147 homologs were found in PanDaTox collection
for query gene CA2559_07050 on replicon NC_014230
Organism: Croceibacter atlanticus HTCC2559



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014230  CA2559_07050  hypothetical protein  100 
 
 
226 aa  471  1e-132  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4769  hypothetical protein  60.44 
 
 
221 aa  278  5e-74  Flavobacterium johnsoniae UW101  Bacteria  normal  0.497303  n/a   
 
 
-
 
NC_013162  Coch_1602  protein of unknown function DUF752  56.44 
 
 
220 aa  251  5.000000000000001e-66  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_3563  protein of unknown function DUF752  42.73 
 
 
223 aa  187  1e-46  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0158975  normal  0.127143 
 
 
-
 
NC_002950  PG2146  hypothetical protein  42.27 
 
 
251 aa  186  3e-46  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013037  Dfer_3871  protein of unknown function DUF752  41.82 
 
 
226 aa  176  3e-43  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.418241  normal 
 
 
-
 
NC_013061  Phep_1235  protein of unknown function DUF752  38.46 
 
 
226 aa  174  9.999999999999999e-43  Pedobacter heparinus DSM 2366  Bacteria  normal  0.887893  normal 
 
 
-
 
NC_013730  Slin_4488  protein of unknown function DUF752  38.77 
 
 
223 aa  169  4e-41  Spirosoma linguale DSM 74  Bacteria  normal  0.0144966  normal  0.226664 
 
 
-
 
NC_008255  CHU_0640  hypothetical protein  38.25 
 
 
227 aa  162  3e-39  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00000640329  normal  0.493062 
 
 
-
 
NC_008700  Sama_3099  hypothetical protein  37.61 
 
 
230 aa  149  5e-35  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0626942 
 
 
-
 
NC_009092  Shew_3321  hypothetical protein  35.19 
 
 
257 aa  147  2.0000000000000003e-34  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4256  hypothetical protein  35.37 
 
 
227 aa  146  2.0000000000000003e-34  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00000473463  hitchhiker  0.0000809329 
 
 
-
 
NC_008025  Dgeo_1456  hypothetical protein  33.04 
 
 
225 aa  123  3e-27  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.439461  normal  0.0456624 
 
 
-
 
NC_014212  Mesil_1833  protein of unknown function DUF752  29.78 
 
 
229 aa  103  3e-21  Meiothermus silvanus DSM 9946  Bacteria  normal  0.253186  normal 
 
 
-
 
NC_009620  Smed_4486  hypothetical protein  28.5 
 
 
241 aa  95.1  8e-19  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3359  hypothetical protein  28.7 
 
 
219 aa  86.7  2e-16  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1737  hypothetical protein  26.64 
 
 
225 aa  84.3  0.000000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2891  protein of unknown function DUF752  30.24 
 
 
240 aa  84  0.000000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0866147  normal  0.0591468 
 
 
-
 
NC_007604  Synpcc7942_1941  hypothetical protein  26.89 
 
 
298 aa  83.2  0.000000000000003  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1538  5-methylaminomethyl-2-thiouridine methyltransferase  26.56 
 
 
672 aa  82.8  0.000000000000004  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0998844 
 
 
-
 
NC_007347  Reut_A1378  5-methylaminomethyl-2-thiouridine methyltransferase  27.47 
 
 
668 aa  80.9  0.00000000000001  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1887  5-methylaminomethyl-2-thiouridine methyltransferase  26.52 
 
 
672 aa  80.5  0.00000000000002  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2336  hypothetical protein  29.44 
 
 
218 aa  80.5  0.00000000000002  Paracoccus denitrificans PD1222  Bacteria  normal  0.0305292  normal 
 
 
-
 
NC_009708  YpsIP31758_1410  5-methylaminomethyl-2-thiouridine methyltransferase  28.69 
 
 
689 aa  79  0.00000000000006  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000203784  n/a   
 
 
-
 
NC_010159  YpAngola_A0372  5-methylaminomethyl-2-thiouridine methyltransferase  28.69 
 
 
689 aa  79  0.00000000000006  Yersinia pestis Angola  Bacteria  hitchhiker  0.000353518  normal 
 
 
-
 
NC_010465  YPK_1519  5-methylaminomethyl-2-thiouridine methyltransferase  28.69 
 
 
689 aa  79  0.00000000000006  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0252518  n/a   
 
 
-
 
NC_012850  Rleg_3155  protein of unknown function DUF752  26.85 
 
 
238 aa  78.6  0.00000000000007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.326369 
 
 
-
 
NC_010002  Daci_4644  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  27.57 
 
 
645 aa  77.8  0.0000000000001  Delftia acidovorans SPH-1  Bacteria  normal  0.683342  hitchhiker  0.0000257745 
 
 
-
 
NC_008044  TM1040_0147  hypothetical protein  27.48 
 
 
227 aa  77.4  0.0000000000002  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00930427  normal 
 
 
-
 
NC_008820  P9303_18881  hypothetical protein  25 
 
 
313 aa  77  0.0000000000002  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.299649 
 
 
-
 
NC_012791  Vapar_2983  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  27.19 
 
 
620 aa  75.5  0.0000000000007  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_1327  hypothetical protein  26.58 
 
 
330 aa  75.1  0.0000000000008  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_06691  hypothetical protein  25.59 
 
 
298 aa  75.1  0.0000000000009  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.194908  normal 
 
 
-
 
NC_013889  TK90_1076  protein of unknown function DUF752  26.73 
 
 
619 aa  74.7  0.000000000001  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.506712  normal 
 
 
-
 
NC_011884  Cyan7425_3463  protein of unknown function DUF752  26.54 
 
 
296 aa  74.3  0.000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.0679006 
 
 
-
 
NC_007520  Tcr_0130  hypothetical protein  27.14 
 
 
674 aa  73.6  0.000000000002  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.000346728  n/a   
 
 
-
 
NC_011662  Tmz1t_1956  5-methylaminomethyl-2-thiouridine methyltransferase  26.19 
 
 
644 aa  73.9  0.000000000002  Thauera sp. MZ1T  Bacteria  normal  0.243551  n/a   
 
 
-
 
NC_003295  RSc1709  5-methylaminomethyl-2-thiouridine methyltransferase  24.77 
 
 
657 aa  73.2  0.000000000003  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0318232 
 
 
-
 
NC_008752  Aave_3048  hypothetical protein  25.11 
 
 
635 aa  72.4  0.000000000005  Acidovorax citrulli AAC00-1  Bacteria  normal  0.115559  normal  0.0258128 
 
 
-
 
NC_008816  A9601_06681  hypothetical protein  24.64 
 
 
294 aa  72.4  0.000000000005  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.245122  n/a   
 
 
-
 
NC_007335  PMN2A_0048  SAM-dependent methyltransferase  26.29 
 
 
298 aa  72.4  0.000000000006  Prochlorococcus marinus str. NATL2A  Bacteria  normal  0.62416  n/a   
 
 
-
 
NC_007577  PMT9312_0612  hypothetical protein  24.64 
 
 
301 aa  72  0.000000000007  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.930586  n/a   
 
 
-
 
NC_008782  Ajs_1796  hypothetical protein  24.9 
 
 
639 aa  71.6  0.000000000008  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0067  5-methylaminomethyl-2-thiouridine methyltransferase  26.03 
 
 
657 aa  71.6  0.000000000009  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0879  hypothetical protein  27.36 
 
 
266 aa  71.6  0.00000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1871  5-methylaminomethyl-2-thiouridine methyltransferase  25.1 
 
 
672 aa  71.6  0.00000000001  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0302238 
 
 
-
 
NC_009049  Rsph17029_2539  hypothetical protein  26.89 
 
 
266 aa  70.9  0.00000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0656342  normal 
 
 
-
 
NC_009439  Pmen_3230  5-methylaminomethyl-2-thiouridine methyltransferase  27.95 
 
 
657 aa  71.2  0.00000000001  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007516  Syncc9605_1130  hypothetical protein  25 
 
 
305 aa  70.5  0.00000000002  Synechococcus sp. CC9605  Bacteria  normal  0.398385  normal 
 
 
-
 
NC_007651  BTH_I0003  5-methylaminomethyl-2-thiouridine methyltransferase  27.6 
 
 
657 aa  70.5  0.00000000002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009091  P9301_06381  hypothetical protein  25.12 
 
 
303 aa  70.9  0.00000000002  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2586  5-methylaminomethyl-2-thiouridine methyltransferase  23.66 
 
 
675 aa  70.5  0.00000000002  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2481  5-methylaminomethyl-2-thiouridine methyltransferase  26.99 
 
 
668 aa  70.1  0.00000000002  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1458  5-methylaminomethyl-2-thiouridine methyltransferase  25.32 
 
 
675 aa  70.1  0.00000000003  Pectobacterium wasabiae WPP163  Bacteria  normal  0.622829  n/a   
 
 
-
 
NC_008781  Pnap_2424  hypothetical protein  25.32 
 
 
637 aa  70.1  0.00000000003  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0152  protein of unknown function DUF752  27.01 
 
 
230 aa  69.7  0.00000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2568  5-methylaminomethyl-2-thiouridine methyltransferase  25.99 
 
 
666 aa  69.7  0.00000000004  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.580805  normal 
 
 
-
 
NC_008312  Tery_0559  hypothetical protein  26.27 
 
 
300 aa  69.3  0.00000000004  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1926  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  24.48 
 
 
639 aa  68.9  0.00000000006  Acidovorax ebreus TPSY  Bacteria  normal  0.218262  n/a   
 
 
-
 
NC_009800  EcHS_A2475  5-methylaminomethyl-2-thiouridine methyltransferase  26.7 
 
 
668 aa  68.6  0.00000000007  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1328  5-methylaminomethyl-2-thiouridine methyltransferase  26.7 
 
 
668 aa  68.6  0.00000000007  Escherichia coli ATCC 8739  Bacteria  normal  0.831924  normal 
 
 
-
 
NC_004578  PSPTO_1639  oxidoreductase, FAD-binding protein  24.23 
 
 
660 aa  68.6  0.00000000008  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.562541  n/a   
 
 
-
 
NC_012917  PC1_2806  5-methylaminomethyl-2-thiouridine methyltransferase  24.89 
 
 
675 aa  68.6  0.00000000008  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.641074  n/a   
 
 
-
 
NC_003910  CPS_3808  hypothetical protein  25.65 
 
 
682 aa  68.2  0.0000000001  Colwellia psychrerythraea 34H  Bacteria  normal  0.424966  n/a   
 
 
-
 
NC_011205  SeD_A2732  5-methylaminomethyl-2-thiouridine methyltransferase  25.55 
 
 
666 aa  68.2  0.0000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_0840  protein of unknown function DUF752  26.92 
 
 
289 aa  67.8  0.0000000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1358  5-methylaminomethyl-2-thiouridine methyltransferase  26.32 
 
 
672 aa  67.8  0.0000000001  Dickeya zeae Ech1591  Bacteria  normal  0.0608182  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3396  5-methylaminomethyl-2-thiouridine methyltransferase  26.87 
 
 
708 aa  67.8  0.0000000001  Burkholderia mallei SAVP1  Bacteria  normal  0.145892  n/a   
 
 
-
 
NC_009074  BURPS668_0003  5-methylaminomethyl-2-thiouridine methyltransferase  26.87 
 
 
708 aa  67.8  0.0000000001  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2621  5-methylaminomethyl-2-thiouridine methyltransferase  25.55 
 
 
666 aa  67.8  0.0000000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.00000350397 
 
 
-
 
NC_007492  Pfl01_4098  5-methylaminomethyl-2-thiouridine methyltransferase  25.93 
 
 
659 aa  67.4  0.0000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_0743  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  25.2 
 
 
668 aa  67  0.0000000002  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2377  hypothetical protein  25.23 
 
 
667 aa  67.4  0.0000000002  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.954774 
 
 
-
 
NC_008709  Ping_1996  fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  25.66 
 
 
690 aa  67.4  0.0000000002  Psychromonas ingrahamii 37  Bacteria  normal  0.155036  normal  0.387333 
 
 
-
 
NC_008817  P9515_06771  hypothetical protein  23.53 
 
 
297 aa  67.4  0.0000000002  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2872  5-methylaminomethyl-2-thiouridine methyltransferase  25.55 
 
 
666 aa  67  0.0000000002  Enterobacter sp. 638  Bacteria  normal  0.715577  normal  0.0703666 
 
 
-
 
NC_011149  SeAg_B2519  5-methylaminomethyl-2-thiouridine methyltransferase  25.55 
 
 
666 aa  67.4  0.0000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0811  protein of unknown function DUF752  26.92 
 
 
289 aa  67.4  0.0000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
CP001637  EcDH1_1332  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  26.24 
 
 
668 aa  66.6  0.0000000003  Escherichia coli DH1  Bacteria  normal  0.602375  n/a   
 
 
-
 
NC_007908  Rfer_3653  hypothetical protein  25 
 
 
249 aa  66.6  0.0000000003  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_3465  5-methylaminomethyl-2-thiouridine methyltransferase  26.55 
 
 
668 aa  66.6  0.0000000003  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_2619  5-methylaminomethyl-2-thiouridine methyltransferase  26.24 
 
 
668 aa  66.6  0.0000000003  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3369  5-methylaminomethyl-2-thiouridine methyltransferase  26.11 
 
 
673 aa  66.6  0.0000000003  Serratia proteamaculans 568  Bacteria  decreased coverage  0.00235092  normal 
 
 
-
 
NC_010658  SbBS512_E2702  5-methylaminomethyl-2-thiouridine methyltransferase  26.24 
 
 
668 aa  66.2  0.0000000003  Shigella boydii CDC 3083-94  Bacteria  normal  0.673186  n/a   
 
 
-
 
NC_010622  Bphy_3066  5-methylaminomethyl-2-thiouridine methyltransferase  23.15 
 
 
655 aa  66.2  0.0000000003  Burkholderia phymatum STM815  Bacteria  normal  normal  0.16811 
 
 
-
 
NC_006348  BMA2914  5-methylaminomethyl-2-thiouridine methyltransferase  26.11 
 
 
660 aa  65.9  0.0000000004  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0217  5-methylaminomethyl-2-thiouridine methyltransferase  26.11 
 
 
660 aa  65.9  0.0000000005  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2608  5-methylaminomethyl-2-thiouridine methyltransferase  25.55 
 
 
666 aa  65.9  0.0000000005  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2850  5-methylaminomethyl-2-thiouridine methyltransferase  25.59 
 
 
644 aa  65.9  0.0000000006  Dechloromonas aromatica RCB  Bacteria  normal  0.413253  normal  0.437245 
 
 
-
 
NC_008836  BMA10229_A1628  5-methylaminomethyl-2-thiouridine methyltransferase  26.11 
 
 
711 aa  65.9  0.0000000006  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0003  5-methylaminomethyl-2-thiouridine methyltransferase  26.11 
 
 
711 aa  65.9  0.0000000006  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2973  5-methylaminomethyl-2-thiouridine methyltransferase  26.11 
 
 
711 aa  65.9  0.0000000006  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_011728  BbuZS7_0764  hypothetical protein  25.88 
 
 
225 aa  65.5  0.0000000007  Borrelia burgdorferi ZS7  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02249  hypothetical protein  25.33 
 
 
668 aa  65.1  0.0000000009  Escherichia coli BL21(DE3)  Bacteria  normal  0.425785  n/a   
 
 
-
 
NC_007948  Bpro_2343  hypothetical protein  26.02 
 
 
637 aa  65.1  0.0000000009  Polaromonas sp. JS666  Bacteria  normal  0.955559  normal 
 
 
-
 
NC_009654  Mmwyl1_3401  hypothetical protein  23.29 
 
 
674 aa  65.1  0.0000000009  Marinomonas sp. MWYL1  Bacteria  normal  0.473665  normal 
 
 
-
 
NC_012892  B21_02209  hypothetical protein  25.33 
 
 
668 aa  65.1  0.0000000009  Escherichia coli BL21  Bacteria  normal  0.334228  n/a   
 
 
-
 
NC_007005  Psyr_3742  5-methylaminomethyl-2-thiouridine methyltransferase  25.43 
 
 
665 aa  65.1  0.000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  decreased coverage  0.0063824 
 
 
-
 
NC_007614  Nmul_A1927  hypothetical protein  24.88 
 
 
617 aa  64.3  0.000000001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.224364  n/a   
 
 
-
 
NC_009428  Rsph17025_0142  hypothetical protein  26.92 
 
 
242 aa  64.7  0.000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
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