Gene Pden_2825 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_2825 
Symbol 
ID4581156 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp2841629 
End bp2843560 
Gene Length1932 bp 
Protein Length643 aa 
Translation table11 
GC content72% 
IMG OID639770152 
Productselenocysteine-specific translation elongation factor 
Protein accessionYP_916605 
Protein GI119385549 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG3276] Selenocysteine-specific translation elongation factor 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.518854 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGTCG GCACGGCAGG TCACATCGAC CATGGCAAGA CGGCGCTGGT CCGGGCGCTG 
ACCGGGGTCG AGACCGACCG GCTGGCCGAG GAAAAGGCCC GCGGCATCAC CATCGAGCTG
GGCTTTGCCT ATGCCGATCT GGGCGGCGGC GGCGTGACGG GCTTCGTCGA CGTGCCGGGG
CATGAGAAAT TCGTCCATAC CATGCTGGCC GGCGCCGGCG GCATCGACCT TGCCCTGCTG
GTCGTCGCCG CCGATGACGG CATCATGCCG CAGACGCGCG AGCATCTGGC CATCCTGGAC
CTTCTGGGCA TCACCCGCGG CATGGTCGCG CTGACCAAAT CCGACCTGGC GCCGCCCGAA
CGCATCGCCC GGCTTTCCGC CGGGATCGCC GAATTGCTGG CCCCCACCGG CCTTGCCGGT
GCGCCGGTCT TTCCGGTTTC GTCGCTGACC GGCGCGGGCA TCGACGCCTT GCGCGCCGCG
CTGGTGCAGG CCGAGGCCGA AACCGGCGCC CGCGCTGCCG AGGCGTGCTT TCGCCTTACC
ATCGACCGCA GCTTCACCCT GGCCGGGACG GGCACCGTCG TTACCGGCAC GGTGCTGTCG
GGCCGGGTCG CCCTGGGCGA CCAGATCGCC ATCAGCCCCT TGGGCCTGCC GGCCCGGGTG
CGCGGCATCC ACGCCCAGAG CCGCAAGGCC GAAGCCGGGC TTGCCGGCCA GCGCTGCGCC
CTGAACCTTG CCGGCGAGGG GGTGACGCGC GATGCGATCC ACCGCGGAGA CGTGGCGCTG
GACCCCGTGC TGCACGCGCC GACCCAGCGC ATCGACGTGA TCCTGCGCGC TCTGGAGGGC
GAGCCCAAGC CGCTGGCCAC CTGGTTCCCC GCCCGCCTGC ATCTGGGTGC TGCCGAAACC
GGCGCCCGCA TCGTGCCGCT GGAGGGGCCG CTGGCGCCGG GCGAGGAGGG GTTGGTGCAG
CTTGTCCTGG ACCGTCCCTT GGCCGCGACC GTGGGCGAAC GCTTCATCCT GCGCGACGTT
TCGGCCCGGC GCACAATCGG CGGCGGGCGG CTGGTCGACC TGCGCGCGCC CGCCCGCCAC
CGCACCCGAC CCGAGCGTCT GGCCGTCCTG CGCGCCATGG CCCTGCCCGA TCCTGACAAG
GCGCTGGCTG CCATGGCCGG GCTGGCGCTG GTCGACCTCG ACGCCTTCGC CCGCGACCGC
GCCTTGTCGC CGGCCGAGCT TGACCGGGCC ATTGCCTCCT CGGGCATCGC CATCGTTCCG
GGAACGCGGC AGGCGCTAAG CCCCGCCCGG CTGGGTGCGC TGCGCGAACG GATGCAAGCG
GAACTGGCCG CCTTTCACGC CGAGAACGCC GATCTTCAGG GGCTGGGCCG GGAAAAGCTG
CGGCTCTCGC TGGACCCGCG CCTGCCCAAG CCCGATTTCG CCGCCTTCCT GCGGGCCGAG
GCGGCGGCGG GGCGCATCGC GCTGGACGGT GCCTTCATCC GCCTGCCCGG CCACCTGCCC
CGCCTCTCGC CCGAGGACGA GGCTCTGCTG GAGCGCATCT TGCCGCGCCT TGTTGGCGAG
GAACGCTTTC GCCCGCCGCG CGTGCGCGAC TTTGCCCAGG AATTCGGCGC CGACGAGCCC
GAGGTCCGCC GCATCCTGCG CATGGCTGCG CGCCAGGGCC GCATCGACCA GATCGCCCAT
GACCATTTCT TCGCCCGCGC CACCACGGTC GAGATGGTCG GCATCATCCG CGACATCGCG
GCCCAGGCGC CGGAGGGCTG GTTCACCGCC CCGGATTTTC GCGACCGGGT GCGGAACGGG
CGCAAGGTGG CGATCCAGAT CCTTGACTTC TTCGACCGGC TCGGTCTGAC CTTGCGTCGG
GGCGATCTTC GTCGCATCAA CCCTCACCGG ATCGACCTGT TCACCCCGGA CGGGCCGGAC
GGTCGGGGAT AG
 
Protein sequence
MIVGTAGHID HGKTALVRAL TGVETDRLAE EKARGITIEL GFAYADLGGG GVTGFVDVPG 
HEKFVHTMLA GAGGIDLALL VVAADDGIMP QTREHLAILD LLGITRGMVA LTKSDLAPPE
RIARLSAGIA ELLAPTGLAG APVFPVSSLT GAGIDALRAA LVQAEAETGA RAAEACFRLT
IDRSFTLAGT GTVVTGTVLS GRVALGDQIA ISPLGLPARV RGIHAQSRKA EAGLAGQRCA
LNLAGEGVTR DAIHRGDVAL DPVLHAPTQR IDVILRALEG EPKPLATWFP ARLHLGAAET
GARIVPLEGP LAPGEEGLVQ LVLDRPLAAT VGERFILRDV SARRTIGGGR LVDLRAPARH
RTRPERLAVL RAMALPDPDK ALAAMAGLAL VDLDAFARDR ALSPAELDRA IASSGIAIVP
GTRQALSPAR LGALRERMQA ELAAFHAENA DLQGLGREKL RLSLDPRLPK PDFAAFLRAE
AAAGRIALDG AFIRLPGHLP RLSPEDEALL ERILPRLVGE ERFRPPRVRD FAQEFGADEP
EVRRILRMAA RQGRIDQIAH DHFFARATTV EMVGIIRDIA AQAPEGWFTA PDFRDRVRNG
RKVAIQILDF FDRLGLTLRR GDLRRINPHR IDLFTPDGPD GRG