| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1887 |
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| Symbol | mnmC |
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| ID | 4038691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 2053319 |
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| End bp | 2055337 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637977269 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_584035 |
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| Protein GI | 94310825 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCGCG TTCTTGAGCC CGCCGAACCC ATTCTGTCCA ATGACGGTAC TCCCTATTCG
CCTCGCTATG ACGATGTCTA TCACAGCGCG CGTGGAGGTC TGGCGCAGGC ACATCACGTG
TTTCTCGGTG GCAATGGTCT GCCCGAAGGC TGGGCCGGGC GCGAGCAGTT TGTCATTGTC
GAGACGGGGT TTGGGCAGGG CCTGAATTTC CTCGCCACCT GGCAGGCATG GCGTAGCGAT
CCGCAGCGTT GCCGACGGCT GCATTTCGTG TCGATCGAGA AACATCCCTT CACGCGCGAA
GGTCTGGCGC GATTACATGC ACATGCTGGC CTGGGTGATC TGCTGCCGTT ATCCGACCAA
TTGCAGCAAC AATGGCCTGA TGCGTTGCCC GGCTTGCACA GACTGTCGTT CGAGGATGGG
GCGGTCACGC TGACGCTGGC GTTGGGCGAC GTGGAAACGA TGTTGCCGAA GCTAGTGCTT
GGCGCCGATG CGTTCTACCT CGATGGGTTT TCGCCATCGC GCAACGCCGA GATGTGGTCC
GACACCGTGT TCCGCGGCCT GGCGCGTCTC GCCCGCATCG GTGCGACGCT CGCGACCTAC
ACAGCGGCGG GATTCGTGAG GCGCGGGCTC ACGGCGGCCG GGTTCGAGGC GCACAAGGCG
CCCGGATTTG GTGGCAAGCG AGACATGACC GTGGCGCGTT TCGCGCCAGT TTGGAAGAAC
CGCCGTCATG CGCCGCCCGA GGCAGCGCAA TGGGCCGAGC GACATGCCAT CGTCATTGGA
GCGGGGCTGG CGGGATGCGC CGTGACCGAA CGTCTGGCTG CGCGTGGCTG GCGCGTGACA
TTGCTCGACG CGCATGACGG ACCGGCGCGA CAGACATCGT GCCACCGTGC CGCGGCGATG
CATGCGCATG TGTCCGCCGA CGACAGCTTC CTTTCGCGAC TGTCCCGTGC TGGCAACCTT
CATGCGTTGC GCGCGTGGGG CGCATTGGAG GCGGCTGGCT ATCCCGTGGG ATGGCACGGC
ACTGGCGTCC TGCAGATCGG CGAGGATGAT GCTGAGAACG CGGCGCAGCA AGCCGCACTT
GCGGAGCTTC GGTTTCCGGA GTCATTTGTG CGCTGGATGT CGCCGCAAGA GGCTACGGAG
CAGCATGGCG CAACGGTTCC GAGAGGCGGC TTGTGGTTTC CGAAGGGAGG CTGGGTGGCG
CCGCCCGACA TTTGCCGCGC GCAGCTTGCG AAAGCTGGTG CGGCTGTGGA TGCGCTATTC
AATTGCCGCG TGGCAGCGAT CAGGCGGATC GGTGATGCGT GGCAGGCGCT TGCCGATGAC
GGTGGGGTAT TGGCCGCAGC GCCGGTTCTG GTGCTCGCCA ATGCCTACGA AGCCGATCGG
CTGACCTCGG GCCAGTTCCT GGCGCTGCGC CGGGTGCGTG GCCAACTGAC GGATCTGGCA
CCCGCGCAGG CAGAGGCGCT GGGTGGTTGG CCCGATTGCG TCGTGACCGG CGGTGGTTAC
CTACTGCCGC GTGACGCGGC GGGCGGAGCA AGGATGGGCT CGAGTTATGA AGCGGACGAA
GGGCCGCTGG TCGAGCGTCC GGAAGTGCAC GCTGCCAACC TCGATCGTCT GGCATCGATG
CTGCCGGACC GGGCGTCACA AATCGCGCAG ATCGACCCCG CCACGCTGCA GGGTTACGTC
GGCGTGCGCA CGGTCACGTA TAACCGTCTT CCGCTTGTCG GGCGCATTGC CGACGATGCG
CAGGCACTGT CCCGTGCCGC TGCGTTGCGT GGCGCGCATT TACGCGATCT GCCGCGGCTT
CCCGGTCTGT ATGCGGCCCT TGCATATGCC TCGCGGGGCC TCACATGGGC AGCCTTGTGT
GCGGAGCTGA TCGCCAGCCA GATCGAGGGC GAACCACTGC CGCTCGAGGC CGATCTGGCA
GATGCGATCG ATCCCGCACG GCTCCTGCTG CGCGCGCTCC GACACGGTCA CGCGCAGGCG
CCCGAATCGG CGGGGCCTGG GGTGGATGCG GCCGGCTAG
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| Protein sequence | MTRVLEPAEP ILSNDGTPYS PRYDDVYHSA RGGLAQAHHV FLGGNGLPEG WAGREQFVIV
ETGFGQGLNF LATWQAWRSD PQRCRRLHFV SIEKHPFTRE GLARLHAHAG LGDLLPLSDQ
LQQQWPDALP GLHRLSFEDG AVTLTLALGD VETMLPKLVL GADAFYLDGF SPSRNAEMWS
DTVFRGLARL ARIGATLATY TAAGFVRRGL TAAGFEAHKA PGFGGKRDMT VARFAPVWKN
RRHAPPEAAQ WAERHAIVIG AGLAGCAVTE RLAARGWRVT LLDAHDGPAR QTSCHRAAAM
HAHVSADDSF LSRLSRAGNL HALRAWGALE AAGYPVGWHG TGVLQIGEDD AENAAQQAAL
AELRFPESFV RWMSPQEATE QHGATVPRGG LWFPKGGWVA PPDICRAQLA KAGAAVDALF
NCRVAAIRRI GDAWQALADD GGVLAAAPVL VLANAYEADR LTSGQFLALR RVRGQLTDLA
PAQAEALGGW PDCVVTGGGY LLPRDAAGGA RMGSSYEADE GPLVERPEVH AANLDRLASM
LPDRASQIAQ IDPATLQGYV GVRTVTYNRL PLVGRIADDA QALSRAAALR GAHLRDLPRL
PGLYAALAYA SRGLTWAALC AELIASQIEG EPLPLEADLA DAIDPARLLL RALRHGHAQA
PESAGPGVDA AG
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