160 homologs were found in PanDaTox collection
for query gene Dshi_0152 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009952  Dshi_0152  protein of unknown function DUF752  100 
 
 
230 aa  453  1e-127  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2539  hypothetical protein  60.19 
 
 
266 aa  248  4e-65  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0656342  normal 
 
 
-
 
NC_007493  RSP_0879  hypothetical protein  60.19 
 
 
266 aa  247  1e-64  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0142  hypothetical protein  58.59 
 
 
242 aa  246  3e-64  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0147  hypothetical protein  56.31 
 
 
227 aa  238  5e-62  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00930427  normal 
 
 
-
 
NC_007802  Jann_0140  hypothetical protein  55.36 
 
 
218 aa  234  8e-61  Jannaschia sp. CCS1  Bacteria  normal  0.946459  normal 
 
 
-
 
NC_008686  Pden_2336  hypothetical protein  60.18 
 
 
218 aa  228  6e-59  Paracoccus denitrificans PD1222  Bacteria  normal  0.0305292  normal 
 
 
-
 
NC_009832  Spro_3369  5-methylaminomethyl-2-thiouridine methyltransferase  45 
 
 
673 aa  175  5e-43  Serratia proteamaculans 568  Bacteria  decreased coverage  0.00235092  normal 
 
 
-
 
NC_008740  Maqu_1170  hypothetical protein  42.42 
 
 
631 aa  170  1e-41  Marinobacter aquaeolei VT8  Bacteria  normal  0.285143  n/a   
 
 
-
 
NC_012912  Dd1591_1358  5-methylaminomethyl-2-thiouridine methyltransferase  43.04 
 
 
672 aa  169  4e-41  Dickeya zeae Ech1591  Bacteria  normal  0.0608182  n/a   
 
 
-
 
NC_013421  Pecwa_1458  5-methylaminomethyl-2-thiouridine methyltransferase  41.67 
 
 
675 aa  165  5e-40  Pectobacterium wasabiae WPP163  Bacteria  normal  0.622829  n/a   
 
 
-
 
NC_012880  Dd703_2586  5-methylaminomethyl-2-thiouridine methyltransferase  40.33 
 
 
675 aa  163  2.0000000000000002e-39  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1519  5-methylaminomethyl-2-thiouridine methyltransferase  40.96 
 
 
689 aa  161  7e-39  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0252518  n/a   
 
 
-
 
NC_009708  YpsIP31758_1410  5-methylaminomethyl-2-thiouridine methyltransferase  40.96 
 
 
689 aa  161  7e-39  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000203784  n/a   
 
 
-
 
NC_010159  YpAngola_A0372  5-methylaminomethyl-2-thiouridine methyltransferase  40.96 
 
 
689 aa  161  7e-39  Yersinia pestis Angola  Bacteria  hitchhiker  0.000353518  normal 
 
 
-
 
NC_012917  PC1_2806  5-methylaminomethyl-2-thiouridine methyltransferase  41.25 
 
 
675 aa  160  1e-38  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.641074  n/a   
 
 
-
 
NC_008228  Patl_3384  hypothetical protein  39.38 
 
 
705 aa  155  4e-37  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1694  5-methylaminomethyl-2-thiouridine methyltransferase  39.58 
 
 
674 aa  152  4e-36  Vibrio cholerae O395  Bacteria  hitchhiker  0.00252388  n/a   
 
 
-
 
NC_011353  ECH74115_3465  5-methylaminomethyl-2-thiouridine methyltransferase  41.41 
 
 
668 aa  152  5e-36  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_2481  5-methylaminomethyl-2-thiouridine methyltransferase  41.85 
 
 
668 aa  152  5e-36  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4486  hypothetical protein  42.32 
 
 
241 aa  152  5.9999999999999996e-36  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_03106  5-methylaminomethyl-2-thiouridine methyltransferase  39.26 
 
 
672 aa  151  5.9999999999999996e-36  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002869  5-methylaminomethyl-2-thiouridine-forming enzyme MnmC  39 
 
 
672 aa  151  8e-36  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00103068  n/a   
 
 
-
 
CP001509  ECD_02249  hypothetical protein  40.97 
 
 
668 aa  150  2e-35  Escherichia coli BL21(DE3)  Bacteria  normal  0.425785  n/a   
 
 
-
 
NC_003295  RSc1709  5-methylaminomethyl-2-thiouridine methyltransferase  43.5 
 
 
657 aa  150  2e-35  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0318232 
 
 
-
 
NC_012892  B21_02209  hypothetical protein  40.97 
 
 
668 aa  150  2e-35  Escherichia coli BL21  Bacteria  normal  0.334228  n/a   
 
 
-
 
NC_007492  Pfl01_4098  5-methylaminomethyl-2-thiouridine methyltransferase  38.77 
 
 
659 aa  149  2e-35  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3230  5-methylaminomethyl-2-thiouridine methyltransferase  39.92 
 
 
657 aa  150  2e-35  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_1328  5-methylaminomethyl-2-thiouridine methyltransferase  40.97 
 
 
668 aa  149  2e-35  Escherichia coli ATCC 8739  Bacteria  normal  0.831924  normal 
 
 
-
 
NC_009800  EcHS_A2475  5-methylaminomethyl-2-thiouridine methyltransferase  40.97 
 
 
668 aa  149  2e-35  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2621  5-methylaminomethyl-2-thiouridine methyltransferase  40.97 
 
 
666 aa  149  3e-35  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.00000350397 
 
 
-
 
NC_009654  Mmwyl1_3401  hypothetical protein  37.78 
 
 
674 aa  149  3e-35  Marinomonas sp. MWYL1  Bacteria  normal  0.473665  normal 
 
 
-
 
NC_011094  SeSA_A2608  5-methylaminomethyl-2-thiouridine methyltransferase  40.97 
 
 
666 aa  149  4e-35  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_1332  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  40.53 
 
 
668 aa  149  5e-35  Escherichia coli DH1  Bacteria  normal  0.602375  n/a   
 
 
-
 
NC_010658  SbBS512_E2702  5-methylaminomethyl-2-thiouridine methyltransferase  40.53 
 
 
668 aa  149  5e-35  Shigella boydii CDC 3083-94  Bacteria  normal  0.673186  n/a   
 
 
-
 
NC_008309  HS_0664  5-methylaminomethyl-2-thiouridine methyltransferase  36.82 
 
 
676 aa  149  5e-35  Haemophilus somnus 129PT  Bacteria  normal  0.0436264  n/a   
 
 
-
 
NC_012560  Avin_34940  5-methylaminomethyl-2-thiouridine methyltransferase  42.11 
 
 
653 aa  149  5e-35  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B2519  5-methylaminomethyl-2-thiouridine methyltransferase  40.97 
 
 
666 aa  149  5e-35  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A2568  5-methylaminomethyl-2-thiouridine methyltransferase  40.53 
 
 
666 aa  148  6e-35  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.580805  normal 
 
 
-
 
NC_011989  Avi_3359  hypothetical protein  41.43 
 
 
219 aa  148  7e-35  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0704  hypothetical protein  42.73 
 
 
699 aa  148  8e-35  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A2732  5-methylaminomethyl-2-thiouridine methyltransferase  40.53 
 
 
666 aa  148  9e-35  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_2619  5-methylaminomethyl-2-thiouridine methyltransferase  40.53 
 
 
668 aa  147  1.0000000000000001e-34  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3742  5-methylaminomethyl-2-thiouridine methyltransferase  38.1 
 
 
665 aa  146  2.0000000000000003e-34  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  decreased coverage  0.0063824 
 
 
-
 
NC_011312  VSAL_I1070  5-methylaminomethyl-2-thiouridine methyltransferase  39.75 
 
 
680 aa  147  2.0000000000000003e-34  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.388206  n/a   
 
 
-
 
NC_012856  Rpic12D_1538  5-methylaminomethyl-2-thiouridine methyltransferase  41.56 
 
 
672 aa  146  2.0000000000000003e-34  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0998844 
 
 
-
 
NC_008709  Ping_1996  fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  33.61 
 
 
690 aa  147  2.0000000000000003e-34  Psychromonas ingrahamii 37  Bacteria  normal  0.155036  normal  0.387333 
 
 
-
 
NC_009436  Ent638_2872  5-methylaminomethyl-2-thiouridine methyltransferase  40.35 
 
 
666 aa  147  2.0000000000000003e-34  Enterobacter sp. 638  Bacteria  normal  0.715577  normal  0.0703666 
 
 
-
 
NC_004578  PSPTO_1639  oxidoreductase, FAD-binding protein  37.66 
 
 
660 aa  144  1e-33  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.562541  n/a   
 
 
-
 
NC_011138  MADE_01191  fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  40.59 
 
 
741 aa  144  2e-33  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_19400  5-methylaminomethyl-2-thiouridine methyltransferase  42.67 
 
 
654 aa  143  2e-33  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0825831  normal 
 
 
-
 
NC_011901  Tgr7_1861  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  38.74 
 
 
661 aa  141  7e-33  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2850  5-methylaminomethyl-2-thiouridine methyltransferase  41.67 
 
 
644 aa  140  9.999999999999999e-33  Dechloromonas aromatica RCB  Bacteria  normal  0.413253  normal  0.437245 
 
 
-
 
NC_007520  Tcr_0130  hypothetical protein  41.05 
 
 
674 aa  141  9.999999999999999e-33  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.000346728  n/a   
 
 
-
 
NC_007614  Nmul_A1927  hypothetical protein  37.71 
 
 
617 aa  141  9.999999999999999e-33  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.224364  n/a   
 
 
-
 
NC_009656  PSPA7_1671  5-methylaminomethyl-2-thiouridine methyltransferase  42.67 
 
 
654 aa  140  9.999999999999999e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_010338  Caul_0866  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  46.54 
 
 
601 aa  139  3e-32  Caulobacter sp. K31  Bacteria  normal  normal  0.205507 
 
 
-
 
NC_012850  Rleg_3155  protein of unknown function DUF752  41.47 
 
 
238 aa  138  6e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.326369 
 
 
-
 
NC_011369  Rleg2_2891  protein of unknown function DUF752  41.47 
 
 
240 aa  138  7e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0866147  normal  0.0591468 
 
 
-
 
NC_010682  Rpic_1871  5-methylaminomethyl-2-thiouridine methyltransferase  40.35 
 
 
672 aa  137  1e-31  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0302238 
 
 
-
 
NC_007347  Reut_A1378  5-methylaminomethyl-2-thiouridine methyltransferase  39.35 
 
 
668 aa  134  9e-31  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_3066  5-methylaminomethyl-2-thiouridine methyltransferase  38.91 
 
 
655 aa  134  9e-31  Burkholderia phymatum STM815  Bacteria  normal  normal  0.16811 
 
 
-
 
NC_007947  Mfla_1390  hypothetical protein  37.2 
 
 
622 aa  130  2.0000000000000002e-29  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.909333 
 
 
-
 
NC_007951  Bxe_A4505  5-methylaminomethyl-2-thiouridine methyltransferase  38.46 
 
 
656 aa  129  3e-29  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1343  5-methylaminomethyl-2-thiouridine methyltransferase  34.63 
 
 
654 aa  129  3e-29  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_1076  protein of unknown function DUF752  36.44 
 
 
619 aa  129  3e-29  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.506712  normal 
 
 
-
 
NC_010681  Bphyt_3932  5-methylaminomethyl-2-thiouridine methyltransferase  39.11 
 
 
656 aa  129  4.0000000000000003e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1751  5-methylaminomethyl-2-thiouridine methyltransferase  34.2 
 
 
654 aa  128  7.000000000000001e-29  Pseudomonas putida KT2440  Bacteria  normal  0.266449  normal 
 
 
-
 
NC_009512  Pput_3963  5-methylaminomethyl-2-thiouridine methyltransferase  34.2 
 
 
654 aa  127  1.0000000000000001e-28  Pseudomonas putida F1  Bacteria  normal  0.94523  normal  0.0279642 
 
 
-
 
NC_007651  BTH_I0003  5-methylaminomethyl-2-thiouridine methyltransferase  38.43 
 
 
657 aa  125  6e-28  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1359  5-methylaminomethyl-2-thiouridine methyltransferase  33.33 
 
 
657 aa  125  7e-28  Pseudomonas putida W619  Bacteria  normal  0.490609  normal  0.307096 
 
 
-
 
NC_007973  Rmet_1887  5-methylaminomethyl-2-thiouridine methyltransferase  38.12 
 
 
672 aa  125  8.000000000000001e-28  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2377  hypothetical protein  35.11 
 
 
667 aa  125  8.000000000000001e-28  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.954774 
 
 
-
 
NC_006368  lpp1489  hypothetical protein  30.38 
 
 
666 aa  124  1e-27  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1494  hypothetical protein  30.8 
 
 
666 aa  124  1e-27  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007912  Sde_1471  hypothetical protein  35.74 
 
 
707 aa  124  1e-27  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A3396  5-methylaminomethyl-2-thiouridine methyltransferase  38.36 
 
 
708 aa  123  2e-27  Burkholderia mallei SAVP1  Bacteria  normal  0.145892  n/a   
 
 
-
 
NC_009074  BURPS668_0003  5-methylaminomethyl-2-thiouridine methyltransferase  38.36 
 
 
708 aa  123  2e-27  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2914  5-methylaminomethyl-2-thiouridine methyltransferase  37.84 
 
 
660 aa  122  5e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0217  5-methylaminomethyl-2-thiouridine methyltransferase  37.84 
 
 
660 aa  122  5e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1956  5-methylaminomethyl-2-thiouridine methyltransferase  39.45 
 
 
644 aa  122  5e-27  Thauera sp. MZ1T  Bacteria  normal  0.243551  n/a   
 
 
-
 
NC_008836  BMA10229_A1628  5-methylaminomethyl-2-thiouridine methyltransferase  37.84 
 
 
711 aa  122  6e-27  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0003  5-methylaminomethyl-2-thiouridine methyltransferase  37.84 
 
 
711 aa  122  6e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2973  5-methylaminomethyl-2-thiouridine methyltransferase  37.84 
 
 
711 aa  122  6e-27  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3653  hypothetical protein  36.28 
 
 
249 aa  121  8e-27  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1989  hypothetical protein  33.46 
 
 
739 aa  121  9.999999999999999e-27  Psychrobacter sp. PRwf-1  Bacteria  normal  decreased coverage  0.000136918 
 
 
-
 
NC_010084  Bmul_0067  5-methylaminomethyl-2-thiouridine methyltransferase  39.35 
 
 
657 aa  120  1.9999999999999998e-26  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_1701  hypothetical protein  33.04 
 
 
696 aa  118  7.999999999999999e-26  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_1977  hypothetical protein  33.91 
 
 
697 aa  117  9.999999999999999e-26  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_011728  BbuZS7_0764  hypothetical protein  26.7 
 
 
225 aa  116  3e-25  Borrelia burgdorferi ZS7  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_2983  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  36.41 
 
 
620 aa  115  6.9999999999999995e-25  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4644  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  38.03 
 
 
645 aa  115  6.9999999999999995e-25  Delftia acidovorans SPH-1  Bacteria  normal  0.683342  hitchhiker  0.0000257745 
 
 
-
 
NC_012039  Cla_0621  5-methylaminomethyl-2-thiouridine methyltransferase  27.6 
 
 
612 aa  113  3e-24  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3808  hypothetical protein  27.27 
 
 
682 aa  110  1.0000000000000001e-23  Colwellia psychrerythraea 34H  Bacteria  normal  0.424966  n/a   
 
 
-
 
NC_007404  Tbd_1641  5-methylaminomethyl-2-thiouridine methyltransferase  37.07 
 
 
616 aa  109  3e-23  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.168869  normal 
 
 
-
 
NC_011992  Dtpsy_1926  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  37.79 
 
 
639 aa  109  4.0000000000000004e-23  Acidovorax ebreus TPSY  Bacteria  normal  0.218262  n/a   
 
 
-
 
NC_008782  Ajs_1796  hypothetical protein  37.79 
 
 
639 aa  109  4.0000000000000004e-23  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_2424  hypothetical protein  36.24 
 
 
637 aa  108  8.000000000000001e-23  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3048  hypothetical protein  38.97 
 
 
635 aa  107  2e-22  Acidovorax citrulli AAC00-1  Bacteria  normal  0.115559  normal  0.0258128 
 
 
-
 
NC_007948  Bpro_2343  hypothetical protein  36.24 
 
 
637 aa  106  3e-22  Polaromonas sp. JS666  Bacteria  normal  0.955559  normal 
 
 
-
 
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