Gene GSU0102 details

Gene Information

• Locus tag: GSU0102
• Symbol: selB
• ID: 2688038
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sulfurreducens PCA
• Kingdom: Bacteria
• Replicon accession: NC_002939
• Strand: +
• Start bp: 116665
• End bp: 118575
• Gene Length: 1911 bp
• Protein Length: 636 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637124769
• Product: selenocysteine-specific translation elongation factor
• Protein accession: NP_951164
• Protein GI: 39995213
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG3276] Selenocysteine-specific translation elongation factor
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR00475] selenocysteine-specific elongation factor SelB; [TIGR00485] translation elongation factor TU

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCATT TGATTCTCGG CACTGCCGGG CACATCGACC ACGGCAAGAC GTCACTGGTA 
CGGGCCCTTA CCGGCATCGA CACCGATCGC CTCCCCGAGG AAAAGGCGCG CGGCATTACC 
ATCGAGCTGG GATTCGCCCA CCTTGAGCTG CCGGGAGGGC TTCAGTTCGG CATCGTGGAC 
GTGCCGGGGC ATGAGCGTTT CGTCAGGACC ATGGTGGCGG GGGTCGGCGG CATGGACCTG 
GTGATGCTCG TCATTGCCGC AGACGAAGGT GTCATGCCCC AGACCCGGGA GCACCTGGAG 
ATCTGTCAGC TCTTGGGGGT CAAAAAGGGG CTTGTTGCCC TTACCAAGAG CGATATGGTC 
GATCCTGACT GGCTGGAGCT GGTAGTGGAG GAGGTCCGGG ACTATCTGGC AGGGAGCTTT 
CTTGAGGAGG CGCCCATCGT GCCGGTCTCT TCCCGGACCG GTGCCGGCAT CGAGGCCGTC 
AAGGCGGAGC TGGCGCGACT GGCAGGCCAG GTGGACGAAA AGAAGACAGA GGGTCCCTTT 
CGCCTTCCGG TTGATCGAGT CTTCACGGTT ACGGGCTTTG GCACGGTGGT CACCGGCACC 
CTGCTGTCGG GCGCCATCAG CGTGGGAGAC GAGGTAGAGC TTCTGCCGTC GGGGCTGTCC 
GCCCGGGTTC GGGGGGTCCA GACCCACGGC CGCCGGGGGG ATGCCGCCAG CGCTGGGCAG 
CGGGTGGCGG TCAACCTTCA GGGGGTGGAG CATACGGAGG TAGGACGGGG AGATATCGTG 
GTTCCGCGTG GCGTCTACCG GACCACTCGC GCCGTGGATG CCCGGCTCGA CTATCTGCCG 
TCGGCACCTC GGGAGTTGCG GCACCGCTCG ACGCTCCGGC TGCACTCCGC CACCTATGAG 
GTGCCTGCCC AAGTGATTCT GCTGGACCGT GACGTGCTCG CCCCCGGAGA TTCGACGTTC 
GTCCAGCTGC GCCTCAGGCA CCCCGTCCTC CTGCTGCCGG GAGACCCCTT CGTGCTCCGC 
TCCTACTCTC CCCAAGCAAC CCTTGGCGGG GGAAAAGTGC TCGACCCCAT GCCCCCGCGC 
CGCCGCCGCC GTTCCGACGA AGCTCTTGCG CTCCTGGAGG CGCTCGGTGA GCGTTCCGAG 
TCCGATACGG TGCGGCTTCT CGTGTCGGGC AGCCTGCTCA CCGGCATCTG CTTCGAGGAC 
ATTGTCGTGC GCGGCGGTCT CAGCGCCCGG CGCGCCGAGG CTACCATGGC AACGCTTCTG 
TCATCCGGCG AAGTGGTCCA GATGGTGCGC GAACCGCGCA TATTCCTCTC CCGCGCCTCC 
TTTGTCTCGC TCAAAGGGGG TCTGTTGTCT GAGGTCGAGG GGTATCTCCG GGACAACCCA 
CTCAGGGAAG GTCTCGGCAA GGAAGAACTC AAGACCCGCC TGCCGCGGCG CAGCGATCCA 
CGGTTCTTCA CGCCCCTTCT CACTTCCCTC GAGAAAGAGG GCAAGATCGT TGTGGATCGT 
GATCTGGTGA AGCTGCCGGG CCGCAAGGGA ACGATAACTG TGGACCAGGC GGATCTTCAG 
GTCCGCCTCG AGAAAGCGCT CCAGCGCGGC GGGTATGAGC CGCCCACCAT CAAGGAGATG 
TGCGACTCCC TGCGCTGCGC TGAAAAAATG CTGCTGGAGC ACCTCAACAT TCTGGCCCGC 
GAGGAGCGGG CGGTCAAGGT GAAGAGCGAC ATTTTCTATG CACCAGAGCC TGTGGCTGAC 
ATCCGAGAGA AACTCATGGC ATACCTCCGT GAGAAGGGAG AAATAATGCC GCCGGAGTTC 
CGGGAGCTCA CGGGGCTGTC GCGTAAGTTC ATGATCCCGC TGCTCGAATT TTTCGACCAG 
GAAAAAATAA CGATTCGTGT GGGCGACAAA CGGGTTCTCA GGCGGGGATG A 

 

Protein sequence

MKHLILGTAG HIDHGKTSLV RALTGIDTDR LPEEKARGIT IELGFAHLEL PGGLQFGIVD 
VPGHERFVRT MVAGVGGMDL VMLVIAADEG VMPQTREHLE ICQLLGVKKG LVALTKSDMV 
DPDWLELVVE EVRDYLAGSF LEEAPIVPVS SRTGAGIEAV KAELARLAGQ VDEKKTEGPF 
RLPVDRVFTV TGFGTVVTGT LLSGAISVGD EVELLPSGLS ARVRGVQTHG RRGDAASAGQ 
RVAVNLQGVE HTEVGRGDIV VPRGVYRTTR AVDARLDYLP SAPRELRHRS TLRLHSATYE 
VPAQVILLDR DVLAPGDSTF VQLRLRHPVL LLPGDPFVLR SYSPQATLGG GKVLDPMPPR 
RRRRSDEALA LLEALGERSE SDTVRLLVSG SLLTGICFED IVVRGGLSAR RAEATMATLL 
SSGEVVQMVR EPRIFLSRAS FVSLKGGLLS EVEGYLRDNP LREGLGKEEL KTRLPRRSDP 
RFFTPLLTSL EKEGKIVVDR DLVKLPGRKG TITVDQADLQ VRLEKALQRG GYEPPTIKEM 
CDSLRCAEKM LLEHLNILAR EERAVKVKSD IFYAPEPVAD IREKLMAYLR EKGEIMPPEF 
RELTGLSRKF MIPLLEFFDQ EKITIRVGDK RVLRRG