| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0147 |
|---|
| Symbol | |
|---|
| ID | 4078814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 161599 |
|---|
| End bp | 162282 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638005441 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612142 |
|---|
| Protein GI | 99079988 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4121] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00930427 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGACC AGCAGGCACG GCTGAGCTGG CGAGAAGGCG ATCTGCCTGT CTCCGATCAG
TTCGACGATC CTTATTTCTC GCTGCAAAAC GGACTTCTGG AGACAGAGCA CGTCTTTCTG
GCGGGCAATG ACCTGCCCGC ACGCTTTGGG CCGGGGTTTC ATATCGCGGA ACTTGGCTTT
GGCACCGGGC TCAATATGCT GGCCGCCTGG CGCGCCTGGG AAGAAAGCGG ACAAGACACG
CCGCTGCACT TCACCAGCTT TGAGGCCTTC CCGATGACGC CAAGCGATAT GGCGCGCGCG
CTCGAGGCTT TTCCTGCCGT ATCCCCCTGG GCAGACCGGT TTTTGGCAAA ATGGTCCGGC
GGCGGGCGTT GCGATCTGGG CAGTTTGCAG CTCAACGTGA TCCTCGGAGA TGCGCGCGAG
GCGCTGCCTG TATGGTCAGG TGCGGCGAAT GCCTGGTTTC TGGACGGGTT TGCGCCCGCC
AAGAACCCGG AGCTCTGGCA AGAGGATCTT ATGCAAGCTG TCGCCGACCA CACCGCGGCG
GGTGGGACCG CTGCAACCTA TACTGCCGCA GGGTTCGTCC GTCGCGGCTT GGAGACGGCC
GGTTTCACGG TTGAGCGCAG CCCCGGTTTT GGCCGCAAGC GGCATATGAC ACGCGCGGTA
CTGACCCCCG CAGCAGAGGA CTGA
|
|---|
| Protein sequence | MADQQARLSW REGDLPVSDQ FDDPYFSLQN GLLETEHVFL AGNDLPARFG PGFHIAELGF
GTGLNMLAAW RAWEESGQDT PLHFTSFEAF PMTPSDMARA LEAFPAVSPW ADRFLAKWSG
GGRCDLGSLQ LNVILGDARE ALPVWSGAAN AWFLDGFAPA KNPELWQEDL MQAVADHTAA
GGTAATYTAA GFVRRGLETA GFTVERSPGF GRKRHMTRAV LTPAAED
|
|---|
| |