Gene Vapar_2983 details

Gene Information

• Locus tag: Vapar_2983
• ID: 7972259
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3139010
• End bp: 3140872
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 644793568
• Product: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC
• Protein accession: YP_002944869
• Protein GI: 239815959
• COG category: [S] Function unknown
• COG ID: [COG4121] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGCCGCCG AGCCCGTCGC CTGGCGCGCC GACGGCGTGC CGTTGAGCGA GCGCTTCGGC 
GACATCTATC ACACCGAAAC CGGGGCGCTG GCGCAGTCGC GCCACGTGTT CCTGGGCGGC 
TGCGGCCTGC CCGGCGCCTG GTCCGGGCGG CCGCAATGGC GGATTCTCGA AACCGGATTC 
GGGCTTGGCC TCAATTTCCT GACAAGCTGG CAGGCCTGGC GCGCCGATGC GAACCGGCCG 
CGGATGCTGC ACTACGTCTC GGTCGAGGCG TACCCGGTCG GGCCCCATGA CCTGCTGCGC 
GCCGCCGGGG CCTACCCCGA GCTGATGCCG CTGGCCGAGC AACTGGCCGC GCAGTGGCAC 
GGGCTGCTGC CGGGCTTTCA CCGGCTGGCC TTCGACGCCG GCCGCGTGCT GCTCACGCTG 
TGCATCGGCG ACGTGCAGCC GATGCTGCGC GCCCAGCGCT TCGAGGCCGA CAGCCTCTTC 
CTGGACGGCT TCAGCCCGCA GCAGAACCCC GCCATGTGGT CGCCCGACAC GCTGAAGGCG 
GTGTCGCGCT TTGCGCGCCA GGGCACGGGC CTTGCCACCT GGACCTATGC GCGTGCGGTG 
CGCGATGCGC TCTCGCAGAA CGGCTTCCAG CTCGAAAGGC GGCCGGGCCT GCCGCCCAAG 
CGCGACTGCC TGGGCGGCGT GTTCGCGCCG GCCTGGACGG TGCGCCGTCG CGGCCCCGCG 
CCCGAGCAGG TCGAAGCACC GGGCCGCTGC GCCGTGATCG GTGCCGGGCT GGCCGGCGCG 
GCCGTGGCTG CCAGCCTGGC GCGGCGCGGA TGGCAGGTCA CGGTGCTCGA TGCGGCGGAC 
CGCCCCGCCG CCGGTGCGTC CGGACTCCCG GTCGGTGTGA TGGCGCCGCA TGTCTCGCCC 
GACGATGCCC TGCTGTCGCG GCTCACGCGC GCCGGCATCC GCGCGACCTG GCATGAACTG 
GAACGCCTGC TGGAGGAAGG CCGCGATTGG CGCGCCAGTG GCGTGCTGGA GCGCCGGCCC 
GAGGGCGACA CGCGCGTTCC CACCGGGTGG AGCGACAGCG GCCCCAATGA GTCGTGGCCC 
GCGAGCGCTG TGCAATTGGC ACAGGCCCGC TTGCCGGCCG ATGCGCCGGC CCTCTGGCAT 
GCGCGCGCGG GCTGGGTGCG GCCGCAGCGG CTGATCACGG CCTGGCTGCG CGGGCCGGGC 
ATCGAGTTCC GCGGCAACGC ACGGGTGGCA CGCATGGCGC ACGGCGGTGG CACGTGGCAG 
CTGTTCGATG CGGCGGACCA ACTGCTGGCC GAAGCGGAGC GCGTGGTGAT CGCCGCGGGC 
TTCGAATCGG GCCGCTTCGC ACCGGAGCTT CCGCTGCAGC CCGTGCGCGG CCAGGTCATG 
TGGGGCGGCA TGGCGGCGGA TGACGGGCTG CCCCCGACAC CCGTCAATGG CGACGGCCAC 
CTGATCGCGC ACGTACCCGC CGACGGCGAC GGCACCCAGC TCTGGCTGGC CGGCGCCACC 
TTCGACCGCG ACAGCACCAA TCTCGAGGCG AACGGCGCCG ATGCCACCGC CAACCGCGAG 
CGCCTGGAGC GCCTGCATCC CGCCGCGGCC GCCGCGCTGG CCGCGAGCTT CGACCGCGGC 
CAGGTCAACG CCTGGGTCGG CGTGCGCTGC GCATCGGGCG ACCGCCGGCC GCTGGTCGGC 
CCGCTCGATG CCGATGGTGC AGCCGGTGCG CCAAGTCCCT GGGCCTGCAC CGCACTGGGC 
TCGCGCGGCC TGAGCTTTGC GGCCCTGTGC GCCGAACTGC TGGCCGCGCA ATGGCATGGC 
GAACCGCTGC CGCTGCCCGC CAACCTGGCC AAGGCGCTCG CCACCCAGCG AACGCAAGCG 
TAG 

 

Protein sequence

MAAEPVAWRA DGVPLSERFG DIYHTETGAL AQSRHVFLGG CGLPGAWSGR PQWRILETGF 
GLGLNFLTSW QAWRADANRP RMLHYVSVEA YPVGPHDLLR AAGAYPELMP LAEQLAAQWH 
GLLPGFHRLA FDAGRVLLTL CIGDVQPMLR AQRFEADSLF LDGFSPQQNP AMWSPDTLKA 
VSRFARQGTG LATWTYARAV RDALSQNGFQ LERRPGLPPK RDCLGGVFAP AWTVRRRGPA 
PEQVEAPGRC AVIGAGLAGA AVAASLARRG WQVTVLDAAD RPAAGASGLP VGVMAPHVSP 
DDALLSRLTR AGIRATWHEL ERLLEEGRDW RASGVLERRP EGDTRVPTGW SDSGPNESWP 
ASAVQLAQAR LPADAPALWH ARAGWVRPQR LITAWLRGPG IEFRGNARVA RMAHGGGTWQ 
LFDAADQLLA EAERVVIAAG FESGRFAPEL PLQPVRGQVM WGGMAADDGL PPTPVNGDGH 
LIAHVPADGD GTQLWLAGAT FDRDSTNLEA NGADATANRE RLERLHPAAA AALAASFDRG 
QVNAWVGVRC ASGDRRPLVG PLDADGAAGA PSPWACTALG SRGLSFAALC AELLAAQWHG 
EPLPLPANLA KALATQRTQA