| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3173 |
|---|
| Symbol | |
|---|
| ID | 3758148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | - |
|---|
| Start bp | 3159370 |
|---|
| End bp | 3161304 |
|---|
| Gene Length | 1935 bp |
|---|
| Protein Length | 644 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637784084 |
|---|
| Product | selenocysteine-specific translation elongation factor SelB |
|---|
| Protein accession | YP_389662 |
|---|
| Protein GI | 78358213 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTAG TCATGGGTAC GGCTGGACAT ATCGATCATG GCAAGACAAC GCTGGTCAGG
GCGCTGACGG GTATAGACTG TGACAGGCTG GGAGAAGAGA AACGGCGCGG CATAACCATT
GAACTGGGGT TTGCGTTTCT TGACCTGCCG GATGACAGAC GCCTGAGTAT TGTCGACGTT
CCGGGGCACG AAAAATTTGT CAAAAACATG GTGGCCGGAG CATCGGGCAT AGATTTTGTC
ATGCTGGTCA TTGCCGCGGA TGAAGGGGTG ATGCCCCAGA CGCGGGAGCA TCTTGAAATC
TGTTCGCTGC TGGGCATACG CACCGGGCTG GTGGCACTGA CCAAAGTGGA TATGGTGGAC
GAAGAGTGGC TGGGGCTGGT GCAGGAGGAT GTGGCGGAGT TTCTGGAGGG GAGTTTTCTG
GAGGGGGCTC CGGTTTTTCC TGTTTCCGCC GCTGCCGGTA CCGGAATGGA TGCACTGCGC
GGGCATCTGG CGCAGATGGA AAAAGAACTG CGTCCCGAAC GGCGTTCCGA CCTTTTCCGG
CTGCCCGTCG ACAGGGTGTT TACCATGCGC GGCCACGGTA CGGTGGTTAC CGGTACCATG
ATTTCCGGTT CCGTGACTCT CGGAGACGAG ATAGAGCTGA TACCCGGCGG CAGGCGTACC
AAGGTGCGCG GGTTGCAGAG CCACGGTGCC ACGGTGGAGG TTGCCCCCGC GGGCAGGCGT
ACGGCAGTGA ACCTGTCGGG TCTGGACGTG GATGATATCC GCCGGGGCGA TGTGCTGGCG
CTGCCGGACA CGCTGCATCC TTCCGAGGTA TGGGACGTGC GCATGACCTG TCTTTCTTCT
GCCTCCACTC CGCTGAAGAA CAGAACAGAA GTGCACTTTC ACCATGGTTC ACGCGAACTG
CTGGCGCGTC TGTATTTTCC GGACAGAGAC CGCCTCATGC CGGGCGACAC CTGTATCTGT
CAGGTGCGTT TTCCCGAACC GGTGGCCGCC GTGTTCGGCG ACAGGTGCGT CGTCCGTTCG
TTTTCTCCGC TGCGGACAGT GGCCGGGGGC GTGGTGCTGA ATCCGGCATC TGCCATGCTG
CGCCGCCGCG ATGCACGGTT TGACGAAAAG CTGGCGCTGC TGGAAGAGCT GAATGATGCC
GACAGCGAAC GGCGCATTGC CATTCATCTG GAACTGGCCG GAGACGCCGG TTGCAGTTTC
AGCCTGCTGC GTGTGCTGAC GGACATGGAA TCGAAACGGC TTGAAAAGAC GCTGGTCAAA
CTGGGCAGTT CACAGCAGGC TTTTGTTTTT GATAAAGAAG ACCGGCGGTA TGTTTCCGGT
GGTGCGGTGG AGCGTCTTTC CTCTTCGTGT GTGGACTATC TGGAGGCGTA TCATCGCCGC
GAACCGCTGC GGCAGGGGCT GGTGCGCGGA GAACTGGCTT CCGGCTGGGG CCGGGGGCTG
CATCCCAGAC TGGTACACTT TATCACCGAA AGGCTTGTCC GCACCGGCAG GCTGGTGGCC
GAGCAGGACC TGGTGCGGCT GCCGGGGCAT ACCGTGTCGC TGGCGGCCGA TCAGCAGGGG
CTGCGCGAGA CTCTGGCGGC GGCCTATCGT CAGGGGGCCA CGGCTCCGCC CAATGTGAAG
GATGTGCTGG ACCCGCTGGG GCTGACGTAT AAAGAAGCCG CCGGTGTGTT CAAGCTGATG
CTGGACGAAG GGGTGCTGAT ACGTGTGAAG GACGGGTTGT TCTACGATGC CGGCGCCATG
GAGCAGCTGA AGGCCATGCT GGAAAAATGG TTTACGGCCA ATGAAGATAT CGGCCCCAAT
GAATTCCGCG AGCTTACGGG CCTGTCCCGC AAGTACGTCA TTCCGCTGCT GGAATATTTT
GACAGGGAAC GCGTGACCAT GCGTATAGGC GATAAGCGTG TGCTGCGCAG AAAGACCCGG
AATGATCCTG CATGA
|
|---|
| Protein sequence | MPVVMGTAGH IDHGKTTLVR ALTGIDCDRL GEEKRRGITI ELGFAFLDLP DDRRLSIVDV
PGHEKFVKNM VAGASGIDFV MLVIAADEGV MPQTREHLEI CSLLGIRTGL VALTKVDMVD
EEWLGLVQED VAEFLEGSFL EGAPVFPVSA AAGTGMDALR GHLAQMEKEL RPERRSDLFR
LPVDRVFTMR GHGTVVTGTM ISGSVTLGDE IELIPGGRRT KVRGLQSHGA TVEVAPAGRR
TAVNLSGLDV DDIRRGDVLA LPDTLHPSEV WDVRMTCLSS ASTPLKNRTE VHFHHGSREL
LARLYFPDRD RLMPGDTCIC QVRFPEPVAA VFGDRCVVRS FSPLRTVAGG VVLNPASAML
RRRDARFDEK LALLEELNDA DSERRIAIHL ELAGDAGCSF SLLRVLTDME SKRLEKTLVK
LGSSQQAFVF DKEDRRYVSG GAVERLSSSC VDYLEAYHRR EPLRQGLVRG ELASGWGRGL
HPRLVHFITE RLVRTGRLVA EQDLVRLPGH TVSLAADQQG LRETLAAAYR QGATAPPNVK
DVLDPLGLTY KEAAGVFKLM LDEGVLIRVK DGLFYDAGAM EQLKAMLEKW FTANEDIGPN
EFRELTGLSR KYVIPLLEYF DRERVTMRIG DKRVLRRKTR NDPA
|
|---|
| |