More than 300 homologs were found in PanDaTox collection
for query gene Gobs_1632 on replicon NC_013757
Organism: Geodermatophilus obscurus DSM 43160



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013757  Gobs_1632  selenocysteine-specific translation elongation factor  100 
 
 
586 aa  1091    Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.318083  n/a   
 
 
-
 
NC_013595  Sros_3739  selenocysteine-specific translation elongation factor  55.31 
 
 
591 aa  493  9.999999999999999e-139  Streptosporangium roseum DSM 43021  Bacteria  normal  0.267457  normal  0.0215815 
 
 
-
 
NC_013159  Svir_16940  selenocysteine-specific translation elongation factor SelB  55.41 
 
 
583 aa  493  9.999999999999999e-139  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.213421  normal  0.332319 
 
 
-
 
NC_009380  Strop_0585  selenocysteine-specific translation elongation factor  52.76 
 
 
604 aa  487  1e-136  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1609  selenocysteine-specific translation elongation factor  54.91 
 
 
592 aa  472  1e-132  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.00274318  normal 
 
 
-
 
NC_013131  Caci_5688  selenocysteine-specific translation elongation factor  48.65 
 
 
596 aa  436  1e-121  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_3580  selenocysteine-specific translation elongation factor  46.96 
 
 
597 aa  433  1e-120  Gordonia bronchialis DSM 43247  Bacteria  normal  0.144942  n/a   
 
 
-
 
NC_013510  Tcur_2264  selenocysteine-specific translation elongation factor  50.17 
 
 
580 aa  432  1e-119  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000107455  n/a   
 
 
-
 
NC_013172  Bfae_09660  selenocysteine-specific translation elongation factor SelB  48.83 
 
 
594 aa  424  1e-117  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5596  selenocysteine-specific translation elongation factor SelB  49.23 
 
 
570 aa  423  1e-117  Mycobacterium sp. JLS  Bacteria  normal  normal  0.436165 
 
 
-
 
NC_008705  Mkms_5304  selenocysteine-specific translation elongation factor SelB  49.06 
 
 
565 aa  420  1e-116  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_5216  selenocysteine-specific translation elongation factor SelB  49.06 
 
 
565 aa  420  1e-116  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_5282  selenocysteine-specific translation elongation factor  48.16 
 
 
603 aa  396  1e-109  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_04260  selenocysteine-specific translation elongation factor  46.26 
 
 
630 aa  352  8e-96  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.974892 
 
 
-
 
NC_013525  Tter_1385  selenocysteine-specific translation elongation factor  33.6 
 
 
619 aa  272  1e-71  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009972  Haur_1123  selenocysteine-specific translation elongation factor  33.49 
 
 
627 aa  261  3e-68  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2185  selenocysteine-specific translation elongation factor  29.81 
 
 
635 aa  253  5.000000000000001e-66  Desulfotomaculum reducens MI-1  Bacteria  normal  0.573253  n/a   
 
 
-
 
NC_008261  CPF_2372  selenocysteine-specific translation elongation factor  26.42 
 
 
635 aa  252  1e-65  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3415  selenocysteine-specific translation elongation factor SelB  35.59 
 
 
636 aa  251  2e-65  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_1114  selenocysteine-specific translation elongation factor  29.23 
 
 
633 aa  251  2e-65  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.366063 
 
 
-
 
NC_008262  CPR_2084  selenocysteine-specific translation elongation factor  26.42 
 
 
635 aa  252  2e-65  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0762  selenocysteine-specific translation elongation factor  32.57 
 
 
634 aa  249  8e-65  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.97012  normal 
 
 
-
 
NC_009943  Dole_0653  selenocysteine-specific translation elongation factor  30.96 
 
 
636 aa  247  3e-64  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0190681  n/a   
 
 
-
 
NC_009901  Spea_0443  selenocysteine-specific translation elongation factor  35.25 
 
 
635 aa  246  6e-64  Shewanella pealeana ATCC 700345  Bacteria  normal  0.363793  n/a   
 
 
-
 
NC_008463  PA14_63530  selenocysteine-specific elongation factor  36.04 
 
 
641 aa  246  6.999999999999999e-64  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.440984  normal 
 
 
-
 
NC_010814  Glov_3567  selenocysteine-specific translation elongation factor  33.65 
 
 
636 aa  241  2e-62  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3173  selenocysteine-specific translation elongation factor SelB  33.38 
 
 
644 aa  241  2e-62  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0034  selenocysteine-specific translation elongation factor  31.12 
 
 
636 aa  241  2.9999999999999997e-62  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007644  Moth_2503  selenocysteine-specific translation elongation factor SelB  33.12 
 
 
634 aa  239  8e-62  Moorella thermoacetica ATCC 39073  Bacteria  decreased coverage  0.00650537  normal  0.143065 
 
 
-
 
NC_009668  Oant_2869  selenocysteine-specific translation elongation factor  40.85 
 
 
655 aa  238  3e-61  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0571166  n/a   
 
 
-
 
NC_013204  Elen_1693  selenocysteine-specific translation elongation factor  44.99 
 
 
643 aa  237  4e-61  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.986647 
 
 
-
 
NC_011146  Gbem_0035  selenocysteine-specific translation elongation factor  30.77 
 
 
636 aa  237  4e-61  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1094  selenocysteine-specific translation elongation factor  33.54 
 
 
635 aa  236  8e-61  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5526  selenocysteine-specific elongation factor  39.57 
 
 
641 aa  235  2.0000000000000002e-60  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1647  selenocysteine-specific translation elongation factor  28.93 
 
 
644 aa  233  1e-59  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.00236334  hitchhiker  0.000000010303 
 
 
-
 
NC_011830  Dhaf_4266  selenocysteine-specific translation elongation factor  39.23 
 
 
634 aa  232  2e-59  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0141  selenocysteinyl-tRNA-specific translation factor  38.15 
 
 
621 aa  231  3e-59  Enterobacter sp. 638  Bacteria  normal  0.645753  normal  0.973594 
 
 
-
 
NC_008554  Sfum_1220  selenocysteine-specific translation elongation factor  31.07 
 
 
642 aa  230  5e-59  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.00584658  normal  0.153868 
 
 
-
 
NC_008009  Acid345_4628  selenocysteine-specific translation elongation factor SelB  33.76 
 
 
628 aa  229  1e-58  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.889697 
 
 
-
 
NC_002939  GSU0102  selenocysteine-specific translation elongation factor  32.36 
 
 
636 aa  228  2e-58  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_11400  selenocysteine-specific elongation factor SelB  41.89 
 
 
657 aa  228  2e-58  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0673  selenocysteine-specific translation elongation factor  45.1 
 
 
635 aa  228  2e-58  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_2560  selenocysteine-specific translation elongation factor  29.09 
 
 
631 aa  228  2e-58  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.475206  n/a   
 
 
-
 
NC_007498  Pcar_0832  selenocysteine-specific translation elongation factor  32.61 
 
 
637 aa  227  4e-58  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4088  selenocysteinyl-tRNA-specific translation factor  34.45 
 
 
614 aa  227  5.0000000000000005e-58  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0123  selenocysteinyl-tRNA-specific translation factor  34.45 
 
 
614 aa  226  7e-58  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03445  selenocysteinyl-tRNA-specific translation factor  34.61 
 
 
614 aa  226  1e-57  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2441  selenocysteine-specific translation elongation factor  42.38 
 
 
642 aa  226  1e-57  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03396  hypothetical protein  34.61 
 
 
614 aa  226  1e-57  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3795  selenocysteinyl-tRNA-specific translation factor  34.45 
 
 
614 aa  226  1e-57  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0091  selenocysteinyl-tRNA-specific translation factor  43.93 
 
 
615 aa  226  1e-57  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_3918  selenocysteinyl-tRNA-specific translation factor  34.13 
 
 
614 aa  225  2e-57  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.696319 
 
 
-
 
CP001637  EcDH1_0118  selenocysteine-specific translation elongation factor  34.45 
 
 
614 aa  224  3e-57  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4961  selenocysteinyl-tRNA-specific translation factor  34.13 
 
 
614 aa  223  8e-57  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.503297  normal 
 
 
-
 
NC_010322  PputGB1_0537  selenocysteine-specific translation elongation factor  37.37 
 
 
640 aa  222  9.999999999999999e-57  Pseudomonas putida GB-1  Bacteria  normal  0.82907  normal 
 
 
-
 
NC_010658  SbBS512_E4005  selenocysteinyl-tRNA-specific translation factor  33.97 
 
 
614 aa  222  1.9999999999999999e-56  Shigella boydii CDC 3083-94  Bacteria  normal  0.799296  n/a   
 
 
-
 
NC_009483  Gura_0164  selenocysteine-specific translation elongation factor  39.6 
 
 
636 aa  222  1.9999999999999999e-56  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0769  selenocysteine-specific translation elongation factor  33.28 
 
 
629 aa  221  1.9999999999999999e-56  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.709604  n/a   
 
 
-
 
NC_002947  PP_0494  selenocysteine-specific translation elongation factor  38.19 
 
 
640 aa  221  3e-56  Pseudomonas putida KT2440  Bacteria  normal  0.190998  normal 
 
 
-
 
NC_011094  SeSA_A3882  selenocysteinyl-tRNA-specific translation factor  38.05 
 
 
616 aa  219  7e-56  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3485  selenocysteine-specific translation elongation factor  33.86 
 
 
643 aa  219  7e-56  Delftia acidovorans SPH-1  Bacteria  normal  0.035122  normal 
 
 
-
 
NC_009512  Pput_0528  selenocysteine-specific translation elongation factor  37.92 
 
 
640 aa  219  7.999999999999999e-56  Pseudomonas putida F1  Bacteria  normal  normal  0.465523 
 
 
-
 
NC_011083  SeHA_C4005  selenocysteinyl-tRNA-specific translation factor  38.62 
 
 
616 aa  217  4e-55  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.187255 
 
 
-
 
NC_011205  SeD_A4067  selenocysteinyl-tRNA-specific translation factor  39.41 
 
 
616 aa  217  4e-55  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3896  selenocysteinyl-tRNA-specific translation factor  38.62 
 
 
616 aa  217  4e-55  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0549  selenocysteine-specific translation elongation factor  37.84 
 
 
640 aa  217  4e-55  Pseudomonas putida W619  Bacteria  normal  normal  0.177696 
 
 
-
 
NC_011080  SNSL254_A3960  selenocysteinyl-tRNA-specific translation factor  38.05 
 
 
616 aa  217  4e-55  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.293877  normal  0.449434 
 
 
-
 
NC_008148  Rxyl_1982  selenocysteine-specific translation elongation factor SelB  35.61 
 
 
612 aa  217  5e-55  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.869997  n/a   
 
 
-
 
NC_011769  DvMF_2506  selenocysteine-specific translation elongation factor  41.94 
 
 
650 aa  216  9.999999999999999e-55  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007492  Pfl01_2707  selenocysteine-specific translation elongation factor SelB  37.39 
 
 
636 aa  214  1.9999999999999998e-54  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.285696 
 
 
-
 
NC_011883  Ddes_2086  selenocysteine-specific translation elongation factor  45.95 
 
 
657 aa  214  2.9999999999999995e-54  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0347898  n/a   
 
 
-
 
NC_009675  Anae109_4150  selenocysteine-specific translation elongation factor  44.02 
 
 
649 aa  210  7e-53  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.00997007 
 
 
-
 
NC_008686  Pden_2825  selenocysteine-specific translation elongation factor  44.83 
 
 
643 aa  209  1e-52  Paracoccus denitrificans PD1222  Bacteria  normal  0.518854  normal 
 
 
-
 
NC_011145  AnaeK_0447  selenocysteine-specific translation elongation factor  42.96 
 
 
649 aa  206  7e-52  Anaeromyxobacter sp. K  Bacteria  normal  0.436923  n/a   
 
 
-
 
NC_013173  Dbac_2019  selenocysteine-specific translation elongation factor  38.94 
 
 
634 aa  206  7e-52  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0284313  n/a   
 
 
-
 
NC_011891  A2cp1_0448  selenocysteine-specific translation elongation factor  44.31 
 
 
649 aa  205  2e-51  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0712  selenocysteine-specific translation elongation factor  36.55 
 
 
641 aa  205  2e-51  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0419  selenocysteine-specific translation elongation factor SelB  43.73 
 
 
649 aa  205  2e-51  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0105  selenocysteine-specific translation elongation factor  31.35 
 
 
681 aa  203  6e-51  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0107  selenocysteine-specific translation elongation factor SelB  32.19 
 
 
673 aa  203  6e-51  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0110  selenocysteine-specific translation elongation factor  31.14 
 
 
681 aa  202  9.999999999999999e-51  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0106  selenocysteine-specific translation elongation factor  31.51 
 
 
673 aa  202  1.9999999999999998e-50  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_0109  selenocysteine-specific translation elongation factor  31.85 
 
 
681 aa  202  1.9999999999999998e-50  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A2391  translation elongation factor, selenocysteine-specific  36.6 
 
 
651 aa  202  1.9999999999999998e-50  Burkholderia pseudomallei 668  Bacteria  normal  0.451398  n/a   
 
 
-
 
NC_008835  BMA10229_1904  translation elongation factor, selenocysteine-specific  36.6 
 
 
651 aa  202  1.9999999999999998e-50  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0576  translation elongation factor, selenocysteine-specific  36.6 
 
 
651 aa  202  1.9999999999999998e-50  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1697  translation elongation factor, selenocysteine-specific  36.6 
 
 
651 aa  202  1.9999999999999998e-50  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1678  selenocysteine-specific translation elongation factor  36.6 
 
 
641 aa  201  3e-50  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0725  selenocysteine-specific translation elongation factor  36.6 
 
 
641 aa  201  3e-50  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2254  translation elongation factor, selenocysteine-specific  36.6 
 
 
651 aa  201  3e-50  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0142669  n/a   
 
 
-
 
NC_007952  Bxe_B2548  selenocysteine-specific translation elongation factor SelB  34.64 
 
 
637 aa  200  6e-50  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.88579 
 
 
-
 
NC_009802  CCC13826_0756  selenocysteine-specific translation elongation factor  38.52 
 
 
606 aa  200  7e-50  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1810  selenocysteine-specific translation elongation factor SelB  36.51 
 
 
627 aa  200  7.999999999999999e-50  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.251758 
 
 
-
 
NC_007511  Bcep18194_B2095  selenocysteine-specific translation elongation factor SelB  38.3 
 
 
641 aa  199  7.999999999999999e-50  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0107  selenocysteine-specific translation elongation factor SelB  31.73 
 
 
673 aa  199  7.999999999999999e-50  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0102  selenocysteine-specific translation elongation factor SelB  30.94 
 
 
673 aa  199  7.999999999999999e-50  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6555  selenocysteine-specific translation elongation factor  33.4 
 
 
637 aa  199  1.0000000000000001e-49  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0281066  hitchhiker  0.00125424 
 
 
-
 
NC_007575  Suden_0832  translation elongation factor, selenocysteine-specific  33.99 
 
 
611 aa  198  2.0000000000000003e-49  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.5118  n/a   
 
 
-
 
NC_010515  Bcenmc03_3539  selenocysteine-specific translation elongation factor  37.67 
 
 
641 aa  198  2.0000000000000003e-49  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.791284  normal 
 
 
-
 
NC_008543  Bcen2424_3989  selenocysteine-specific translation elongation factor  37.67 
 
 
641 aa  198  2.0000000000000003e-49  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
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