Gene Dtpsy_1926 details

Gene Information

• Locus tag: Dtpsy_1926
• ID: 7382044
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidovorax ebreus TPSY
• Kingdom: Bacteria
• Replicon accession: NC_011992
• Strand: +
• Start bp: 2060187
• End bp: 2062106
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 643655243
• Product: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC
• Protein accession: YP_002553382
• Protein GI: 222111118
• COG category: [S] Function unknown
• COG ID: [COG4121] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.218262
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCGAAC CGATTGAATG GCTGGAAGAC GGCACGCCCT ACAGCCCGCG CTTCTCAGAC 
CGGTACCACA GCGAGCAAGG CGGCCTGGAA CAAGCCCGCG GCACATTTCT CGCCGGCTGC 
GGCCTGCCCC AGGCCTGGCA GAACCAGCCG CAGTGGCGCG TGCTGGAAAC CGGCTTCGGC 
CTGGGCCTGA ATTTCCTCGT GACCTGGGCC GCCTGGCGCG CCGACCCCCA CCGGCCACAG 
CGGCTGCACT TCGTGTCTTG CGAGGCCTGG CCCGTGAGCG CGGCCGATCT GCTGCGCGCC 
GCGCCCATCG ATTCCACACT GCAATCGCTG GCCCAACAGT TGGCGGCGCA GTACTGGGGC 
TTGCTGCCGG GCGTGCACAG GCTCTCGTTC GACGGCGGGC AGGTGCTGCT CACGCTGTAC 
ATCGGTGACG CGCAAGCCCT GCTGAGGCAG CAGCAGCCCA CGGCGGATTC GGTGTACCTG 
GACGGCTTCG ACCCCCAGCA CAACCCGCAA ATGTGGGACA TCCACACCCT CAAGGCCGTG 
GCGCGCTGCT GCCGTCGCGG CACCCGCCTG GCGACGTGGA CGGTGGCGCG CGGCGTGCGG 
GACGGGCTGG TGCAGTGCGG CTTCGAGGTG CAAAAGGTGC CGGGTGTCCG CCCCAAGCGC 
GACAACCTGC AGGCCACCTA CGCGCCCCGC TGGGAGCCAC GCGCCGGCCA GCCCGTGCTG 
CCAGACGCCA CGGTGGCCGC CCCGGCCCGC TGCCTGGTGG TGGGCGCAGG ACTGGCGGGC 
GCCGCCGTGG CGGCCAGCCT GGCGCACCGT GGCTGGCAGG TCCAGGTGCT GGACCAGGCC 
GATCACCCTG CCGCCGGTGC ATCCGGCCTG CCGGCGGGGG TGTTCGCGCC CAATGTCTCG 
CAGGACGACA ACCTGATCTC ACGCCTGTCG CGCGCGGGGG TACGCACCAC GCTGAATACG 
CTGGCGCAGC TTCCAGCCGA GACGCGCGGC ACCGACTGGA GCGTGTGCGG CACGCTGGAG 
CACCGTGTGG ACGGCACCAC AGGATTGGCC TGGAGCGACG GGCCTGGCCT GGACTGGAGT 
CGCCCCGCAA CACCCGCACA ACTGCAGGCC AACGGCTTAT CGGCAGACAC GGTGGCCTGC 
TGGCACGAGC ACGCGGGCTG GGTGCGCCCG CCCCAGCTCA TCGCCCACCT GCTGAACGAC 
CCGGCCATCC ACTGGCGCGG CAGCGCGGCA GTGGCGGAGT TGCGCCGCAC CACCGTCGAC 
GGCCAGCCCC TCTGGCAGGC ACTGGACGCC GAAGGGCGCG TCCTGGCCGA GGCGGAACTT 
GCCGTGGTTT GCGCCGGGCA CCACACCGGC CCGCTCACGC ACGCGCATTG GCCCATGAAT 
CCGCTGCGCG GCCAGTTGGC CTGGGGCCTG CATGCCCAGG CTCCCGCGGG CGCCCCCTGG 
CCGCCCCAGC CGGTCAATGG CAACGGCAAC CTGGTGCCCC GTGTGCCGCT GCAGGGTGGC 
GCAGGCTGGG TGCTGGGCTC CACGTTCGAG CGCCTGAAGA CCGCCCTGCC CCCCAGCCCT 
GACGACCAAG CCAAGGGCTT GGCCACCAAT CAGGCCAAAC TGCACGCGCT GCTGCCCCCC 
CTGGGCGTTG CCATGGACGC CGCCTTCACC CAGGCCGTCA CCGCGCCGGA CGGCCCCGTG 
CGCACCTGGG CGGCGGTGCG CTGCGGTGCG CTGGACCGCC GCCCCATCGT GGGGCCGGTG 
GACTCGGTGC GCCAGCCCGG CCTGTGGCTG TGCACTGCCA TGGGCGCGCG CGGGCTCACG 
CTGTCATTGC TGTGCGGCGA ACTGATCGCC GCGCGGCTGC ACAGTGAGCC CCTGCCGCTG 
GACGCCCCTC TGGCGCGCGC GTTGAGCAGC GAGCGCTGGC TAGGATATGA GCCACAGTGA 

 

Protein sequence

MSEPIEWLED GTPYSPRFSD RYHSEQGGLE QARGTFLAGC GLPQAWQNQP QWRVLETGFG 
LGLNFLVTWA AWRADPHRPQ RLHFVSCEAW PVSAADLLRA APIDSTLQSL AQQLAAQYWG 
LLPGVHRLSF DGGQVLLTLY IGDAQALLRQ QQPTADSVYL DGFDPQHNPQ MWDIHTLKAV 
ARCCRRGTRL ATWTVARGVR DGLVQCGFEV QKVPGVRPKR DNLQATYAPR WEPRAGQPVL 
PDATVAAPAR CLVVGAGLAG AAVAASLAHR GWQVQVLDQA DHPAAGASGL PAGVFAPNVS 
QDDNLISRLS RAGVRTTLNT LAQLPAETRG TDWSVCGTLE HRVDGTTGLA WSDGPGLDWS 
RPATPAQLQA NGLSADTVAC WHEHAGWVRP PQLIAHLLND PAIHWRGSAA VAELRRTTVD 
GQPLWQALDA EGRVLAEAEL AVVCAGHHTG PLTHAHWPMN PLRGQLAWGL HAQAPAGAPW 
PPQPVNGNGN LVPRVPLQGG AGWVLGSTFE RLKTALPPSP DDQAKGLATN QAKLHALLPP 
LGVAMDAAFT QAVTAPDGPV RTWAAVRCGA LDRRPIVGPV DSVRQPGLWL CTAMGARGLT 
LSLLCGELIA ARLHSEPLPL DAPLARALSS ERWLGYEPQ