152 homologs were found in PanDaTox collection
for query gene Cpin_3563 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_3563  protein of unknown function DUF752  100 
 
 
223 aa  462  1e-129  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0158975  normal  0.127143 
 
 
-
 
NC_013162  Coch_1602  protein of unknown function DUF752  45.58 
 
 
220 aa  202  3e-51  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_3871  protein of unknown function DUF752  46.19 
 
 
226 aa  193  2e-48  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.418241  normal 
 
 
-
 
NC_013730  Slin_4488  protein of unknown function DUF752  48.2 
 
 
223 aa  188  5.999999999999999e-47  Spirosoma linguale DSM 74  Bacteria  normal  0.0144966  normal  0.226664 
 
 
-
 
NC_009092  Shew_3321  hypothetical protein  44.49 
 
 
257 aa  188  7e-47  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_07050  hypothetical protein  42.73 
 
 
226 aa  187  1e-46  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_3099  hypothetical protein  45.65 
 
 
230 aa  184  1.0000000000000001e-45  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0626942 
 
 
-
 
NC_002950  PG2146  hypothetical protein  42.73 
 
 
251 aa  180  2e-44  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_008255  CHU_0640  hypothetical protein  43.38 
 
 
227 aa  179  2e-44  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00000640329  normal  0.493062 
 
 
-
 
NC_009441  Fjoh_4769  hypothetical protein  41.44 
 
 
221 aa  179  2.9999999999999997e-44  Flavobacterium johnsoniae UW101  Bacteria  normal  0.497303  n/a   
 
 
-
 
NC_010506  Swoo_4256  hypothetical protein  40.81 
 
 
227 aa  174  9e-43  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00000473463  hitchhiker  0.0000809329 
 
 
-
 
NC_013061  Phep_1235  protein of unknown function DUF752  40.18 
 
 
226 aa  143  3e-33  Pedobacter heparinus DSM 2366  Bacteria  normal  0.887893  normal 
 
 
-
 
NC_008686  Pden_2336  hypothetical protein  31.55 
 
 
218 aa  93.2  3e-18  Paracoccus denitrificans PD1222  Bacteria  normal  0.0305292  normal 
 
 
-
 
NC_008025  Dgeo_1456  hypothetical protein  32.74 
 
 
225 aa  89.4  4e-17  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.439461  normal  0.0456624 
 
 
-
 
NC_009428  Rsph17025_0142  hypothetical protein  33.33 
 
 
242 aa  87.8  1e-16  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2732  5-methylaminomethyl-2-thiouridine methyltransferase  30.99 
 
 
666 aa  85.9  4e-16  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2621  5-methylaminomethyl-2-thiouridine methyltransferase  30.83 
 
 
666 aa  85.9  5e-16  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.00000350397 
 
 
-
 
NC_008816  A9601_06681  hypothetical protein  27.09 
 
 
294 aa  85.5  6e-16  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.245122  n/a   
 
 
-
 
NC_011094  SeSA_A2608  5-methylaminomethyl-2-thiouridine methyltransferase  31.12 
 
 
666 aa  85.1  7e-16  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2519  5-methylaminomethyl-2-thiouridine methyltransferase  30.83 
 
 
666 aa  85.1  8e-16  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2850  5-methylaminomethyl-2-thiouridine methyltransferase  31.12 
 
 
644 aa  84.7  0.000000000000001  Dechloromonas aromatica RCB  Bacteria  normal  0.413253  normal  0.437245 
 
 
-
 
NC_011080  SNSL254_A2568  5-methylaminomethyl-2-thiouridine methyltransferase  30.42 
 
 
666 aa  84  0.000000000000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.580805  normal 
 
 
-
 
NC_009708  YpsIP31758_1410  5-methylaminomethyl-2-thiouridine methyltransferase  29.63 
 
 
689 aa  83.6  0.000000000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000203784  n/a   
 
 
-
 
NC_009801  EcE24377A_2619  5-methylaminomethyl-2-thiouridine methyltransferase  30.58 
 
 
668 aa  84  0.000000000000002  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A0372  5-methylaminomethyl-2-thiouridine methyltransferase  29.63 
 
 
689 aa  83.6  0.000000000000002  Yersinia pestis Angola  Bacteria  hitchhiker  0.000353518  normal 
 
 
-
 
NC_010465  YPK_1519  5-methylaminomethyl-2-thiouridine methyltransferase  29.63 
 
 
689 aa  83.6  0.000000000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0252518  n/a   
 
 
-
 
NC_011353  ECH74115_3465  5-methylaminomethyl-2-thiouridine methyltransferase  29.75 
 
 
668 aa  82.8  0.000000000000004  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009091  P9301_06381  hypothetical protein  27.49 
 
 
303 aa  82  0.000000000000006  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1328  5-methylaminomethyl-2-thiouridine methyltransferase  30.17 
 
 
668 aa  81.6  0.000000000000009  Escherichia coli ATCC 8739  Bacteria  normal  0.831924  normal 
 
 
-
 
NC_009800  EcHS_A2475  5-methylaminomethyl-2-thiouridine methyltransferase  30.17 
 
 
668 aa  81.6  0.000000000000009  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02249  hypothetical protein  30.33 
 
 
668 aa  80.9  0.00000000000001  Escherichia coli BL21(DE3)  Bacteria  normal  0.425785  n/a   
 
 
-
 
CP001637  EcDH1_1332  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  30.17 
 
 
668 aa  81.3  0.00000000000001  Escherichia coli DH1  Bacteria  normal  0.602375  n/a   
 
 
-
 
NC_007577  PMT9312_0612  hypothetical protein  27.91 
 
 
301 aa  80.9  0.00000000000001  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.930586  n/a   
 
 
-
 
NC_007802  Jann_0140  hypothetical protein  30.14 
 
 
218 aa  81.3  0.00000000000001  Jannaschia sp. CCS1  Bacteria  normal  0.946459  normal 
 
 
-
 
NC_007951  Bxe_A4505  5-methylaminomethyl-2-thiouridine methyltransferase  29.25 
 
 
656 aa  81.3  0.00000000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_2481  5-methylaminomethyl-2-thiouridine methyltransferase  29.66 
 
 
668 aa  81.3  0.00000000000001  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E2702  5-methylaminomethyl-2-thiouridine methyltransferase  30.17 
 
 
668 aa  81.3  0.00000000000001  Shigella boydii CDC 3083-94  Bacteria  normal  0.673186  n/a   
 
 
-
 
NC_012892  B21_02209  hypothetical protein  30.33 
 
 
668 aa  80.9  0.00000000000001  Escherichia coli BL21  Bacteria  normal  0.334228  n/a   
 
 
-
 
NC_009620  Smed_4486  hypothetical protein  30.24 
 
 
241 aa  79.7  0.00000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_1989  hypothetical protein  27.06 
 
 
739 aa  78.2  0.00000000000009  Psychrobacter sp. PRwf-1  Bacteria  normal  decreased coverage  0.000136918 
 
 
-
 
NC_009439  Pmen_3230  5-methylaminomethyl-2-thiouridine methyltransferase  30.59 
 
 
657 aa  78.2  0.0000000000001  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_1833  protein of unknown function DUF752  31.56 
 
 
229 aa  77.4  0.0000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  0.253186  normal 
 
 
-
 
NC_012560  Avin_34940  5-methylaminomethyl-2-thiouridine methyltransferase  31.39 
 
 
653 aa  77.4  0.0000000000002  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3932  5-methylaminomethyl-2-thiouridine methyltransferase  29.91 
 
 
656 aa  77.4  0.0000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1887  5-methylaminomethyl-2-thiouridine methyltransferase  29.83 
 
 
672 aa  76.6  0.0000000000003  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0147  hypothetical protein  29.56 
 
 
227 aa  76.6  0.0000000000003  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00930427  normal 
 
 
-
 
NC_009436  Ent638_2872  5-methylaminomethyl-2-thiouridine methyltransferase  31.09 
 
 
666 aa  76.3  0.0000000000004  Enterobacter sp. 638  Bacteria  normal  0.715577  normal  0.0703666 
 
 
-
 
NC_009952  Dshi_0152  protein of unknown function DUF752  29.33 
 
 
230 aa  75.9  0.0000000000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1927  hypothetical protein  31.75 
 
 
617 aa  75.9  0.0000000000005  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.224364  n/a   
 
 
-
 
NC_009049  Rsph17029_2539  hypothetical protein  29.95 
 
 
266 aa  75.9  0.0000000000005  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0656342  normal 
 
 
-
 
NC_007347  Reut_A1378  5-methylaminomethyl-2-thiouridine methyltransferase  30.09 
 
 
668 aa  75.5  0.0000000000006  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2891  protein of unknown function DUF752  31.44 
 
 
240 aa  75.1  0.0000000000009  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0866147  normal  0.0591468 
 
 
-
 
NC_007493  RSP_0879  hypothetical protein  30.77 
 
 
266 aa  75.1  0.0000000000009  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3369  5-methylaminomethyl-2-thiouridine methyltransferase  29.13 
 
 
673 aa  75.1  0.0000000000009  Serratia proteamaculans 568  Bacteria  decreased coverage  0.00235092  normal 
 
 
-
 
NC_009654  Mmwyl1_3401  hypothetical protein  29.15 
 
 
674 aa  74.7  0.000000000001  Marinomonas sp. MWYL1  Bacteria  normal  0.473665  normal 
 
 
-
 
NC_011989  Avi_3359  hypothetical protein  31.84 
 
 
219 aa  74.3  0.000000000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1538  5-methylaminomethyl-2-thiouridine methyltransferase  30.3 
 
 
672 aa  73.9  0.000000000002  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0998844 
 
 
-
 
NC_009783  VIBHAR_03106  5-methylaminomethyl-2-thiouridine methyltransferase  27.52 
 
 
672 aa  73.9  0.000000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012912  Dd1591_1358  5-methylaminomethyl-2-thiouridine methyltransferase  30.16 
 
 
672 aa  73.2  0.000000000003  Dickeya zeae Ech1591  Bacteria  normal  0.0608182  n/a   
 
 
-
 
NC_009457  VC0395_A1694  5-methylaminomethyl-2-thiouridine methyltransferase  30 
 
 
674 aa  73.2  0.000000000003  Vibrio cholerae O395  Bacteria  hitchhiker  0.00252388  n/a   
 
 
-
 
NC_010084  Bmul_0067  5-methylaminomethyl-2-thiouridine methyltransferase  28.38 
 
 
657 aa  73.6  0.000000000003  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_3384  hypothetical protein  31.43 
 
 
705 aa  72.8  0.000000000004  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002869  5-methylaminomethyl-2-thiouridine-forming enzyme MnmC  28.31 
 
 
672 aa  71.6  0.00000000001  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00103068  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0757  protein of unknown function DUF752  26.03 
 
 
500 aa  70.9  0.00000000001  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1076  protein of unknown function DUF752  30.15 
 
 
619 aa  70.5  0.00000000002  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.506712  normal 
 
 
-
 
NC_007513  Syncc9902_1327  hypothetical protein  28.32 
 
 
330 aa  70.1  0.00000000003  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_3066  5-methylaminomethyl-2-thiouridine methyltransferase  28.5 
 
 
655 aa  70.1  0.00000000003  Burkholderia phymatum STM815  Bacteria  normal  normal  0.16811 
 
 
-
 
NC_008740  Maqu_1170  hypothetical protein  31.16 
 
 
631 aa  69.7  0.00000000003  Marinobacter aquaeolei VT8  Bacteria  normal  0.285143  n/a   
 
 
-
 
NC_006348  BMA2914  5-methylaminomethyl-2-thiouridine methyltransferase  27.83 
 
 
660 aa  69.3  0.00000000004  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0217  5-methylaminomethyl-2-thiouridine methyltransferase  27.83 
 
 
660 aa  69.3  0.00000000004  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3155  protein of unknown function DUF752  29.29 
 
 
238 aa  69.3  0.00000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.326369 
 
 
-
 
NC_010501  PputW619_1359  5-methylaminomethyl-2-thiouridine methyltransferase  29.91 
 
 
657 aa  69.3  0.00000000004  Pseudomonas putida W619  Bacteria  normal  0.490609  normal  0.307096 
 
 
-
 
NC_003295  RSc1709  5-methylaminomethyl-2-thiouridine methyltransferase  27.7 
 
 
657 aa  69.3  0.00000000005  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0318232 
 
 
-
 
NC_002947  PP_1751  5-methylaminomethyl-2-thiouridine methyltransferase  28.37 
 
 
654 aa  68.9  0.00000000006  Pseudomonas putida KT2440  Bacteria  normal  0.266449  normal 
 
 
-
 
NC_008781  Pnap_2424  hypothetical protein  28.87 
 
 
637 aa  68.9  0.00000000006  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3742  5-methylaminomethyl-2-thiouridine methyltransferase  28.93 
 
 
665 aa  68.6  0.00000000007  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  decreased coverage  0.0063824 
 
 
-
 
NC_013421  Pecwa_1458  5-methylaminomethyl-2-thiouridine methyltransferase  30.11 
 
 
675 aa  68.6  0.00000000007  Pectobacterium wasabiae WPP163  Bacteria  normal  0.622829  n/a   
 
 
-
 
NC_007604  Synpcc7942_1941  hypothetical protein  28 
 
 
298 aa  68.6  0.00000000008  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1343  5-methylaminomethyl-2-thiouridine methyltransferase  27.91 
 
 
654 aa  68.6  0.00000000008  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2377  hypothetical protein  30.11 
 
 
667 aa  68.2  0.00000000009  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.954774 
 
 
-
 
NC_011662  Tmz1t_1956  5-methylaminomethyl-2-thiouridine methyltransferase  28.64 
 
 
644 aa  67.8  0.0000000001  Thauera sp. MZ1T  Bacteria  normal  0.243551  n/a   
 
 
-
 
NC_010682  Rpic_1871  5-methylaminomethyl-2-thiouridine methyltransferase  29.61 
 
 
672 aa  68.2  0.0000000001  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0302238 
 
 
-
 
NC_008820  P9303_18881  hypothetical protein  24.06 
 
 
313 aa  67.8  0.0000000001  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.299649 
 
 
-
 
NC_009512  Pput_3963  5-methylaminomethyl-2-thiouridine methyltransferase  28.37 
 
 
654 aa  67.4  0.0000000001  Pseudomonas putida F1  Bacteria  normal  0.94523  normal  0.0279642 
 
 
-
 
NC_007335  PMN2A_0048  SAM-dependent methyltransferase  28.38 
 
 
298 aa  67  0.0000000002  Prochlorococcus marinus str. NATL2A  Bacteria  normal  0.62416  n/a   
 
 
-
 
NC_007651  BTH_I0003  5-methylaminomethyl-2-thiouridine methyltransferase  27.11 
 
 
657 aa  67  0.0000000002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_0559  hypothetical protein  27.83 
 
 
300 aa  67  0.0000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_1933  hypothetical protein  27.59 
 
 
254 aa  66.2  0.0000000003  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1737  hypothetical protein  27.95 
 
 
225 aa  66.2  0.0000000003  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_008836  BMA10229_A1628  5-methylaminomethyl-2-thiouridine methyltransferase  27.83 
 
 
711 aa  66.6  0.0000000003  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0003  5-methylaminomethyl-2-thiouridine methyltransferase  27.83 
 
 
711 aa  66.6  0.0000000003  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2973  5-methylaminomethyl-2-thiouridine methyltransferase  27.83 
 
 
711 aa  66.6  0.0000000003  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2586  5-methylaminomethyl-2-thiouridine methyltransferase  28.87 
 
 
675 aa  66.2  0.0000000003  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1639  oxidoreductase, FAD-binding protein  27.03 
 
 
660 aa  65.9  0.0000000005  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.562541  n/a   
 
 
-
 
NC_008817  P9515_06771  hypothetical protein  25.73 
 
 
297 aa  65.9  0.0000000005  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0003  5-methylaminomethyl-2-thiouridine methyltransferase  28.18 
 
 
708 aa  65.9  0.0000000005  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_1208  5-methylaminomethyl-2-thiouridine methyltransferase  26.59 
 
 
612 aa  65.5  0.0000000006  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.308297  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3396  5-methylaminomethyl-2-thiouridine methyltransferase  28.18 
 
 
708 aa  65.5  0.0000000006  Burkholderia mallei SAVP1  Bacteria  normal  0.145892  n/a   
 
 
-
 
NC_011901  Tgr7_1861  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  29.21 
 
 
661 aa  65.5  0.0000000007  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_06691  hypothetical protein  28.84 
 
 
298 aa  65.5  0.0000000007  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.194908  normal 
 
 
-
 
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