Gene Lcho_2054 details

Gene Information

• Locus tag: Lcho_2054
• ID: 6160590
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 2232546
• End bp: 2234513
• Gene Length: 1968 bp
• Protein Length: 655 aa
• Translation table: 11
• GC content: 76%
• IMG OID: 641664823
• Product: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC
• Protein accession: YP_001791086
• Protein GI: 171058737
• COG category: [S] Function unknown
• COG ID: [COG4121] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 0.00149668
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

GTGCGACGCT CCAACCCGAT CACCCCCGCC CGCCTGGGCC GCAGCGCCGA GGGCCTGCCG 
TTCTCCGAGG ATTTCGGTGC GCCTTACCAC CCTTCGGCGG GCGCGCTGGC GCAGGCCGAG 
CAGGTGTTCC TGCGCGGCAC CGATCTGCCC GCACGCTGGG CCGGGCAGGC GCGGCACGTG 
ATCCTCGAGA CCGGCTTCGG CCTCGGCCAC AACTTCCTCG CCACATGGGC GGCCTGGCGG 
CGCGATCCGC GGCGCTGCGA GCGGCTGGTC TACCTGGCGA TCGACAAGCA CCCGCCGGCC 
CCCGCCGACC TGGCCGACGT GCACCGCGAC AGTCCGCTCG CCGATCTGGC CGCGCAGCTC 
ATCGCCGCCT GGCCGCTGGC CACGCCGGAT CTGCACCTGC TCGATTTCGA GGGCGGCCGG 
GTGCAGCTGA TGCTGGCCCT GGGCGACATC CACGACGTGC TTCCGGGCCT GCAGGCCGAG 
GCGCACAGCC TCTACCTCGA CGGCTTCGTA CCCGCCCGCA ATCCGGCGAT GTGGTCGGCC 
GACGTGTTCA AGCGCATCGC CCGCCTGGCT GCGCCCGGCG CGATGGCCGC GAGCGGGCAC 
GCGGACAGCG CGGTGCGCGA CGGGCTGGTG CGGCAGGGGT TCGAGGTGCG TGCCACCGGC 
GCGGACGCCA CGGTGGCCCG CTACGCGCCG CGCTTTCAGC CCGAGCCGCC GCGTGGTTGG 
CGATGGCCGC ACGCCGCCGC CCGCGAGGCG CTGGTGATCG GTGGTGGCCT GGCCGGCTGC 
GCGGTGGCGC AGGCACTGGC GCTGCAGGGC TGGCGATCGA CCGTGATCGA CCGCCAGGCC 
GGGCCGGCGC AGGAAACCTC CGGCAACGCC GGCGGCCTGA TGCACGGCAT CTTCAACGCA 
CCCGACAGCC CGCACGCGCG CTGGTTCCGG GCGGCGGCGA TGCACACCGC GCGCAACGCA 
GCGGCCGGAC TGGCCGCGGG TGAGCTGGCC GGCACGCTGG CGGGTTTCCT GCGGCTGGAC 
GAGCGCCTCA ACACCACCCA GGCCGAGGCA CAGCTGAGTG CGGTCGGCCT GCCACGAGCC 
TGGCTGGCCT GGCTCGACGT GGCCGGCGCC CGGGCTGCCG CGGGCCTCGA ACTGCCGTGC 
GGCGCCTGGC ACTACGGCGC CGCCGGCTGG CTCGACCCGG CCGGCTACAG CCGCTGGATG 
CTGCAATCGG CCGGCGATTC GGCGCGCTGG ATCGGTGGCA CCGGAGTCGC CGCCTTGCGC 
GGCCCGCGTG ATGGCGCGGC CGACCACCAC GGCGGCTGGC AGGCGATCGA TCGCCACGGC 
CGCGTGATCG CCAGCGCGCC GGTGCTGGTG CTCGCCAACG CGCTCGACGC CGCCCGGCTG 
CTGCCGGCCC ACTGCCCGCC GCCGGGCCTG TCGGCGGTGC GCGGCCAGGT CACGCGCATC 
CCCGCCGGCA CGCCGGGGCT GCGGCCGCCG CGTCTGACCG TCGCCGGTCA GGGTTACGCG 
CTGCGGCTGG ACAACGGCGA CGTGCTGGTC GGCGCGACCA CGCAGGACGA ACCGGTCGGC 
ATCGACGGTG CGGCCTTGCG GCTGGCCGAT CAGCAGCGCA ACCTGCAACG CGCCGCCGGG 
CTGGGTGTGC TCGATGCCAC CGCAGCCGAA TTCGGCACCA CGCTGCTGCC CGGCCGGGCC 
GGCTGGCGCG CCGTCACCGC CGACCGCCTG CCGCTGGTCG GCCCGCCGAT CGATCTGGCG 
CAACTGGCGC AGGCGCGCGG CGGCCGGGTG CGGCTCGACG CCCATCGCCA TCAGCCGCGT 
TGTGTGGACG ATCGATCCGG CCTCTACCTG TGCACCGGCT TGGGCTCGCG CGGCATCACC 
AGCGCCGCGC TGGCCGGCCG GCTGCTGGCG GCCTGGGTGA GCGGCGCACC CGCGCCGGTG 
GACGCCGACC TGCGCAACGC GCTCGACCCG GCGCGCCTGT CGAAGTGA 

 

Protein sequence

MRRSNPITPA RLGRSAEGLP FSEDFGAPYH PSAGALAQAE QVFLRGTDLP ARWAGQARHV 
ILETGFGLGH NFLATWAAWR RDPRRCERLV YLAIDKHPPA PADLADVHRD SPLADLAAQL 
IAAWPLATPD LHLLDFEGGR VQLMLALGDI HDVLPGLQAE AHSLYLDGFV PARNPAMWSA 
DVFKRIARLA APGAMAASGH ADSAVRDGLV RQGFEVRATG ADATVARYAP RFQPEPPRGW 
RWPHAAAREA LVIGGGLAGC AVAQALALQG WRSTVIDRQA GPAQETSGNA GGLMHGIFNA 
PDSPHARWFR AAAMHTARNA AAGLAAGELA GTLAGFLRLD ERLNTTQAEA QLSAVGLPRA 
WLAWLDVAGA RAAAGLELPC GAWHYGAAGW LDPAGYSRWM LQSAGDSARW IGGTGVAALR 
GPRDGAADHH GGWQAIDRHG RVIASAPVLV LANALDAARL LPAHCPPPGL SAVRGQVTRI 
PAGTPGLRPP RLTVAGQGYA LRLDNGDVLV GATTQDEPVG IDGAALRLAD QQRNLQRAAG 
LGVLDATAAE FGTTLLPGRA GWRAVTADRL PLVGPPIDLA QLAQARGGRV RLDAHRHQPR 
CVDDRSGLYL CTGLGSRGIT SAALAGRLLA AWVSGAPAPV DADLRNALDP ARLSK