150 homologs were found in PanDaTox collection
for query gene Dgeo_1456 on replicon NC_008025
Organism: Deinococcus geothermalis DSM 11300



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008025  Dgeo_1456  hypothetical protein  100 
 
 
225 aa  445  1.0000000000000001e-124  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.439461  normal  0.0456624 
 
 
-
 
NC_014212  Mesil_1833  protein of unknown function DUF752  46.9 
 
 
229 aa  183  2.0000000000000003e-45  Meiothermus silvanus DSM 9946  Bacteria  normal  0.253186  normal 
 
 
-
 
NC_013946  Mrub_1737  hypothetical protein  50.73 
 
 
225 aa  172  2.9999999999999996e-42  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_002950  PG2146  hypothetical protein  36.99 
 
 
251 aa  122  3e-27  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013061  Phep_1235  protein of unknown function DUF752  32.88 
 
 
226 aa  123  3e-27  Pedobacter heparinus DSM 2366  Bacteria  normal  0.887893  normal 
 
 
-
 
NC_014230  CA2559_07050  hypothetical protein  33.04 
 
 
226 aa  123  3e-27  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4769  hypothetical protein  30.18 
 
 
221 aa  116  1.9999999999999998e-25  Flavobacterium johnsoniae UW101  Bacteria  normal  0.497303  n/a   
 
 
-
 
NC_009092  Shew_3321  hypothetical protein  33.48 
 
 
257 aa  112  4.0000000000000004e-24  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2336  hypothetical protein  41.46 
 
 
218 aa  109  4.0000000000000004e-23  Paracoccus denitrificans PD1222  Bacteria  normal  0.0305292  normal 
 
 
-
 
NC_013162  Coch_1602  protein of unknown function DUF752  31.51 
 
 
220 aa  108  7.000000000000001e-23  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1378  5-methylaminomethyl-2-thiouridine methyltransferase  38.96 
 
 
668 aa  107  1e-22  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0142  hypothetical protein  37.09 
 
 
242 aa  103  3e-21  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2850  5-methylaminomethyl-2-thiouridine methyltransferase  36.97 
 
 
644 aa  102  4e-21  Dechloromonas aromatica RCB  Bacteria  normal  0.413253  normal  0.437245 
 
 
-
 
NC_012791  Vapar_2983  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  38.25 
 
 
620 aa  101  8e-21  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4256  hypothetical protein  30.49 
 
 
227 aa  101  1e-20  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00000473463  hitchhiker  0.0000809329 
 
 
-
 
NC_007493  RSP_0879  hypothetical protein  37.67 
 
 
266 aa  100  2e-20  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2539  hypothetical protein  36.74 
 
 
266 aa  100  2e-20  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0656342  normal 
 
 
-
 
NC_007973  Rmet_1887  5-methylaminomethyl-2-thiouridine methyltransferase  39.01 
 
 
672 aa  99  5e-20  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0140  hypothetical protein  35.71 
 
 
218 aa  99  6e-20  Jannaschia sp. CCS1  Bacteria  normal  0.946459  normal 
 
 
-
 
NC_012856  Rpic12D_1538  5-methylaminomethyl-2-thiouridine methyltransferase  36.94 
 
 
672 aa  98.6  7e-20  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0998844 
 
 
-
 
NC_008700  Sama_3099  hypothetical protein  33.19 
 
 
230 aa  97.4  1e-19  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0626942 
 
 
-
 
NC_003295  RSc1709  5-methylaminomethyl-2-thiouridine methyltransferase  38.22 
 
 
657 aa  97.4  2e-19  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0318232 
 
 
-
 
NC_013730  Slin_4488  protein of unknown function DUF752  29.41 
 
 
223 aa  96.7  2e-19  Spirosoma linguale DSM 74  Bacteria  normal  0.0144966  normal  0.226664 
 
 
-
 
NC_011662  Tmz1t_1956  5-methylaminomethyl-2-thiouridine methyltransferase  37.72 
 
 
644 aa  96.7  2e-19  Thauera sp. MZ1T  Bacteria  normal  0.243551  n/a   
 
 
-
 
NC_009620  Smed_4486  hypothetical protein  35.65 
 
 
241 aa  96.7  3e-19  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0152  protein of unknown function DUF752  37.32 
 
 
230 aa  96.3  3e-19  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1861  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  35.62 
 
 
661 aa  95.9  5e-19  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1964  hypothetical protein  40.35 
 
 
653 aa  95.1  8e-19  Methylibium petroleiphilum PM1  Bacteria  normal  0.117707  normal 
 
 
-
 
NC_008752  Aave_3048  hypothetical protein  38.39 
 
 
635 aa  94.7  1e-18  Acidovorax citrulli AAC00-1  Bacteria  normal  0.115559  normal  0.0258128 
 
 
-
 
NC_008044  TM1040_0147  hypothetical protein  36.62 
 
 
227 aa  94  2e-18  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00930427  normal 
 
 
-
 
NC_007908  Rfer_3653  hypothetical protein  37.78 
 
 
249 aa  92.4  5e-18  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2891  protein of unknown function DUF752  33.49 
 
 
240 aa  92  7e-18  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0866147  normal  0.0591468 
 
 
-
 
NC_010622  Bphy_3066  5-methylaminomethyl-2-thiouridine methyltransferase  35.91 
 
 
655 aa  91.7  9e-18  Burkholderia phymatum STM815  Bacteria  normal  normal  0.16811 
 
 
-
 
NC_008816  A9601_06681  hypothetical protein  28.24 
 
 
294 aa  90.1  2e-17  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.245122  n/a   
 
 
-
 
NC_011083  SeHA_C2621  5-methylaminomethyl-2-thiouridine methyltransferase  33.48 
 
 
666 aa  90.5  2e-17  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.00000350397 
 
 
-
 
NC_010682  Rpic_1871  5-methylaminomethyl-2-thiouridine methyltransferase  37.66 
 
 
672 aa  90.1  3e-17  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0302238 
 
 
-
 
NC_011149  SeAg_B2519  5-methylaminomethyl-2-thiouridine methyltransferase  33.48 
 
 
666 aa  89.4  4e-17  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2377  hypothetical protein  35.09 
 
 
667 aa  89.4  4e-17  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.954774 
 
 
-
 
NC_013132  Cpin_3563  protein of unknown function DUF752  32.74 
 
 
223 aa  89.4  4e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0158975  normal  0.127143 
 
 
-
 
NC_009091  P9301_06381  hypothetical protein  27.78 
 
 
303 aa  89.4  4e-17  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02249  hypothetical protein  33.33 
 
 
668 aa  89  5e-17  Escherichia coli BL21(DE3)  Bacteria  normal  0.425785  n/a   
 
 
-
 
NC_012892  B21_02209  hypothetical protein  33.33 
 
 
668 aa  89  5e-17  Escherichia coli BL21  Bacteria  normal  0.334228  n/a   
 
 
-
 
NC_007951  Bxe_A4505  5-methylaminomethyl-2-thiouridine methyltransferase  35.16 
 
 
656 aa  89  5e-17  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3230  5-methylaminomethyl-2-thiouridine methyltransferase  35.91 
 
 
657 aa  89  5e-17  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007577  PMT9312_0612  hypothetical protein  27.78 
 
 
301 aa  89  6e-17  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.930586  n/a   
 
 
-
 
NC_011080  SNSL254_A2568  5-methylaminomethyl-2-thiouridine methyltransferase  33.04 
 
 
666 aa  89  6e-17  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.580805  normal 
 
 
-
 
NC_012912  Dd1591_1358  5-methylaminomethyl-2-thiouridine methyltransferase  34.96 
 
 
672 aa  88.6  6e-17  Dickeya zeae Ech1591  Bacteria  normal  0.0608182  n/a   
 
 
-
 
NC_008255  CHU_0640  hypothetical protein  26.79 
 
 
227 aa  88.6  7e-17  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00000640329  normal  0.493062 
 
 
-
 
NC_008781  Pnap_2424  hypothetical protein  35.51 
 
 
637 aa  88.6  7e-17  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008817  P9515_06771  hypothetical protein  25.46 
 
 
297 aa  88.6  7e-17  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1332  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  33.33 
 
 
668 aa  88.6  8e-17  Escherichia coli DH1  Bacteria  normal  0.602375  n/a   
 
 
-
 
NC_009800  EcHS_A2475  5-methylaminomethyl-2-thiouridine methyltransferase  33.33 
 
 
668 aa  88.6  8e-17  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E2702  5-methylaminomethyl-2-thiouridine methyltransferase  33.33 
 
 
668 aa  88.2  8e-17  Shigella boydii CDC 3083-94  Bacteria  normal  0.673186  n/a   
 
 
-
 
NC_010468  EcolC_1328  5-methylaminomethyl-2-thiouridine methyltransferase  33.33 
 
 
668 aa  88.6  8e-17  Escherichia coli ATCC 8739  Bacteria  normal  0.831924  normal 
 
 
-
 
NC_010498  EcSMS35_2481  5-methylaminomethyl-2-thiouridine methyltransferase  33.33 
 
 
668 aa  88.6  8e-17  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_3465  5-methylaminomethyl-2-thiouridine methyltransferase  33.33 
 
 
668 aa  88.2  9e-17  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2732  5-methylaminomethyl-2-thiouridine methyltransferase  33.04 
 
 
666 aa  88.2  9e-17  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2608  5-methylaminomethyl-2-thiouridine methyltransferase  33.19 
 
 
666 aa  88.2  1e-16  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_1941  hypothetical protein  32.05 
 
 
298 aa  87.4  1e-16  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1927  hypothetical protein  33.95 
 
 
617 aa  87.8  1e-16  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.224364  n/a   
 
 
-
 
NC_008309  HS_0664  5-methylaminomethyl-2-thiouridine methyltransferase  28.88 
 
 
676 aa  88.2  1e-16  Haemophilus somnus 129PT  Bacteria  normal  0.0436264  n/a   
 
 
-
 
NC_012850  Rleg_3155  protein of unknown function DUF752  33.64 
 
 
238 aa  87.8  1e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.326369 
 
 
-
 
NC_009801  EcE24377A_2619  5-methylaminomethyl-2-thiouridine methyltransferase  33.33 
 
 
668 aa  87.8  1e-16  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3359  hypothetical protein  33.8 
 
 
219 aa  87.4  2e-16  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0003  5-methylaminomethyl-2-thiouridine methyltransferase  34.65 
 
 
657 aa  87.4  2e-16  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1458  5-methylaminomethyl-2-thiouridine methyltransferase  31.58 
 
 
675 aa  87  2e-16  Pectobacterium wasabiae WPP163  Bacteria  normal  0.622829  n/a   
 
 
-
 
NC_008782  Ajs_1796  hypothetical protein  34.1 
 
 
639 aa  86.3  3e-16  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2806  5-methylaminomethyl-2-thiouridine methyltransferase  30.54 
 
 
675 aa  85.9  4e-16  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.641074  n/a   
 
 
-
 
NC_009708  YpsIP31758_1410  5-methylaminomethyl-2-thiouridine methyltransferase  31.14 
 
 
689 aa  86.3  4e-16  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000203784  n/a   
 
 
-
 
NC_010159  YpAngola_A0372  5-methylaminomethyl-2-thiouridine methyltransferase  31.14 
 
 
689 aa  86.3  4e-16  Yersinia pestis Angola  Bacteria  hitchhiker  0.000353518  normal 
 
 
-
 
NC_010465  YPK_1519  5-methylaminomethyl-2-thiouridine methyltransferase  31.14 
 
 
689 aa  86.3  4e-16  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0252518  n/a   
 
 
-
 
NC_013037  Dfer_3871  protein of unknown function DUF752  31.3 
 
 
226 aa  85.9  5e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.418241  normal 
 
 
-
 
NC_010681  Bphyt_3932  5-methylaminomethyl-2-thiouridine methyltransferase  35.62 
 
 
656 aa  85.9  5e-16  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A3396  5-methylaminomethyl-2-thiouridine methyltransferase  35.06 
 
 
708 aa  85.9  5e-16  Burkholderia mallei SAVP1  Bacteria  normal  0.145892  n/a   
 
 
-
 
NC_009074  BURPS668_0003  5-methylaminomethyl-2-thiouridine methyltransferase  35.06 
 
 
708 aa  85.9  5e-16  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0217  5-methylaminomethyl-2-thiouridine methyltransferase  34.62 
 
 
660 aa  84.7  9e-16  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2914  5-methylaminomethyl-2-thiouridine methyltransferase  34.62 
 
 
660 aa  84.7  0.000000000000001  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1628  5-methylaminomethyl-2-thiouridine methyltransferase  34.62 
 
 
711 aa  84.7  0.000000000000001  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0003  5-methylaminomethyl-2-thiouridine methyltransferase  34.62 
 
 
711 aa  84.7  0.000000000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2973  5-methylaminomethyl-2-thiouridine methyltransferase  34.62 
 
 
711 aa  84.7  0.000000000000001  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1926  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  33.64 
 
 
639 aa  83.6  0.000000000000002  Acidovorax ebreus TPSY  Bacteria  normal  0.218262  n/a   
 
 
-
 
NC_007516  Syncc9605_1130  hypothetical protein  32.3 
 
 
305 aa  84  0.000000000000002  Synechococcus sp. CC9605  Bacteria  normal  0.398385  normal 
 
 
-
 
NC_008228  Patl_3384  hypothetical protein  27.94 
 
 
705 aa  84  0.000000000000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1170  hypothetical protein  32.3 
 
 
631 aa  84  0.000000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  0.285143  n/a   
 
 
-
 
NC_009832  Spro_3369  5-methylaminomethyl-2-thiouridine methyltransferase  34.65 
 
 
673 aa  83.2  0.000000000000003  Serratia proteamaculans 568  Bacteria  decreased coverage  0.00235092  normal 
 
 
-
 
NC_012560  Avin_34940  5-methylaminomethyl-2-thiouridine methyltransferase  35.87 
 
 
653 aa  82.4  0.000000000000005  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2054  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  36.32 
 
 
655 aa  82.4  0.000000000000006  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00149668 
 
 
-
 
NC_007963  Csal_0704  hypothetical protein  34.84 
 
 
699 aa  81.6  0.000000000000008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2586  5-methylaminomethyl-2-thiouridine methyltransferase  30.74 
 
 
675 aa  82  0.000000000000008  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4098  5-methylaminomethyl-2-thiouridine methyltransferase  31.48 
 
 
659 aa  81.3  0.00000000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2343  hypothetical protein  33.64 
 
 
637 aa  81.3  0.00000000000001  Polaromonas sp. JS666  Bacteria  normal  0.955559  normal 
 
 
-
 
NC_008312  Tery_0559  hypothetical protein  32.84 
 
 
300 aa  81.6  0.00000000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_009714  CHAB381_1277  5-methylaminomethyl-2-thiouridine methyltransferase  26.92 
 
 
667 aa  81.3  0.00000000000001  Campylobacter hominis ATCC BAA-381  Bacteria  normal  0.0226023  n/a   
 
 
-
 
NC_009436  Ent638_2872  5-methylaminomethyl-2-thiouridine methyltransferase  32.33 
 
 
666 aa  80.5  0.00000000000002  Enterobacter sp. 638  Bacteria  normal  0.715577  normal  0.0703666 
 
 
-
 
NC_008463  PA14_19400  5-methylaminomethyl-2-thiouridine methyltransferase  30.34 
 
 
654 aa  79.7  0.00000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0825831  normal 
 
 
-
 
NC_010084  Bmul_0067  5-methylaminomethyl-2-thiouridine methyltransferase  33.77 
 
 
657 aa  79.7  0.00000000000003  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4644  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  33.19 
 
 
645 aa  79.3  0.00000000000004  Delftia acidovorans SPH-1  Bacteria  normal  0.683342  hitchhiker  0.0000257745 
 
 
-
 
NC_013889  TK90_1076  protein of unknown function DUF752  29.57 
 
 
619 aa  79.3  0.00000000000005  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.506712  normal 
 
 
-
 
NC_007947  Mfla_1390  hypothetical protein  35.75 
 
 
622 aa  78.6  0.00000000000007  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.909333 
 
 
-
 
NC_007513  Syncc9902_1327  hypothetical protein  32.49 
 
 
330 aa  77.8  0.0000000000001  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
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