CCTTGCCCGG TTGCCATCGT TTATTGCTCG ATGAAGGCCG CGTGACGCTG GATTTATGGT TTGGCGATAT TAACGAACTG ACCAGCCAAC TGGACGATTC GCTAAATCAA AAAGTAGATG CCTGGTTTCT GGACGGCTTT GCGCCAGCTA AAAACCCGGA TATGTGGACG CAAAATCTGT TTAACGCCAT GGCAAGGTTG GCGCGTCCAG GCGGCACGCT GGCGACATTT ACGTCTGCCG GTTTTGTCCG CCGCGGTTTG CAGGAAGCCG GATTCACGAT GCAAAAACGT AAGGGCTTTG GGCGCAAACG GGAAATGCTT TGCGGGGTGA TGGAACAGAC ATTACCGCTC CCCTGCTCCG CGCCGTGGTT TAACCGCACG GGCAGCAGCA AACGGGAAGC GGCGATTATC GGCGGTGGTA TTGCCAGCGC GTTGTTGTCG CTGGCGCTAT TACGGCGCGG CTGGCAGGTA ACGCTTTATT GCGCGGATGA GGCCCCCGCA CTGGGTGCTT CCGGCAATCG CCAGGGGGCG CTGTATCCGT TATTAAGCAA ACACGATGAG GCGCTAAACC GCTTTTTCTC TAATGCGTTT ACTTTTGCTC GTCGGTTTTA CGACCAATTA CCCGTTAAAT TTGATCATGA CTGGTGCGGC GTCACGCAGT TAGGCTGGGA TGAGAAAAGC CAGCATAAAA TCGCACAGAT GTTGTCAATG GATTTACCCG CAGAACTGGC TGTAGCCGTT GAGGCAAATG CGGTTGAACA AATTACGGGC GTTGCGACAA ATTGCAGCGG CATTACTTAT CCGCAAGGTG GTTGGCTGTG CCCAGCAGAA CTGACCCGTA ATGTGCTGGA ACTGGCGCAA CAGCAGGGTT TGCAGATTTA TTATCAATAT CAGTTACAGA ATTTATCCCG TAAGGATGAC TGTTGGTTGT TGAATTTTGC AGGAGATCAG CAAGCAACAC ACAGCGTAGT GGTACTGGCG AACGGGCATC AAATCAGCCG ATTCAGCCAA ACGTCGACTC TCCCGGTGTA TTCGGTTGCC GGGCAGGTCA GCCATATTCC GACAACGCCG GAATTGGCAG AGCTGAAGCA GGTGCTGTGC TATGACGGTT ATCTCACGCC ACAAAATCCG GCGAATCAAC ATCATTGTAT TGGTGCCAGT TATCATCGCG GCAGCGAAGA TACGGCGTAC AGTGAGGACG ATCAGCAGCA GAATCGCCAG CGGTTGATTG ATTGTTTCCC GCAGGCACAG TGGGCAAAAG AGGTTGATGT CAGTGATAAA GAGGCGCGCT GCGGTGTGCG TTGTGCCACC CGCGATCATC TGCCAATGGT AGGCAATGTT CCCGATTATG AGGCAACACT CGTGGAATAT GCGTCGTTGG CGGAGCAGAA AGATGAGGCG GTAAGCGCGC CGGTTTTTGA CGATCTCTTT ATGTTTGCGG CTTTAGGTTC TCGCGGTTTG TGTTCTGCCC CGCTGTGTGC CGAGATTCTG GCGGCGCAGA TGAGCGACGA ACCGATTCCG ATGGATGCCA GTACGCTGGC GGCGTTAAAC CCGAATCGGT TATGGGTGCG GAAATTGTTG AAGGGTAAAG CGGTTAAGGC GGGGTAA
|
Protein sequence | MKHYSIQPAN LEFNAEGTPV SRDFDDVYFS NDNGLEETRY VFLGGNQLEV RFPEHPHPLF VVAESGFGTG LNFLTLWQAF DQFREAHPQA RLQRLHFISF EKFPLTRADL ALAHQHWPEL APWAEQLQAQ WPMPLPGCHR LLLDEGRVTL DLWFGDINEL TSQLDDSLNQ KVDAWFLDGF APAKNPDMWT QNLFNAMARL ARPGGTLATF TSAGFVRRGL QEAGFTMQKR KGFGRKREML CGVMEQTLPL PCSAPWFNRT GSSKREAAII GGGIASALLS LALLRRGWQV TLYCADEAPA LGASGNRQGA LYPLLSKHDE ALNRFFSNAF TFARRFYDQL PVKFDHDWCG VTQLGWDEKS QHKIAQMLSM DLPAELAVAV EANAVEQITG VATNCSGITY PQGGWLCPAE LTRNVLELAQ QQGLQIYYQY QLQNLSRKDD CWLLNFAGDQ QATHSVVVLA NGHQISRFSQ TSTLPVYSVA GQVSHIPTTP ELAELKQVLC YDGYLTPQNP ANQHHCIGAS YHRGSEDTAY SEDDQQQNRQ RLIDCFPQAQ WAKEVDVSDK EARCGVRCAT RDHLPMVGNV PDYEATLVEY ASLAEQKDEA VSAPVFDDLF MFAALGSRGL CSAPLCAEIL AAQMSDEPIP MDASTLAALN PNRLWVRKLL KGKAVKAG
|
| |